Query gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 378
No_of_seqs 114 out of 123
Neff 7.6
Searched_HMMs 33803
Date Wed Jun 1 22:15:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781130.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3gud_A NECK appendage protein 99.7 6.9E-18 2E-22 156.9 2.8 96 260-355 1-128 (129)
2 >3gw6_A Endo-N-acetylneuramini 99.4 1.2E-14 3.4E-19 132.2 0.5 82 254-335 8-90 (127)
3 >1uii_A Geminin; human, DNA re 88.7 1.5 4.4E-05 23.9 6.1 38 335-372 43-80 (83)
4 >1zxa_A CGMP-dependent protein 87.9 1 3.1E-05 25.1 4.9 41 332-372 12-52 (67)
5 >1nkp_A C-MYC, MYC proto-oncog 87.4 2.2 6.5E-05 22.6 7.8 61 308-372 26-86 (88)
6 >2qm4_A Non-homologous END-joi 85.6 2.7 7.9E-05 22.0 6.3 43 328-370 5-47 (107)
7 >1wlq_A Geminin; coiled-coil; 84.7 2.7 7.9E-05 22.0 5.6 37 336-372 36-72 (83)
8 >1xi4_A Clathrin heavy chain; 83.2 1.9 5.7E-05 23.0 4.4 34 330-363 31-64 (68)
9 >3l4f_A RHO guanine nucleotide 82.6 3.5 0.0001 21.0 6.8 42 333-374 9-50 (61)
10 >2w6b_A RHO guanine nucleotide 81.9 3.7 0.00011 20.9 6.8 42 333-374 12-53 (56)
11 >1gu4_A CAAT/enhancer binding 80.4 3 9E-05 21.5 4.6 40 332-371 37-76 (78)
12 >1a02_F FOS, AP-1 fragment FOS 80.4 3.6 0.00011 20.9 5.0 30 340-369 25-54 (56)
13 >1nkp_B MAX protein, MYC proto 79.7 4.3 0.00013 20.4 7.2 47 326-372 35-81 (83)
14 >1kd8_B GABH BLL, GCN4 acid ba 78.8 4.6 0.00014 20.2 5.1 30 340-369 3-32 (36)
15 >1nlw_A MAD protein, MAX dimer 78.4 4.7 0.00014 20.1 7.8 59 309-371 22-80 (80)
16 >1t6f_A Geminin; coiled-coil, 77.5 4 0.00012 20.6 4.5 29 338-366 4-35 (37)
17 >1kd8_A GABH AIV, GCN4 acid ba 75.0 4.9 0.00015 19.9 4.4 30 340-369 3-32 (36)
18 >1hjb_A Ccaat/enhancer binding 74.6 5.9 0.00017 19.3 6.2 40 333-372 38-77 (87)
19 >2yy0_A C-MYC-binding protein; 74.3 5.9 0.00018 19.3 4.9 29 341-369 22-50 (53)
20 >1wle_A Seryl-tRNA synthetase; 74.1 6 0.00018 19.2 5.8 30 334-363 81-110 (121)
21 >2oqq_A Transcription factor H 73.0 6.4 0.00019 19.1 6.2 34 335-368 7-40 (42)
22 >1jnm_A Proto-oncogene C-JUN; 72.9 6.4 0.00019 19.1 5.1 33 339-371 23-55 (62)
23 >1t2k_D Cyclic-AMP-dependent t 72.9 6.4 0.00019 19.0 6.2 34 335-368 26-59 (61)
24 >1c1g_A Tropomyosin; 7.00A {Su 70.7 7.1 0.00021 18.7 5.9 39 335-373 34-72 (77)
25 >3i1g_A General control protei 70.0 4.2 0.00012 20.5 3.0 29 341-369 3-31 (33)
26 >2dgc_A Protein (GCN4); basic 69.8 6.7 0.0002 18.9 4.1 28 340-367 32-59 (63)
27 >1dip_A Delta-sleep-inducing p 69.5 2.9 8.5E-05 21.7 2.1 35 338-372 14-48 (77)
28 >2w83_C C-JUN-amino-terminal k 69.3 7.6 0.00022 18.5 5.2 38 335-372 34-71 (77)
29 >2gr7_A Adhesin; trimeric auto 68.6 7.6 0.00022 18.5 4.1 33 338-370 25-57 (129)
30 >2dq0_A Seryl-tRNA synthetase; 68.4 7.9 0.00023 18.3 5.0 34 340-373 71-104 (113)
31 >2w6a_A ARF GTPase-activating 66.0 8.7 0.00026 18.0 5.9 30 335-364 31-60 (63)
