RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781128|ref|YP_003065541.1| hypothetical protein
CLIBASIA_05150 [Candidatus Liberibacter asiaticus str. psy62]
         (225 letters)



>gnl|CDD|184149 PRK13568, hofQ, putative outer membrane porin HofQ; Provisional.
          Length = 381

 Score = 29.3 bits (66), Expect = 0.88
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 64  KIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVE-GFHLEPRGGIDGDKVAGTLLF 122
           K   Q+  + Q L L  +++ L   D   V   SL  + G  L PRG +  DK   TLL 
Sbjct: 68  KTKQQAAPQEQMLPLANLTLTLQYADAEEV-ADSLQSQRGGLLSPRGSVTADKRTNTLLI 126

Query: 123 R 123
           R
Sbjct: 127 R 127


>gnl|CDD|162346 TIGR01414, autotrans_barl, outer membrane autotransporter barrel
           domain.  A number of Gram-negative bacterial proteins,
           mostly found in pathogens and associated with virulence,
           contain a conserved C-terminal domain that integrates
           into the outer membrane and enables the N-terminal
           region to be delivered across the membrane. This
           C-terminal autotransporter domain is about 400 amino
           acids in length and includes the aromatic amino
           acid-rich OMP signal, typically ending with a Phe or Trp
           residue, at the extreme C-terminus.
          Length = 429

 Score = 27.7 bits (62), Expect = 2.3
 Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 27/126 (21%)

Query: 94  YGASLGVEGFHLEPRG---------------------GIDGDKVAGTLLFRTGFTFDNNN 132
           Y  +LG  G+++EP+                      G  GD + G L  R G+ FD   
Sbjct: 290 YRYNLGGNGWYVEPQAQLSYFGVSGDDYKESNGTRVLGGGGDSLQGRLGLRVGYQFDLGT 349

Query: 133 SSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLASMLSI 192
              ++  L                       TIR   +        GVG+  K+ S LS+
Sbjct: 350 GRAVKPYLKANVLHEFKGGT----GVRVNGVTIRTDFSGTRG--EYGVGVNAKIKSNLSL 403

Query: 193 RGEYRY 198
             +  Y
Sbjct: 404 YADVDY 409


>gnl|CDD|184135 PRK13551, PRK13551, agmatine deiminase; Provisional.
          Length = 362

 Score = 26.8 bits (60), Expect = 4.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 9/47 (19%)

Query: 55  GLY--------VAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLV 93
           GLY        VA    +I+ +   R +   L G SI +DG+ GTL+
Sbjct: 120 GLYFPWDKDDQVAQKVLEIEGRDRYRAKPFVLEGGSIHVDGE-GTLL 165


>gnl|CDD|162191 TIGR01073, pcrA, ATP-dependent DNA helicase PcrA.  Designed to
           identify pcrA members of the uvrD/rep subfamily.
          Length = 726

 Score = 27.0 bits (60), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 141 IYGFGGARIRNIMSVE 156
           IYG+ GA I+NI+S E
Sbjct: 249 IYGWRGADIQNILSFE 264


>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
           transporter, HlyB family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 694

 Score = 25.9 bits (57), Expect = 8.1
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 1   MRDIRKIRNYFRNTAKIILSGLFLGFFSSAAMADYGYSPQFQPTIMVS 48
           +R++ +IRN+   +A  ++  L       A M  + YSP     ++ S
Sbjct: 242 VRELEQIRNFLTGSALTVVLDLLFVVVFLAVM--FFYSPTLTGVVIGS 287


>gnl|CDD|184481 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
           Provisional.
          Length = 268

 Score = 26.0 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 56  LYVAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYG 95
           +++ A  + I+ Q   RLQ+L +N  ++GL G DG L+ G
Sbjct: 73  VFIMA-MALINKQLVERLQSLGVN--AVGLSGLDGGLLEG 109


>gnl|CDD|132620 TIGR03581, EF_0839, conserved hypothetical protein
           EF_0839/AHA_3917.  Members of this family of relatively
           uncommon proteins are found in both Gram-positive (e.g.
           Enterococcus faecalis) and Gram-negative (e.g. Aeromonas
           hydrophila) bacteria, as part of a cluster of conserved
           proteins. The function is unknown.
          Length = 236

 Score = 25.9 bits (57), Expect = 8.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 101 EGFHLEPRGGIDGDKVA 117
            GF+LEP GGID D   
Sbjct: 176 HGFYLEPTGGIDLDNFE 192


>gnl|CDD|115707 pfam07071, DUF1341, Protein of unknown function (DUF1341).  This
           family consists of several hypothetical bacterial
           proteins of around 220 residues in length. The function
           of this family is unknown.
          Length = 218

 Score = 25.8 bits (57), Expect = 8.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 101 EGFHLEPRGGIDGD 114
            GF+LEP GGID D
Sbjct: 176 HGFYLEPTGGIDLD 189


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,689,989
Number of extensions: 230105
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 20
Length of query: 225
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,049,753
Effective search space: 546716655
Effective search space used: 546716655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)