BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781128|ref|YP_003065541.1| hypothetical protein
CLIBASIA_05150 [Candidatus Liberibacter asiaticus str. psy62]
(225 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781128|ref|YP_003065541.1| hypothetical protein CLIBASIA_05150 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 225
Score = 458 bits (1179), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MRDIRKIRNYFRNTAKIILSGLFLGFFSSAAMADYGYSPQFQPTIMVSNFAKFKGLYVAA 60
MRDIRKIRNYFRNTAKIILSGLFLGFFSSAAMADYGYSPQFQPTIMVSNFAKFKGLYVAA
Sbjct: 1 MRDIRKIRNYFRNTAKIILSGLFLGFFSSAAMADYGYSPQFQPTIMVSNFAKFKGLYVAA 60
Query: 61 DFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTL 120
DFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTL
Sbjct: 61 DFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTL 120
Query: 121 LFRTGFTFDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGV 180
LFRTGFTFDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGV
Sbjct: 121 LFRTGFTFDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGV 180
Query: 181 GIEKKLASMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
GIEKKLASMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF
Sbjct: 181 GIEKKLASMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
>gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 242
Score = 26.2 bits (56), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 116 VAGTLLFRTGFTFDNNNSSILQNTLIYG---FGGARI--RNIMSVESADTAKSTIRNIVA 170
+ G ++ + G++ D+ LIYG FGGA + ++ VES D +K+
Sbjct: 128 IYGDVVLKAGYSVDS--------LLIYGMGGFGGAYVIDSSLEKVES-DNSKNAKGRFDG 178
Query: 171 NGFLDKVIGVGIEKKLASMLSIRGEYRYVACY 202
+G V+G+G++ + +S+ YRY+ +
Sbjct: 179 HG-SSVVLGIGLDYMVNYDISLSASYRYIPHH 209
>gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 325
Score = 24.6 bits (52), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 58 VAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVA 117
V AD HQ PV + +L I L+ +D +++G + G L P D +
Sbjct: 123 VMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAG--AVVLAPSPLKDKSGIL 180
Query: 118 GTLLFRTGFTFD 129
G L G +D
Sbjct: 181 GIELTSDGSKYD 192
>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 22.7 bits (47), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 132 NSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIE 183
N++ Q T Y +GG NI+ S D + N G+ D V+ V E
Sbjct: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-DIVLTVHDE 631
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 22.3 bits (46), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 143 GFGGARIRNIMSVESADTAKSTIRNIVANGFLD--KVIGVGIEKKLASMLSIRGEYRYVA 200
GF GA +RN+++ + A+ R + F D I +G E++ +M E + +
Sbjct: 351 GFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTE---EEKKIT 407
Query: 201 CYDQ 204
Y +
Sbjct: 408 AYHE 411
>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
Liberibacter asiaticus str. psy62]
Length = 833
Score = 22.3 bits (46), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 128 FDNNNSSILQNTLIYGFGGARIR 150
FD+N ++++ +++ FGG +R
Sbjct: 464 FDSNITALIATVVLFFFGGGAVR 486
>gi|254780998|ref|YP_003065411.1| hypothetical protein CLIBASIA_04495 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 146
Score = 22.3 bits (46), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 201 CYDQPWDVSKWREKGD 216
C + W V +W KGD
Sbjct: 48 CMSKLWMVIEWENKGD 63
>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 623
Score = 22.3 bits (46), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 154 SVESADTAKSTIRNIVANGFL-DKVIGVGIEKKLASMLSIRGEYRYVA 200
S+ S D++ + N FL DKV G+E++L + L G+ ++V+
Sbjct: 23 SIPSLDSSIKDYSRQLTNIFLKDKVFFDGLEQELLASLGSMGQEKFVS 70
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,174
Number of Sequences: 1233
Number of extensions: 5899
Number of successful extensions: 15
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 225
length of database: 328,796
effective HSP length: 71
effective length of query: 154
effective length of database: 241,253
effective search space: 37152962
effective search space used: 37152962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)