32 >1ihq_A Chimeric peptide glytm 65.9 8.7 0.00026 18.0 5.0 29 340-368 7-35 (38)
33 >1gd2_E Transcription factor P 65.3 9 0.00027 17.9 5.2 36 335-370 33-68 (70)
34 >1ses_A Seryl-tRNA synthetase; 65.2 9 0.00027 17.9 5.8 33 340-372 42-74 (83)
35 >1am9_A Srebp-1A, protein (ste 64.6 9.2 0.00027 17.8 6.2 53 309-367 27-79 (82)
36 >2j1d_G DAAM1, disheveled-asso 64.4 9.3 0.00028 17.8 4.0 17 331-347 190-206 (294)
37 >1dh3_A Transcription factor C 63.7 8.1 0.00024 18.3 3.5 30 343-372 20-49 (55)
38 >1hlo_A Protein (transcription 62.4 10 0.0003 17.5 5.9 48 308-360 32-79 (80)
39 >3a7o_A Autophagy protein 16; 62.0 10 0.0003 17.5 4.7 34 334-367 21-54 (75)
40 >1ez3_A Syntaxin-1A; three hel 61.8 10 0.0003 17.5 5.2 24 332-355 6-29 (127)
41 >1ci6_A Transcription factor A 61.5 10 0.00031 17.4 6.3 34 336-369 28-61 (63)
42 >1czq_A IQN17, fusion protein 61.3 10 0.00031 17.4 5.0 30 340-369 3-32 (46)
43 >1lwu_A Fibrinogen alpha-1 cha 60.6 11 0.00032 17.3 3.9 33 339-371 23-55 (119)
44 >3efg_A Protein SLYX homolog; 60.4 11 0.00032 17.3 5.2 38 333-370 23-60 (78)
45 >1fos_E P55-C-FOS proto-oncoge 60.0 11 0.00032 17.2 5.7 31 340-370 24-54 (62)
46 >1ezj_A Nucleocapsid phosphopr 58.9 11 0.00034 17.1 7.1 53 324-376 41-97 (115)
47 >1htn_A Tetranectin; plasminog 58.0 7 0.00021 18.7 2.3 28 337-365 21-48 (99)
48 >2wam_A RV2714, conserved hypo 57.6 12 0.00035 17.0 4.2 31 341-371 272-302 (351)
49 >1yke_B RNA polymerase II holo 56.9 12 0.00036 16.9 6.1 37 337-373 91-127 (151)
50 >1ykh_B RNA polymerase II holo 56.8 12 0.00036 16.9 6.1 37 337-373 91-127 (132)
51 >1hci_A Alpha-actinin 2; tripl 54.4 13 0.00039 16.6 6.4 40 338-377 17-56 (104)
52 >1t3j_A Mitofusin 1; coiled co 53.7 14 0.00041 16.5 7.0 46 325-370 34-79 (96)
53 >1s35_A Beta-I spectrin, spect 53.4 14 0.00041 16.5 6.4 41 337-377 19-59 (94)
54 >2oc5_A Hypothetical protein; 52.7 14 0.00042 16.4 4.9 49 323-371 29-77 (244)
55 >1kp8_A Groel protein; chapero 52.6 14 0.00042 16.4 3.7 32 341-372 151-184 (185)
56 >1mz9_A Cartilage oligomeric m 52.0 15 0.00043 16.3 5.7 37 332-368 3-39 (45)
57 >3iv1_A Tumor susceptibility g 51.8 15 0.00043 16.3 7.2 46 330-375 10-55 (78)
58 >2hy6_A General control protei 51.6 15 0.00043 16.3 4.2 29 340-368 3-31 (34)
59 >1hci_A Alpha-actinin 2; tripl 51.6 15 0.00044 16.3 5.2 32 336-367 26-57 (98)
60 >1naf_A ADP-ribosylation facto 51.4 15 0.00044 16.3 6.9 38 332-369 40-77 (158)
61 >1jcd_A Major outer membrane l 51.0 15 0.00044 16.2 5.9 38 334-371 7-44 (52)
62 >1kid_A Groel (HSP60 class); c 50.8 15 0.00045 16.2 4.4 33 341-373 167-201 (203)
63 >2zhg_A Redox-sensitive transc 49.9 16 0.00046 16.1 4.9 61 301-373 13-74 (103)
64 >3ghg_C Fibrinogen gamma chain 49.8 16 0.00046 16.1 3.9 45 328-372 22-66 (70)
65 >2akf_A Coronin-1A; coiled coi 49.4 16 0.00047 16.0 4.8 25 337-361 5-29 (32)
66 >1ylm_A Hypothetical protein B 49.3 16 0.00047 16.0 4.0 56 302-357 77-136 (144)
