Query         gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:32:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781129.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1fuia1 b.43.2.1 (A:356-591) L  14.7      39  0.0028   14.3   1.9   22   80-101   106-127 (236)
  2 d1vk9a_ c.97.1.3 (A:) Hypothet   4.6      44  0.0032   14.0  -1.3   17   83-99     22-38  (147)
  3 d1of5b_ d.17.4.2 (B:) mRNA tra   3.4 1.5E+02   0.011   11.3   0.9   17   74-90    128-144 (165)
  4 d1zpwx1 d.58.58.1 (X:2-83) Hyp   3.2 1.6E+02   0.012   11.2   0.9   21    7-28     18-38  (82)
  5 d2ajta2 c.85.1.2 (A:1-328) L-a   3.1 1.7E+02   0.012   11.1   2.3   28    7-34     64-91  (328)
  6 d2au5a1 a.244.1.1 (A:1-132) Hy   3.0 1.5E+02   0.011   11.4   0.2   27    7-33     19-47  (132)
  7 d2ivya1 d.58.58.1 (A:2-89) Hyp   2.4 1.9E+02   0.014   10.8   0.3   19    9-27     19-37  (88)
  8 d1gnya_ b.18.1.11 (A:) Xylan-b   2.2 2.2E+02   0.016   10.5   0.8   16   85-100   103-118 (153)
  9 d1w7ca2 d.17.2.1 (A:43-169) Ly   1.9 2.4E+02   0.017   10.3   2.2   50   23-79     19-72  (127)
 10 d1mr1c_ d.217.1.2 (C:) SMAD4-b   1.9 2.3E+02   0.017   10.4   0.0   19   31-49     70-88  (97)

No 1  
>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.66  E-value=39  Score=14.29  Aligned_cols=22  Identities=32%  Similarity=0.355  Sum_probs=18.9

Q ss_pred             CEEEEEECCCEEEEEECCCHHC
Q ss_conf             0344540463236632332000
Q gi|254781129|r   80 VALNLVKDESLSCVIAEGEKLE  101 (103)
Q Consensus        80 valnlvkdeslscviaegekle  101 (103)
                      .-||+||.....+-|+||+-.+
T Consensus       106 ~RlNlv~G~gpvlqIaEG~tV~  127 (236)
T d1fuia1         106 TRVNIIKGLGPVLQIAEGWSVE  127 (236)
T ss_dssp             EEEEEETTTEEEEEEEEEEECC
T ss_pred             EEEEECCCCCCEEEEEEEEEEC
T ss_conf             4110013777358996424756


No 2  
>d1vk9a_ c.97.1.3 (A:) Hypothetical protein TM1506 {Thermotoga maritima [TaxId: 2336]}
Probab=4.61  E-value=44  Score=14.02  Aligned_cols=17  Identities=18%  Similarity=0.352  Sum_probs=9.6

Q ss_pred             EEEECCCEEEEEECCCH
Q ss_conf             45404632366323320
Q gi|254781129|r   83 NLVKDESLSCVIAEGEK   99 (103)
Q Consensus        83 nlvkdeslscviaegek   99 (103)
                      .|.+.+.+|||+..|+.
T Consensus        22 ~LLe~~~~s~vv~~g~~   38 (147)
T d1vk9a_          22 KIFEKKDLSLLAYSGRS   38 (147)
T ss_dssp             HHHHHTTCSEEEESSSE
T ss_pred             HHHHCCCEEEEEECCCE
T ss_conf             99970883799967979


No 3  
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.38  E-value=1.5e+02  Score=11.29  Aligned_cols=17  Identities=24%  Similarity=0.374  Sum_probs=12.2

Q ss_pred             HHHHCCCEEEEEECCCE
Q ss_conf             65520503445404632
Q gi|254781129|r   74 ASLKEGVALNLVKDESL   90 (103)
Q Consensus        74 aslkegvalnlvkdesl   90 (103)
                      -+---||.|+||-||..
T Consensus       128 wg~~fg~~l~lvvde~i  144 (165)
T d1of5b_         128 WGPYFGISLQLIIDDRI  144 (165)
T ss_dssp             CCCCEEEEEEEEEEGGG
T ss_pred             CCCCCCEEEEEEEEEHH
T ss_conf             31343504899974112


No 4  
>d1zpwx1 d.58.58.1 (X:2-83) Hypothetical protein TTP0101 (TT1823) {Thermus thermophilus [TaxId: 274]}
Probab=3.17  E-value=1.6e+02  Score=11.17  Aligned_cols=21  Identities=29%  Similarity=0.271  Sum_probs=13.6

Q ss_pred             HHHHHHCCCCEEEEEEEECCCH
Q ss_conf             6643100110023667512583
Q gi|254781129|r    7 HKAASNALNFATTQVQYSTFTP   28 (103)
Q Consensus         7 hkaasnalnfattqvqystftp   28 (103)
                      .|.+---..|. ..+|||.|--
T Consensus        18 ~kv~k~l~~yg-~rvQ~SVFe~   38 (82)
T d1zpwx1          18 VKLANLLKSYG-ERVQLSVFEC   38 (82)
T ss_dssp             HHHHHHHHTTE-EEEETTEEEE
T ss_pred             HHHHHHHHHHC-CCCEEEEEEE
T ss_conf             99999999737-1134789999


