Query gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:43:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781129.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2a_A Telomerase reverse tran 7.5 95 0.004 13.5 0.6 15 54-68 10-24 (199)
2 3exc_X Uncharacterized protein 4.4 1.6E+02 0.0068 12.4 0.3 21 7-27 19-39 (91)
3 1fui_A L-fucose isomerase; ket 4.3 2.2E+02 0.0092 11.7 1.7 27 75-101 451-482 (591)
4 1vk9_A Conserved hypothetical 3.9 93 0.0039 13.6 -1.3 17 83-99 23-39 (151)
5 1x9p_A Penton protein; jellyro 3.5 2.3E+02 0.0096 11.6 0.4 20 12-31 39-58 (523)
6 2w6j_H F1-ATPase delta subunit 3.4 2E+02 0.0086 11.8 0.1 72 3-82 9-86 (168)
7 2ivy_A Hypothetical protein SS 3.3 2.3E+02 0.0098 11.6 0.3 20 9-28 20-39 (101)
8 3hiq_A Vacuolar saporin; ribos 3.1 2.2E+02 0.0091 11.7 0.0 9 18-26 45-53 (345)
9 1ybe_A Naprtase, nicotinate ph 2.9 2.8E+02 0.012 11.2 0.4 33 30-62 405-442 (449)
10 2au5_A Conserved domain protei 2.8 2.8E+02 0.012 11.2 0.2 10 23-32 40-49 (139)
No 1
>2b2a_A Telomerase reverse transcriptase; TERT, RT, transferase; 2.22A {Tetrahymena thermophila}
Probab=7.53 E-value=95 Score=13.53 Aligned_cols=15 Identities=53% Similarity=0.503 Sum_probs=5.7
Q ss_pred HHHHHHHEEEEEECC
Q ss_conf 552221101001057
Q gi|254781129|r 54 QKINNIILSKAMVFP 68 (103)
Q Consensus 54 qkinniilskamvfp 68 (103)
||||||--.|.|.-.
T Consensus 10 qkinninnnkqmltr 24 (199)
T 2b2a_A 10 QKINNINNNKQMLTR 24 (199)
T ss_dssp -----------CCBC
T ss_pred HHHCCCCCHHHHHHH
T ss_conf 885064543777644
No 2
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, catalytic aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus}
Probab=4.39 E-value=1.6e+02 Score=12.36 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=14.7
Q ss_pred HHHHHHCCCCEEEEEEEECCC
Q ss_conf 664310011002366751258
Q gi|254781129|r 7 HKAASNALNFATTQVQYSTFT 27 (103)
Q Consensus 7 hkaasnalnfattqvqystft 27 (103)
.|.+.--..|+...||||.|.
T Consensus 19 ~kv~k~L~~yGl~rvQ~SVFe 39 (91)
T 3exc_X 19 NKLANNLKKLGLERIQRSAFE 39 (91)
T ss_dssp HHHHHHHHHTTCEEEETTEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEE
T ss_conf 999999997099516865899
No 3
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L-fuculose conversion; HET: FOC; 2.50A {Escherichia coli K12} SCOP: b.43.2.1 c.85.1.1
Probab=4.26 E-value=2.2e+02 Score=11.70 Aligned_cols=27 Identities=33% Similarity=0.376 Sum_probs=20.6
Q ss_pred HHHCCC-----EEEEEECCCEEEEEECCCHHC
Q ss_conf 552050-----344540463236632332000
Q gi|254781129|r 75 SLKEGV-----ALNLVKDESLSCVIAEGEKLE 101 (103)
Q Consensus 75 slkegv-----alnlvkdeslscviaegekle 101 (103)
..|.|. .+|++++..+.+.|+||+-++
T Consensus 451 ~tk~G~pvT~~Ri~~v~G~~~~l~IaeG~~V~ 482 (591)
T 1fui_A 451 LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVE 482 (591)
T ss_dssp BCCTTCEEEEEEEEEETTTEEEEEEEEEEECC
T ss_pred EECCCCEEEEEEEEEECCCCEEEEEEEEEEEC
T ss_conf 61799869999999967982699997776852
No 4
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=3.92 E-value=93 Score=13.58 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=8.9
Q ss_pred EEEECCCEEEEEECCCH
Q ss_conf 45404632366323320
Q gi|254781129|r 83 NLVKDESLSCVIAEGEK 99 (103)
Q Consensus 83 nlvkdeslscviaegek 99 (103)
.|.+.+.+|||+..|+.