67 >2z5i_A TM, general control pr 48.9 16 0.00047 16.0 6.2 40 335-374 9-48 (52)
68 >1zke_A Hypothetical protein H 48.2 16 0.00049 15.9 3.1 24 340-363 54-77 (83)
69 >3c3f_A Alpha/beta peptide wit 47.6 17 0.0005 15.8 5.0 29 340-368 3-31 (34)
70 >1wt6_A Myotonin-protein kinas 47.5 17 0.0005 15.8 4.8 34 337-370 44-77 (81)
71 >1fzc_A Fibrin; blood coagulat 47.3 9.4 0.00028 17.8 1.6 29 341-369 3-31 (87)
72 >1sjp_A Chaperonin60, 60 kDa c 47.0 17 0.00051 15.8 4.4 31 341-371 149-181 (182)
73 >1svf_A Protein (fusion glycop 46.8 17 0.00051 15.7 6.7 45 331-375 14-58 (64)
74 >2wq1_A General control protei 45.6 18 0.00053 15.6 5.0 29 340-368 2-30 (33)
75 >2p22_C Protein SRN2; endosome 44.3 19 0.00055 15.5 4.7 28 340-367 39-66 (67)
76 >1we3_A CPN60(groel); chaperon 44.0 19 0.00056 15.4 3.4 60 304-372 22-89 (131)
77 >1twf_C B44.5, DNA-directed RN 43.8 19 0.00056 15.4 4.0 96 260-359 14-139 (190)
78 >2fyz_A Fusion protein, fusion 43.7 19 0.00056 15.4 6.3 46 330-375 16-61 (63)
79 >2o1e_A YCDH; alpha-beta prote 43.6 19 0.00056 15.4 2.9 60 304-367 146-205 (218)
80 >2gzd_C RAB11 family-interacti 43.4 10 0.00031 17.4 1.3 40 319-358 38-80 (107)
81 >1wlx_A Alpha-actinin 4; three 43.2 19 0.00057 15.4 5.9 38 337-374 44-81 (129)
82 >2k48_A Nucleoprotein; viral p 42.7 20 0.00058 15.3 4.2 22 335-356 32-53 (107)
83 >1q08_A Zn(II)-responsive regu 42.7 20 0.00058 15.3 5.1 61 302-373 14-74 (99)
84 >2dq3_A Seryl-tRNA synthetase; 42.6 20 0.00058 15.3 3.3 29 336-364 73-101 (112)
85 >2ocy_A RAB guanine nucleotide 42.0 20 0.00059 15.2 4.1 32 337-368 65-96 (112)
86 >3h0g_C DNA-directed RNA polym 41.3 12 0.00036 16.9 1.4 99 259-365 12-142 (165)
87 >3err_A Fusion protein of micr 40.3 21 0.00063 15.0 4.5 24 348-371 58-81 (91)
88 >1u5p_A Spectrin alpha chain, 39.4 22 0.00065 14.9 6.3 40 338-377 9-48 (83)
89 >2p22_A Suppressor protein STP 38.5 23 0.00067 14.8 5.5 31 338-368 17-47 (135)
90 >2gd7_A Hexim1 protein, HMBA-i 38.3 23 0.00067 14.8 3.1 24 344-367 67-90 (107)
91 >1j1e_C Troponin I, TNI; THIN 38.0 23 0.00068 14.8 5.9 37 336-372 9-52 (126)
92 >2j91_A Adenylosuccinate lyase 37.4 14 0.00042 16.4 1.2 20 341-360 18-37 (62)
93 >2bni_A General control protei 37.4 23 0.00069 14.7 3.7 29 340-368 3-31 (34)
94 >1fxk_A Prefoldin; archaeal pr 37.3 24 0.0007 14.7 8.4 47 325-371 59-105 (107)
95 >3csx_A Putative uncharacteriz 37.2 24 0.0007 14.7 2.9 31 337-367 14-44 (81)
96 >2wvr_C DNA replication factor 36.9 8.4 0.00025 18.2 0.0 10 310-319 502-511 (546)
97 >1r48_A Proline/betaine transp 36.3 24 0.00072 14.6 4.3 23 344-366 7-29 (33)
98 >1w1w_A Structural maintenance 35.4 9.1 0.00027 17.9 0.0 16 303-318 52-67 (133)
99 >1ztm_A Fusion glycoprotein; f 35.0 25 0.00075 14.4 6.7 50 325-374 77-126 (171)
100 >1iok_A Chaperonin 60; chapero 35.0 14 0.00041 16.4 0.9 32 341-372 148-181 (182)
