RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781129|ref|YP_003065542.1| hypothetical protein
CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>gnl|CDD|34517 COG4908, COG4908, Uncharacterized protein containing a NRPS
          condensation (elongation) domain [General function
          prediction only].
          Length = 439

 Score = 29.5 bits (66), Expect = 0.21
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 51 LDDQKINNIILSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEK 99
           DD KIN+  L   + F ++ +I  LK+ +  ++     LSC  +EGEK
Sbjct: 17 ADDYKINDHTLHYVITFGDKFNIDRLKKALRYSVKAVPILSCKFSEGEK 65


>gnl|CDD|36206 KOG0988, KOG0988, KOG0988, RNA-directed RNA polymerase QDE-1
           required for posttranscriptional gene silencing and RNA
           interference [RNA processing and modification].
          Length = 1145

 Score = 24.6 bits (53), Expect = 6.4
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 5   GLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNT 41
            L K  S A++F  +    S    EK +   D++  T
Sbjct: 903 ELAKKHSQAVDFPKSGADESMPEKEKPERYPDFMEKT 939


>gnl|CDD|147633 pfam05559, DUF763, Protein of unknown function (DUF763).  This
           family consists of several uncharacterized bacterial and
           archaeal proteins of unknown function.
          Length = 319

 Score = 24.1 bits (53), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 73  IASLKEGVALNLVKDES 89
           I+  ++G  LNLV  ES
Sbjct: 185 ISGRRQGEVLNLVDKES 201


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.310    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,055,339
Number of extensions: 43868
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 8
Length of query: 103
Length of database: 6,263,737
Length adjustment: 70
Effective length of query: 33
Effective length of database: 4,751,107
Effective search space: 156786531
Effective search space used: 156786531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)