RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781128|ref|YP_003065541.1| hypothetical protein
CLIBASIA_05150 [Candidatus Liberibacter asiaticus str. psy62]
         (225 letters)



>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia
           coli [TaxId: 562]}
          Length = 148

 Score = 33.4 bits (76), Expect = 0.014
 Identities = 20/158 (12%), Positives = 43/158 (27%), Gaps = 20/158 (12%)

Query: 68  QSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTLLFRTGFT 127
           QS  + Q   + G ++    ++     G                             G  
Sbjct: 11  QSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPA 70

Query: 128 FDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLA 187
           +  N+ + +   +  G+G  +     + ++  +                  G G++    
Sbjct: 71  YRINDWASIYGVVGVGYGKFQTTEYPTYKNDTSDYGF------------SYGAGLQFNPM 118

Query: 188 SMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
             +++   Y          DV      G + AGV  RF
Sbjct: 119 ENVALDFSYEQSRIRS--VDV------GTWIAGVGYRF 148


>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane
           domain {Escherichia coli [TaxId: 562]}
          Length = 171

 Score = 28.6 bits (63), Expect = 0.44
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 178 IGVGIEKKLASMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
              G+E  +   ++ R EY++         +    + G  + GV  RF
Sbjct: 123 FAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 170


>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 277

 Score = 26.7 bits (59), Expect = 1.9
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 43  PTIMVSNFAKFKGLYVAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTL-VYGASL 98
           P ++   FA +   Y           +   L  L    V  GL      + +YGA +
Sbjct: 139 PLLINPVFADYLEAYGKGGVKAKALGALPMLARLYWYTVEFGLINTPAGMRIYGAGI 195


>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria
           meningitidis [TaxId: 487]}
          Length = 155

 Score = 26.6 bits (58), Expect = 1.9
 Identities = 26/171 (15%), Positives = 48/171 (28%), Gaps = 20/171 (11%)

Query: 55  GLYVAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGD 114
           G YV AD +     S +         +S G    D          V+    +       D
Sbjct: 5   GFYVQADAAHAKASSSLGSAKGFSPRISAGYRIND------LRFAVDYTRYKNYKAPSTD 58

Query: 115 KVAGTLLFRTGFTFDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFL 174
               ++     + FD  +         Y      +           + S     +     
Sbjct: 59  FKLYSIGASAIYDFDTQS-----PVKPYLGARLSLNRASVDLGGSDSFSQTSIGLG---- 109

Query: 175 DKVIGVGIEKKLASMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
              +  G+   +   + +   YRY   Y    +  K    G+ +AGV ++F
Sbjct: 110 ---VLTGVSYAVTPNVDLDAGYRYN--YIGKVNTVKNVRSGELSAGVRVKF 155


>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
           coli [TaxId: 562]}
          Length = 431

 Score = 26.2 bits (57), Expect = 2.6
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 7   IRNYFRNTAKIILSG-LFLGFFSSAAMADYGYSPQ-FQPTIMVSNFAKFK-GLYVAADFS 63
            RN       I  +G +FLG +S  +  DY        PT     +      L + ADF 
Sbjct: 329 TRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPT---YGYTATCSSLGL-ADFQ 384

Query: 64  KIDHQSPVRLQNLSLNGV 81
           K      + +Q LS  G 
Sbjct: 385 K-----RMTVQELSKEGF 397


>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
           (RecB), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 485

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 9/22 (40%), Positives = 9/22 (40%)

Query: 141 IYGFGGARIRNIMSVESADTAK 162
           IY F GA I   M   S   A 
Sbjct: 419 IYAFRGADIFTYMKARSEVHAH 440


>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 184

 Score = 24.7 bits (53), Expect = 6.2
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 5/29 (17%)

Query: 183 EKKLASML-----SIRGEYRYVACYDQPW 206
             +L + L     + +G+  Y A YD P 
Sbjct: 142 ATQLRTTLEGTPATYQGDVYYCAGYDPPM 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 830,111
Number of extensions: 36079
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 12
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)