BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781129|ref|YP_003065542.1| hypothetical protein
CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040806|gb|ACT57602.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score =  210 bits (535), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60
           MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII
Sbjct: 1   MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60

Query: 61  LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103
           LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE
Sbjct: 61  LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103


>gi|315122524|ref|YP_004063013.1| hypothetical protein CKC_03880 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495926|gb|ADR52525.1| hypothetical protein CKC_03880 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 138

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 4/80 (5%)

Query: 1   MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60
           M R+ LH AASNAL FA  + + S+ T E ++ +QDYL +TNPDA+N LN+DDQK+ NI+
Sbjct: 52  MFRNSLHLAASNALKFAMAKFKSSSLTSEVLESAQDYLRSTNPDALNYLNIDDQKMTNIL 111

Query: 61  LSKAMVFPNQSDIA--SLKE 78
           +SK+  F +Q  ++  SLKE
Sbjct: 112 ISKS--FSSQDKLSDPSLKE 129


>gi|13517634|gb|AAK28912.1|AF338706_3 probable GTP binding protein [Corynebacterium jeikeium]
          Length = 181

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 15  NFATTQVQ-YSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNIILSKAMVFPNQSDI 73
            FAT  +Q Y T  P+++   + + G+T P A   ++ D +K    I ++ + F +  ++
Sbjct: 90  GFATLGLQTYLTAGPKEVARGRIHQGDTAPQAAGVIHTDFEK--GFIKAEIVAFEDLDEL 147

Query: 74  ASLKEGVALNLVKDESLSCVIAEGEKLE 101
            S+ E  A   V+ E    V+A+G+ +E
Sbjct: 148 GSMAEARAHGKVRQEGKDYVMADGDVVE 175


>gi|187933829|ref|YP_001885974.1| ferrous iron transport protein B [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721982|gb|ACD23203.1| ferrous iron transport protein B [Clostridium botulinum B str.
           Eklund 17B]
          Length = 716

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 2   LRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNIIL 61
           L+D ++  + N++N  T  ++Y++F  E + L +  L    PD     NL D KIN   L
Sbjct: 178 LKDEIYNLSFNSINKNTISIKYNSFIEESILLIEKSL----PD-----NLKD-KINTRWL 227

Query: 62  SKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEK 102
           S  ++  + + ++S+   +  NL+ D  +S  I   ++  K
Sbjct: 228 SLKLLEGDLTLLSSIDNYIGFNLLDDTGISKAIYNAKEYLK 268


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040806|gb|ACT57602.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60
           MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII
Sbjct: 1   MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60

Query: 61  LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103
           LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE
Sbjct: 61  LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103


>gi|315122524|ref|YP_004063013.1| hypothetical protein CKC_03880 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495926|gb|ADR52525.1| hypothetical protein CKC_03880 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 138

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 4/80 (5%)

Query: 1   MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60
           M R+ LH AASNAL FA  + + S+ T E ++ +QDYL +TNPDA+N LN+DDQK+ NI+
Sbjct: 52  MFRNSLHLAASNALKFAMAKFKSSSLTSEVLESAQDYLRSTNPDALNYLNIDDQKMTNIL 111

Query: 61  LSKAMVFPNQSDIA--SLKE 78
           +SK+  F +Q  ++  SLKE
Sbjct: 112 ISKS--FSSQDKLSDPSLKE 129


>gi|88803474|ref|ZP_01119000.1| putative outermembrane protein [Polaribacter irgensii 23-P]
 gi|88781040|gb|EAR12219.1| putative outermembrane protein [Polaribacter irgensii 23-P]
          Length = 264

 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 25/35 (71%)

Query: 25  TFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNI 59
           T+T +++KL+ D+L   + D +N LN++ ++ +NI
Sbjct: 122 TYTRKEVKLAADFLRFEHTDGLNYLNVEVKRFDNI 156


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.131    0.336 

Lambda     K      H
   0.267   0.0397    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,552,691,748
Number of Sequences: 14124377
Number of extensions: 47093444
Number of successful extensions: 115513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 115503
Number of HSP's gapped (non-prelim): 22
length of query: 103
length of database: 4,842,793,630
effective HSP length: 72
effective length of query: 31
effective length of database: 3,825,838,486
effective search space: 118600993066
effective search space used: 118600993066
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)