T Consensus 23 ~LL~e~~~S~vv~~g~~ 39 (151)
T 1vk9_A 23 KIFEKKDLSLLAYSGRS 39 (151)
T ss_dssp HHHHHTTCSEEEESSSE
T ss_pred HHHHHCCEEEEEECCCE
T ss_conf 99971883799965999
No 5
>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A
Probab=3.51 E-value=2.3e+02 Score=11.60 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.3
Q ss_pred HCCCCEEEEEEEECCCHHHH
Q ss_conf 00110023667512583450
Q gi|254781129|r 12 NALNFATTQVQYSTFTPEKM 31 (103)
Q Consensus 12 nalnfattqvqystftpekm 31 (103)
+.-||.|+-||-+.|+|..-
T Consensus 39 dHSnf~TtViQN~d~tp~eA 58 (523)
T 1x9p_A 39 DHSNFLTTVIQNNDYSPGEA 58 (523)
T ss_dssp BTTEEEEECCCCTTSCHHHH
T ss_pred CCCCCEEEEEECCCCCCCCC
T ss_conf 52202024565488880102
No 6
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Probab=3.41 E-value=2e+02 Score=11.84 Aligned_cols=72 Identities=13% Similarity=0.291 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCCCEEEEEEEECC-CHHHHCCCHHHCCCCCHHHHHHCCCCHHHHHHHHEE----EEEECCCHHH-HHHH
Q ss_conf 135566431001100236675125-834501014434788811211025776552221101----0010578123-5655
Q gi|254781129|r 3 RDGLHKAASNALNFATTQVQYSTF-TPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNIILS----KAMVFPNQSD-IASL 76 (103)
Q Consensus 3 rdglhkaasnalnfattqvqystf-tpekmklsqdylgntnpdavnqlnlddqkinniils----kamvfpnqsd-iasl 76 (103)
|-|+.+-.-.+-.||+...-++.+ +|+||+|.- .-|+. .-++...+..+++. .--+.|+..+ |+.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~l~i-----vtP~~---~v~~~~~V~~V~lp~~eG~~GILp~H~plit~L 80 (168)
T 2w6j_H 9 RPGLGRLVRQVRLYAEAAAAQAPAAGPGQMSFTF-----ASPTQ---VFFNSANVRQVDVPTQTGAFGILAAHVPTLQVL 80 (168)
T ss_dssp ------------------------------CCCE-----ECSSC---EEEC-----CCBCCC-----------------C
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-----ECCCC---EEECCCCEEEEEEECCCCCEEECCCCHHHHHEE
T ss_conf 7135556576304665203257889987479999-----87982---288788479999966945714458876466010
Q ss_pred HCCCEE
Q ss_conf 205034
Q gi|254781129|r 77 KEGVAL 82 (103)
Q Consensus 77 kegval 82 (103)
+.|+.-
T Consensus 81 ~pG~i~ 86 (168)
T 2w6j_H 81 RPGLVV 86 (168)
T ss_dssp CSBCCB
T ss_pred CCCEEE
T ss_conf 488189
No 7
>2ivy_A Hypothetical protein SSO1404; structural genomics,unknown function, structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=3.26 E-value=2.3e+02 Score=11.56 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=13.2
Q ss_pred HHHHCCCCEEEEEEEECCCH
Q ss_conf 43100110023667512583
Q gi|254781129|r 9 AASNALNFATTQVQYSTFTP 28 (103)
Q Consensus 9 aasnalnfattqvqystftp 28 (103)
.+.--..|.-+.||||.|.-
T Consensus 20 v~k~L~~yGl~rvQ~SVFe~ 39 (101)
T 2ivy_A 20 VAEFLKKKGLDRIQYSVFMG 39 (101)
T ss_dssp HHHHHHHTTCEEEETTEEEE
T ss_pred HHHHHHHHCCCCEEEEEEEE
T ss_conf 99999971985305138999
No 8
>3hiq_A Vacuolar saporin; ribosome inactivating proteins, RIPS, hydrolase, plant defense, protein synthesis inhibitor, toxin; 2.19A {Saponaria officinalis}
Probab=3.14 E-value=2.2e+02 Score=11.72 Aligned_cols=9 Identities=78% Similarity=1.065 Sum_probs=0.0
Q ss_pred EEEEEEECC
Q ss_conf 236675125
Q gi|254781129|r 18 TTQVQYSTF 26 (103)
Q Consensus 18 ttqvqystf 26 (103)
||..|||||
T Consensus 45 ~~~~~~~~~ 53 (345)
T 3hiq_A 45 TTKAQYSTF 53 (345)
T ss_dssp ---------
T ss_pred CCHHHHHHH
T ss_conf 408889999
No 9
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=2.92 E-value=2.8e+02 Score=11.16 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHCCCHHHCCCCCHHHH-----HHCCCCHHHHHHHHEE
Q ss_conf 50101443478881121-----1025776552221101
Q gi|254781129|r 30 KMKLSQDYLGNTNPDAV-----NQLNLDDQKINNIILS 62 (103)
Q Consensus 30 kmklsqdylgntnpdav-----nqlnlddqkinniils 62 (103)
+||+|++---+|-|+.. ..+...+|....++++
T Consensus 405 ~~KlSd~~gK~tg~~~~~~~~~r~~g~~~~~~~~~~~~ 442 (449)
T 1ybe_A 405 AVKLSDNPQKATGDPAEVERYLKFFGEEDHKEQKVLVE 442 (449)
T ss_dssp CCBCCSSGGGCBSCHHHHHHHHHHHCCCC---------
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 46724898876699899999999837676423137985
No 10
>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} SCOP: a.244.1.1
Probab=2.78 E-value=2.8e+02 Score=11.18 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=0.0
Q ss_pred EECCCHHHHC
Q ss_conf 5125834501
Q gi|254781129|r 23 YSTFTPEKMK 32 (103)
Q Consensus 23 ystftpekmk 32 (103)
||+|.|+-.+
T Consensus 40 ~S~F~P~VL~ 49 (139)
T 2au5_A 40 ISHFSPIVLA 49 (139)
T ss_dssp CTTCCHHHHH
T ss_pred CCCCCHHHHH
T ss_conf 1337999999
Done!