101 >2djv_A Methionyl-tRNA synthet 34.9 25 0.00075 14.4 4.0 20 333-352 15-34 (79)
102 >1x59_A Histidyl-tRNA syntheta 34.9 26 0.00075 14.4 4.0 36 333-368 11-52 (73)
103 >1u4q_A Spectrin alpha chain, 34.5 26 0.00076 14.4 5.5 15 341-355 92-106 (135)
104 >2wm9_A Dedicator of cytokines 34.1 22 0.00064 15.0 1.8 12 332-343 65-76 (122)
105 >1oxz_A ADP-ribosylation facto 34.0 26 0.00078 14.3 5.8 29 326-354 102-130 (186)
106 >1j1d_C Troponin I, TNI; THIN 33.3 27 0.0008 14.2 7.1 37 336-372 63-106 (133)
107 >1z0j_B FYVE-finger-containing 32.8 22 0.00065 14.9 1.6 23 345-367 35-57 (59)
108 >1ugo_A BCL2-associated athano 32.5 28 0.00082 14.2 5.7 74 300-373 17-94 (99)
109 >3gaa_A Uncharacterized protei 31.4 29 0.00085 14.0 3.6 32 341-372 217-248 (252)
110 >3emo_C HIA (adhesin); transme 30.7 30 0.00087 13.9 6.0 39 324-363 52-90 (162)
111 >1jth_B Syntaxin 1A; coiled-co 30.3 30 0.00089 13.9 5.6 32 336-367 15-46 (77)
112 >2pnv_A Small conductance calc 30.2 30 0.00089 13.9 5.2 27 338-364 9-35 (43)
113 >1g5g_A Fusion protein; NDV, p 30.0 30 0.00089 13.9 2.6 38 336-373 123-160 (324)
114 >1gk6_A Vimentin; intermediate 29.9 30 0.0009 13.9 4.0 27 340-366 9-35 (59)
115 >2ke4_A CDC42-interacting prot 29.9 30 0.0009 13.8 5.0 21 341-361 65-85 (98)
116 >1lq7_A Alpha3W; three helix b 29.8 30 0.0009 13.8 4.5 16 341-356 28-43 (67)
117 >2oa5_A Hypothetical protein B 29.7 31 0.0009 13.8 2.7 26 339-364 64-89 (110)
118 >2zqm_A Prefoldin beta subunit 29.7 31 0.0009 13.8 7.3 51 323-373 62-112 (117)
119 >2js5_A Uncharacterized protei 29.5 31 0.00091 13.8 4.7 28 340-367 5-32 (71)
120 >1sjj_A Actinin; 3-helix bundl 27.7 33 0.00097 13.6 2.9 29 336-364 80-108 (154)
121 >2r2v_A GCN4 leucine zipper; c 27.7 33 0.00097 13.6 5.0 29 340-368 3-31 (34)
122 >1r9d_A Glycerol dehydratase; 27.5 33 0.00098 13.6 3.0 49 308-356 120-169 (216)
123 >1ytz_T Troponin T; muscle, TH 27.5 33 0.00098 13.6 7.5 36 336-371 47-89 (107)
124 >3edu_A Beta-I spectrin, spect 27.2 34 0.00099 13.5 2.6 36 336-371 138-173 (218)
125 >2a3q_A Hypothetical protein; 26.8 34 0.001 13.5 5.7 74 304-377 28-112 (170)
126 >1gmj_A ATPase inhibitor; coil 26.7 34 0.001 13.5 6.3 33 341-373 47-79 (84)
127 >3eqm_A Cytochrome P450 19A1; 25.7 24 0.00071 14.6 0.8 15 336-350 57-71 (121)
128 >2pa8_D DNA-directed RNA polym 25.5 36 0.0011 13.3 3.8 81 260-356 9-89 (92)
129 >3kbt_A Beta-I spectrin, spect 25.3 36 0.0011 13.3 3.1 29 340-368 114-142 (189)
130 >1a0a_A BHLH, protein (phospha 25.0 25 0.00075 14.5 0.8 40 308-347 22-61 (63)
131 >3gpv_A Transcriptional regula 24.6 37 0.0011 13.2 5.3 63 303-370 16-78 (92)
132 >1de4_C Transferrin receptor, 24.2 33 0.00097 13.6 1.2 46 323-368 88-141 (152)
133 >3ilw_A DNA gyrase subunit A; 24.2 38 0.0011 13.1 4.4 17 260-276 18-34 (168)
134 >2cpt_A SKD1 protein, vacuolar 24.1 38 0.0011 13.1 5.5 45 328-372 40-87 (117)
