RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781128|ref|YP_003065541.1| hypothetical protein
CLIBASIA_05150 [Candidatus Liberibacter asiaticus str. psy62]
         (225 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 45/276 (16%), Positives = 66/276 (23%), Gaps = 143/276 (51%)

Query: 7   IRNYF-------RNTAKIILSGLFLGFFSSAA------MADYG----------------- 36
           I+NY        R   K   S LF     +        +A +G                 
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALF----RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178

Query: 37  -YSPQFQPTIMVS------------NFAKF--KGLYVAADFSKIDHQ--------SPVRL 73
            Y       I  S            +  K   +GL +        +          P+  
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-- 236

Query: 74  QNLSLNGV-----------SIGLD-GQ-----DGTLVYGASLGV------------EGFH 104
            +  L GV            +G   G+      G    G S G+            E F 
Sbjct: 237 -SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT--GHSQGLVTAVAIAETDSWESFF 293

Query: 105 LEPRGGIDGDKVAGTLLFRTGF----TFDNNN--SSILQNTLIYGFGGARIRNIMSVESA 158
                     + A T+LF  G      + N +   SIL++               S+E  
Sbjct: 294 -------VSVRKAITVLFFIGVRCYEAYPNTSLPPSILED---------------SLE-- 329

Query: 159 DTAKSTIRNIVANGFLDKVIGVGIEKKLASMLSIRG 194
                       N           E   + MLSI  
Sbjct: 330 ------------NN----------EGVPSPMLSISN 343



 Score = 32.2 bits (73), Expect = 0.11
 Identities = 39/215 (18%), Positives = 61/215 (28%), Gaps = 62/215 (28%)

Query: 26  FFSSAAMADYGYSPQFQPTIMVSNFAKFKGLYVAADFSKIDHQSPVR--LQNLSLNGVSI 83
           F         G++   +PT       KF G YV+    +          L  L L     
Sbjct: 37  FNKILPEPTEGFAADDEPTTPAELVGKFLG-YVS-SLVEPSKVGQFDQVLN-LCLTEFEN 93

Query: 84  G-LDGQD-GTLVYGASLGVEGFHLEPRGGIDGDKVAGTLLFRTGFT--------FDNNNS 133
             L+G D   L   A L       E    +   K     L +   T        FD  ++
Sbjct: 94  CYLEGNDIHALA--AKL-----LQENDTTLVKTK----ELIKNYITARIMAKRPFDKKSN 142

Query: 134 SIL------QNTLIYG-FGG--------ARIRNIMSVESADTAKSTIRNIVANGFLDKVI 178
           S L       N  +   FGG          +R++       T    + +++         
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-----QTYHVLVGDLIK-------- 189

Query: 179 GVGIEKKLASMLS--IRGEYRYVACYDQPWDVSKW 211
                   A  LS  IR        + Q  ++ +W
Sbjct: 190 ------FSAETLSELIRTTLDAEKVFTQGLNILEW 218


>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids,
           micelles; NMR {Escherichia coli} SCOP: f.4.1.1 PDB:
           1q9f_A 1q9g_A 1qj8_A* 1qj9_A
          Length = 148

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 24/158 (15%), Positives = 40/158 (25%), Gaps = 20/158 (12%)

Query: 68  QSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTLLFRTGFT 127
           QS  + Q   + G ++    ++     G                             G  
Sbjct: 11  QSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPA 70

Query: 128 FDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLA 187
           +  N+        IYG  G       + E       T     +        G G++    
Sbjct: 71  YRIND-----WASIYGVVGVGYGKFQTTEYPTYKNDTSDYGFS-------YGAGLQFNPM 118

Query: 188 SMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
             +++   Y          DV      G + AGV  RF
Sbjct: 119 ENVALDFSYEQSRIRS--VDV------GTWIAGVGYRF 148


>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles;
           NMR {Klebsiella pneumoniae}
          Length = 216

 Score = 33.3 bits (75), Expect = 0.040
 Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 8/146 (5%)

Query: 80  GVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTLLFRTGFTFDNNNSSILQNT 139
           G   G                 G         +G   A  +       +   +       
Sbjct: 55  GAFGGYQVNPYLGFEM-GYDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITD----DLD 109

Query: 140 LIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLASMLSIRGEYRYV 199
           +    GG   R       A T  S   +      +      G+E  +   ++ R EY++V
Sbjct: 110 IYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPV---FAGGVEWAVTRDIATRLEYQWV 166

Query: 200 ACYDQPWDVSKWREKGDFTAGVVLRF 225
                   V    + G  + GV  RF
Sbjct: 167 NNIGDAGTVGTRPDNGMLSLGVSYRF 192


>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A
           {Neisseria meningitidis} SCOP: f.4.1.1
          Length = 155

 Score = 29.6 bits (66), Expect = 0.63
 Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 20/171 (11%)

