HHsearch alignment for GI: 254781130 and conserved domain: cd04769
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=91.97 E-value=0.75 Score=26.67 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=44.0
Q ss_pred EEEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0232557888766334410676603136777599999999999999999999999999999999999
Q gi|254781130|r 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 301 ~~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
T Consensus 53 r~~GfsL~eI~~ll~~~~~~~----~~~~~~~~~~l~~~~~~i~~qI~~L~~~~~~L~~~~~~l~~~ 115 (116)
T cd04769 53 RQLGFTLAELKAIFAGHEGRA----VLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKDA 115 (116)
T ss_pred HHCCCCHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997999999999996435789----985999999999999999999999999999999999999874