135 >1m7k_A Silencer of death doma 24.0 38 0.0011 13.1 3.7 64 303-366 26-93 (99)
136 >1j1d_B Troponin T, TNT; THIN 23.9 38 0.0011 13.1 5.2 36 336-371 47-89 (106)
137 >3dyt_A Sorting nexin-9; 3-hel 23.6 39 0.0011 13.0 3.1 18 358-375 86-103 (124)
138 >2kes_A Synphilin-1; synphilli 23.1 39 0.0012 13.0 6.0 37 340-376 6-42 (48)
139 >1gax_A Valrs, valyl-tRNA synt 23.0 40 0.0012 13.0 4.4 29 326-354 92-120 (159)
140 >3ghg_A Fibrinogen alpha chain 22.7 40 0.0012 12.9 7.0 67 304-370 7-89 (107)
141 >3f6n_A Virion-associated prot 22.4 41 0.0012 12.9 4.8 45 306-350 7-60 (129)
142 >1sjj_A Actinin; 3-helix bundl 22.3 41 0.0012 12.9 3.8 31 341-371 156-186 (198)
143 >1gk4_A Vimentin; intermediate 22.1 41 0.0012 12.8 5.9 20 342-361 30-49 (84)
144 >2h8o_A Geranyltranstransferas 22.1 41 0.0012 12.8 2.6 49 325-373 280-332 (335)
145 >2d7c_C RAB11 family-interacti 22.0 41 0.0012 12.8 4.3 26 335-360 5-30 (42)
146 >1fmh_B General control protei 22.0 41 0.0012 12.8 4.5 28 339-366 2-29 (33)
147 >3bbo_Z Ribosomal protein L29; 21.9 41 0.0012 12.8 2.7 10 333-342 147-156 (173)
148 >2qkd_A Zinc finger protein ZP 21.5 42 0.0012 12.8 4.5 60 314-373 30-90 (127)
149 >1hqm_D DNA-directed RNA polym 21.4 42 0.0013 12.7 2.7 23 337-360 39-61 (89)
150 >3frt_A Charged multivesicular 21.4 42 0.0013 12.7 5.4 27 336-362 19-45 (218)
151 >1t98_A KICB protein, chromoso 21.3 43 0.0013 12.7 6.5 67 302-373 11-77 (170)
152 >1u0i_A IAAL-E3; coiled-coil, 21.2 43 0.0013 12.7 2.1 20 347-366 2-21 (26)
153 >3hd7_B Syntaxin-1A; membrane 21.0 43 0.0013 12.7 6.1 21 341-361 31-51 (109)
154 >1m5q_A SMAP3, small nuclear r 20.9 43 0.0013 12.7 1.6 45 276-320 8-61 (63)
155 >2nps_B Syntaxin 13, vesicle-a 20.7 44 0.0013 12.6 5.9 37 334-370 9-45 (71)
156 >2zue_A Arginyl-tRNA synthetas 20.5 29 0.00085 14.0 0.4 65 301-365 2-68 (94)
157 >2f95_B Sensory rhodopsin II t 20.4 25 0.00073 14.5 0.0 27 339-365 127-153 (163)
158 >1go4_E MAD1 (mitotic arrest d 20.3 44 0.0013 12.6 4.4 31 336-366 66-96 (100)
159 >3ghg_B Fibrinogen beta chain; 20.2 45 0.0013 12.6 5.4 55 304-358 49-108 (117)
160 >2nov_A DNA topoisomerase 4 su 20.1 45 0.0013 12.5 3.9 30 336-365 118-147 (159)
No 1
>>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1} (A:)
Probab=99.69 E-value=6.9e-18 Score=156.89 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=83.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCC-CCCCCCEEEEEEHHHHHHHHHHHEEC------------------
Q ss_conf 03776642111452077898620725888535457-78543402325578887663344106------------------
Q gi|254781130|r 260 SDERLKKVHGESSASAREIIEQLKFIDFNYLPESG-MDSELRYLIGFSENNLKEINEVFVDT------------------ 320 (378)
Q Consensus 260 SD~rlK~~i~~~~~~~l~~i~~l~~~~~~~~~~~~-~~~~~~~~~G~iAqev~~v~p~~v~~------------------ 320 (378)
||+|||+||.++...+|++|++|+|++|.||.+.. ..+..+.++|||||||++++|++|..