Query: 55  GLYVAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGD 114
           G YV AD +     S +         +S G    D          V+    +       D
Sbjct: 5   GFYVQADAAHAKASSSLGSAKGFSPRISAGYRIND------LRFAVDYTRYKNYKAPSTD 58

Query: 115 KVAGTLLFRTGFTFDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFL 174
               ++     + FD  +   ++  L       R    +    + +  S    +      
Sbjct: 59  FKLYSIGASAIYDFDTQSP--VKPYLGARLSLNRASVDLGGSDSFSQTSIGLGV------ 110

Query: 175 DKVIGVGIEKKLASMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
                 G+   +   + +   YRY   Y    +  K    G+ +AGV ++F
Sbjct: 111 ----LTGVSYAVTPNVDLDAGYRYN--YIGKVNTVKNVRSGELSAGVRVKF 155


>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP:
           f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
          Length = 171

 Score = 28.6 bits (63), Expect = 1.1
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 178 IGVGIEKKLASMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
              G+E  +   ++ R EY++         +    + G  + GV  RF
Sbjct: 123 FAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 170


>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
           homodimer, rossman fold, 4 domains, HISD, L-histidine
           biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
           {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
           1kar_A
          Length = 434

 Score = 26.4 bits (58), Expect = 4.8
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 7   IRNYFRNTAKIILSG-LFLGFFSSAAMADYGYSPQ-FQPTIMVSNFAKFK-GLYVAADFS 63
            RN       I  +G +FLG +S  +  DY        PT     +      L + ADF 
Sbjct: 332 TRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPT---YGYTATCSSLGL-ADFQ 387

Query: 64  K 64
           K
Sbjct: 388 K 388


>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG,
           lyase, PSI-2, protein structure initiative; HET: MSE;
           1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
          Length = 275

 Score = 26.5 bits (58), Expect = 5.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 84  GLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVA 117
           GL  ++       +   EGF LEP GGID +   
Sbjct: 192 GLAHEEEYRAVAKACAEEGFALEPTGGIDKENFE 225


>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane,
           cell outer membrane, hydrolase, membrane, transmembrane;
           HET: C8E; 2.50A {Pseudomonas aeruginosa}
          Length = 632

 Score = 26.0 bits (56), Expect = 7.7
 Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 37/214 (17%)

Query: 21  GLFLGFFSSAAMADYGYSPQFQPTIMVSNFAKFK--GLYVAADFSKIDHQSPVRLQNLSL 78
           G+  GF+     A    S     + M S F +++    +  A  +          +  +L
Sbjct: 401 GVAAGFYRQKLEAGAKDSDYRMNSYMASAFVQYQENRWWADAALTGGYLDYDDLKRKFAL 460

Query: 79  NGVSIGLDGQDGTLVYGASLGV---------EGFHLEPRGGI------------------ 111
            G      G     ++  S  +           +HL P                      
Sbjct: 461 GGGERSEKGDTNGHLWAFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASAT 520

Query: 112 -------DGDKVAGTLLFRTGFTFDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKST 164
                             +  + F ++     +      +        MS+ S    + T
Sbjct: 521 ALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEYAHEREYEDDTQDLTMSLNSLPGNRFT 580

Query: 165 IRNIVANGFLDKVIGVGIEKKLASMLSIRGEYRY 198
           +        L++V  +G  +KLA  LS+RG Y +
Sbjct: 581 LEGYTPQDHLNRV-SLGFSQKLAPELSLRGGYNW 613


>3lm7_A Putative 4-hydroxy-2-oxoglutarate aldolase / 2-
           dehydro-3-deoxyphosphogluconate aldolase...; structural
           genomics, PSI-2; 1.90A {Yersinia enterocolitica}
          Length = 249

 Score = 25.5 bits (56), Expect = 9.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)

Query: 101 EGFHLEPRGGIDGD 114
            GF LEP GGID D
Sbjct: 186 TGFWLEPTGGIDLD 199


>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein
           structure initiative, midwest center for structural
           genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae
           subsp} PDB: 3nzr_A 3lm7_A
          Length = 249

 Score = 25.7 bits (56), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 101 EGFHLEPRGGIDGDKVA 117
             F LEP GGID +  +
Sbjct: 186 HDFWLEPTGGIDLENYS 202


>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A
           {Homo sapiens} SCOP: b.122.1.12
          Length = 239

 Score = 25.7 bits (56), Expect = 9.6
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 77  SLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTL-LFRTGFTFDNNNSSI 135
            + G+ +G         +   +   G H     GI G    G   L   G   D+ +   
Sbjct: 16  PIPGIPVG-----TMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHG- 69

Query: 136 LQNTLIY-GFGG 146
             N   Y G GG
Sbjct: 70  --NFFTYTGSGG 79


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,916,480
Number of extensions: 83119
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 19
Length of query: 225
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 136
Effective length of database: 3,535,514
Effective search space: 480829904
Effective search space used: 480829904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)