No 5  
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia coli [TaxId: 562]}
Probab=3.06  E-value=1.7e+02  Score=11.11  Aligned_cols=28  Identities=29%  Similarity=0.267  Sum_probs=18.7

Q ss_pred             HHHHHHCCCCEEEEEEEECCCHHHHCCC
Q ss_conf             6643100110023667512583450101
Q gi|254781129|r    7 HKAASNALNFATTQVQYSTFTPEKMKLS   34 (103)
Q Consensus         7 hkaasnalnfattqvqystftpekmkls   34 (103)
                      -+.|++.-+.+---+.-.||.|.||-..
T Consensus        64 ~~ean~~~~~~gvi~wmhTfspakmwi~   91 (328)
T d2ajta2          64 CRDANYDDPCAGLVVWLHTFSPAKMWIN   91 (328)
T ss_dssp             HHHHHHCTTEEEEEEEECSCCCHHHHHH
T ss_pred             HHHHHCCCCCCEEEEEECCCCCHHHHHH
T ss_conf             9986358884389997045672577677


No 6  
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=3.02  E-value=1.5e+02  Score=11.39  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=17.4

Q ss_pred             HHHHHHCCCCEEEE--EEEECCCHHHHCC
Q ss_conf             66431001100236--6751258345010
Q gi|254781129|r    7 HKAASNALNFATTQ--VQYSTFTPEKMKL   33 (103)
Q Consensus         7 hkaasnalnfattq--vqystftpekmkl   33 (103)
                      ..--+|.|.|....  -.||+|.|+-.|.
T Consensus        19 ~~FL~N~LAFs~G~~T~D~S~F~P~VL~~   47 (132)
T d2au5a1          19 RSFLSNMLAFTRGHFTGDISHFSPIVLAE   47 (132)
T ss_dssp             HHHHHHHHHHHHHHHHCCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             99999879987521046513379999998


No 7  
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.42  E-value=1.9e+02  Score=10.76  Aligned_cols=19  Identities=26%  Similarity=0.295  Sum_probs=12.4

Q ss_pred             HHHHCCCCEEEEEEEECCC
Q ss_conf             4310011002366751258
Q gi|254781129|r    9 AASNALNFATTQVQYSTFT   27 (103)
Q Consensus         9 aasnalnfattqvqystft   27 (103)
                      .+---..|.-..||||.|-
T Consensus        19 v~k~l~~yGl~rvQ~SVFe   37 (88)
T d2ivya1          19 VAEFLKKKGLDRIQYSVFM   37 (88)
T ss_dssp             HHHHHHHTTCEEEETTEEE
T ss_pred             HHHHHHHHCCCCEEEEEEE
T ss_conf             9999997198033743899


No 8  
>d1gnya_ b.18.1.11 (A:) Xylan-binding module from xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}
Probab=2.16  E-value=2.2e+02  Score=10.49  Aligned_cols=16  Identities=31%  Similarity=0.545  Sum_probs=12.0

Q ss_pred             EECCCEEEEEECCCHH
Q ss_conf             4046323663233200
Q gi|254781129|r   85 VKDESLSCVIAEGEKL  100 (103)
Q Consensus        85 vkdeslscviaegekl  100 (103)
                      -.|-.++|.|.||.+-
T Consensus       103 ~~d~t~scti~e~d~k  118 (153)
T d1gnya_         103 DTDLTLTCTIDEDDDK  118 (153)
T ss_dssp             SSCEEEEEECCCTTCT
T ss_pred             CCCCEEEEEECCCCHH
T ss_conf             8870899997158612


No 9  
>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}
Probab=1.92  E-value=2.4e+02  Score=10.28  Aligned_cols=50  Identities=14%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             EECCCHHHHCCCHHHCCCCCHHHHHHCCCCHHHHHHH----HEEEEEECCCHHHHHHHHCC
Q ss_conf             5125834501014434788811211025776552221----10100105781235655205
Q gi|254781129|r   23 YSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNI----ILSKAMVFPNQSDIASLKEG   79 (103)
Q Consensus        23 ystftpekmklsqdylgntnpdavnqlnlddqkinni----ilskamvfpnqsdiaslkeg   79 (103)
                      +.-.|++.++--++||       -.+|||.+-.-..+    |..--|..||.+|.-..-+|
T Consensus        19 ~adLt~~E~~aV~~~L-------~~~lnLt~~~~a~~~dN~I~~Iell~P~K~dvL~yLD~   72 (127)
T d1w7ca2          19 WTSLAKEEVQEVLDLL-------HSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDE   72 (127)
T ss_dssp             TCCCCHHHHHHHHHHH-------HHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHH-------HHCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHCC
T ss_conf             5438999999999999-------72589853444775566699999326998999987608


No 10 
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.90  E-value=2.3e+02  Score=10.39  Aligned_cols=19  Identities=32%  Similarity=0.524  Sum_probs=0.0

Q ss_pred             HCCCHHHCCCCCHHHHHHC
Q ss_conf             0101443478881121102
Q gi|254781129|r   31 MKLSQDYLGNTNPDAVNQL   49 (103)
Q Consensus        31 mklsqdylgntnpdavnql   49 (103)
                      |+|++||.|...++-+-++
T Consensus        70 L~L~~d~~~~~~~~~l~~~   88 (97)
T d1mr1c_          70 ILLSQDYTGKEEQARLGRC   88 (97)
T ss_dssp             CEECTTCCCTTHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHH
T ss_conf             1514556784079999999


Done!