T Consensus 1 SD~RlK~~I~~i~~~~L~~i~~l~~~~y~~k~~~~~~~~~~~~~~G~IAQe~~~i~p~~v~~~~d~~~~~~~~~~~~~~~ 80 (129)
T 3gud_A 1 SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEGLSAFDYGLVGYDEWEATEDE 80 (129)
T ss_dssp --CCCCCSCCSCCHHHHHHHTTCCCEEECCHHHHHHHGGGSCCEEECCHHHHHHHHHHTTCCGGGGTSEEEEECCCCCCE
T ss_pred CCHHHCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 96513479833985899999708968988634433467787513141689998741203777443014750455556664
Q ss_pred -------------CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------------76603136777599999999999999999999999
Q gi|254781130|r 321 -------------IGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMID 355 (378)
Q Consensus 321 -------------~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~ 355 (378)
..+.++++|+.|+++|+++||||.++|++|+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~i~~l~~~i~~Le~~l~ 128 (129)
T 3gud_A 81 YDSEGNLVEKGREAGNIYSIRPTECQWLEMACMRRKLERLSLEHHHHH 128 (129)
T ss_dssp ECSSSCEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHTTC-------
T ss_pred CCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 366676145673020032073999999999999999999986432357
No 2
>>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F} (A:109-200,A:241-275)
Probab=99.44 E-value=1.2e-14 Score=132.17 Aligned_cols=82 Identities=7% Similarity=0.022 Sum_probs=68.4
Q ss_pred EEEEEEHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCC-CCCCCCEEEEEEHHHHHHHHHHHEECCCCCEEECHHHH
Q ss_conf 38998703776642111452077898620725888535457-78543402325578887663344106766031367775
Q gi|254781130|r 254 GCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESG-MDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVI 332 (378)
Q Consensus 254 ~~~~~~SD~rlK~~i~~~~~~~l~~i~~l~~~~~~~~~~~~-~~~~~~~~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l 332 (378)
+.+..+||+|||+||+++...+|++|++|+|++|+||.+.. .....+.++|||||||++|+|++|.+..+++.++|..|
T Consensus 8 ~~~i~tSD~RlKtnI~~i~~~~Ld~I~~L~~vtY~~k~~~e~~~~~~r~~~G~IAQev~ev~Pe~V~~~~d~~~~dy~~l 87 (127)
T 3gw6_A 8 SNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDENSTNCRYAVL 87 (127)
T ss_dssp SCCEEECTTCCBCCCBCCCHHHHHHHTTCCCEEECBHHHHHHHGGGSCBEEECCHHHHHHHHHHTTSSCSCC--CCBTTE
T ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 76464457201247655887999999837977988766433357765320141030244431110455555653213333
Q ss_pred HHH
Q ss_conf 999
Q gi|254781130|r 333 IPH 335 (378)
Q Consensus 333 ~~~ 335 (378)
.+.
T Consensus 88 ~~~ 90 (127)
T 3gw6_A 88 CYD 90 (127)
T ss_dssp EEE
T ss_pred ECC
T ss_conf 055
No 3
>>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} (A:)
Probab=88.71 E-value=1.5 Score=23.89 Aligned_cols=38 Identities=13% Similarity=0.285 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999987555
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
-..+.-++|+.+|+.|+++|..+++++++|++++.++.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~el~~Lae~~~ 80 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999889999999999999999999998
No 4
>>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens} (A:)
Probab=87.92 E-value=1 Score=25.08 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999999999999999999999999999987555
Q gi|254781130|r 332 IIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 332 l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
+--.+++.++.-.++|.+|+.++..++++|++|+...-+.+
T Consensus 12 lq~~~~~~l~~kd~rI~ELE~~L~~kd~EI~eLrs~LDK~q 52 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999997799999999998733899999999998511
No 5
>>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} (A:)
Probab=87.42 E-value=2.2 Score=22.63 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=43.8
Q ss_pred HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88876633441067660313677759999999999999999999999999999999999987555
Q gi|254781130|r 308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
.++..++|...... -.+-..+.-..++=|++|.++++.|+++++++..++..|...++-+.
T Consensus 26 ~~Lr~llP~~~~~~----k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 86 (88)
T 1nkp_A 26 FALRDQIPELENNE----KAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHTTCGGGTTCT----TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998679987888----77899999999999999999999999999999999999999999754
No 6
>>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 2r9a_A (A:129-235)
Probab=85.62 E-value=2.7 Score=21.96 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6777599999999999999999999999999999999999875
Q gi|254781130|r 328 NPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 328 ~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
=|..|+-+|+.-+.+|..++.+|-+.|..++.|+++-|.-=.+
T Consensus 5 ~~~~L~~Pll~~~~~L~~q~~eL~~LL~kKD~EIqqYr~eGa~ 47 (107)
T 2qm4_A 5 VSQHLIRPLXGXSLALQCQVRELATLLHXKDLEIQDYQESGAT 47 (107)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 9999999999999999999999999998758999998742768
No 7
>>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} (A:)
Probab=84.68 E-value=2.7 Score=21.97 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999987555
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
..+.-++|+.+|+.|+++|.+++++.++|.++...++
T Consensus 36 aL~EN~~Lh~~ie~l~eEi~~L~~en~~L~Ev~~~~~ 72 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999888999999999999999999999
No 8
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1563-1630)
Probab=83.24 E-value=1.9 Score=23.05 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7759999999999999999999999999999999
Q gi|254781130|r 330 SVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQD 363 (378)
Q Consensus 330 ~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~ 363 (378)
+-.+|++|.-++|...+|+.|++.+.+.+++.+.
T Consensus 31 DfamPY~Iqv~~e~~~ki~~L~k~~~~r~~~~~~ 64 (68)
T 1xi4_A 31 DFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQA 64 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4424799999999999999999767888766542
No 9
>>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} (A:)
Probab=82.56 E-value=3.5 Score=21.04 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999998755543
Q gi|254781130|r 333 IPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378)
Q Consensus 333 ~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378)
|.-|---||||+++.+.|+.-++++++-..+|..++.+++-+
T Consensus 9 VYaLkDqV~eL~~e~k~lkk~leeE~kaRk~LE~~vrk~lk~ 50 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999988889999999999999999987
No 10
>>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus} (A:)
Probab=81.94 E-value=3.7 Score=20.88 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999998755543
Q gi|254781130|r 333 IPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378)
Q Consensus 333 ~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378)
|.-|---+|||+++.+.|+.-++++++-..+|..++.+++-+
T Consensus 12 VYaLkDqV~eL~~e~k~lkk~leeEqkARk~LE~~vrk~lk~ 53 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKXKKSLEEEQRARKDLEKLVRKVLKN 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999988889999999999999999876
No 11
>>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} (A:)
Probab=80.40 E-value=3 Score=21.52 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999999999999999999999999999999999998755
Q gi|254781130|r 332 IIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 332 l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
-+-.|-.-+++|..++..|+.+|..+..++..|..++..+
T Consensus 37 ~~~~Le~~~~~L~~e~~~L~~~~~~l~~e~~~lr~~l~~l 76 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5068888899987325899999999999999999999866
No 12
>>1a02_F FOS, AP-1 fragment FOS; transcription factor, NFAT, NF-AT, FOS-JUN, quaternary protein-DNA complex, transcription synergy; HET: DNA; 2.70A {Homo sapiens} (F:)
Probab=80.36 E-value=3.6 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999987
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
|++|..+|+.|+++..++..++..|+..+.
T Consensus 25 ~~~Le~~v~~L~~~~~~L~~~~~~l~~e~~ 54 (56)
T 1a02_F 25 TDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 987799999999999999999999999986
No 13
>>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} (B:)
Probab=79.73 E-value=4.3 Score=20.35 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=37.9
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13677759999999999999999999999999999999999987555
Q gi|254781130|r 326 APNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 326 ~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
-.+-..+.-..++-|++|.++++.|+.+.+.+..++..|+..++.+.
T Consensus 35 k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 81 (83)
T 1nkp_B 35 KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88799999999999999999999999999999999999999998746
No 14
>>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} (B:)
Probab=78.84 E-value=4.6 Score=20.16 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999987
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
+++|.+++++|++++=.++..+..|++...
T Consensus 3 vkqlkakveelksklwhlknkvarlkkkna 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 889999999999999999999999986153
No 15
>>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} (A:)
Probab=78.39 E-value=4.7 Score=20.06 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=42.8
Q ss_pred HHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887663344106766031367775999999999999999999999999999999999998755
Q gi|254781130|r 309 NLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 309 ev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
++..++|..- .-.-.+-..+.-..++-|++|..+++.|..+++.+..+...|+..++-|
T Consensus 22 ~L~~llP~~~----~~~k~sK~~iL~~a~~yI~~L~~~~~~l~~~~~~l~~~~~~l~~~~~~L 80 (80)
T 1nlw_A 22 KLKGLVPLGP----DSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHSSCCCS----SSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9997764577----7565669999999999999999999999999999999999999998629
No 16
>>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} (A:)
Probab=77.53 E-value=4 Score=20.57 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=15.3
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999---999999999999999999999999
Q gi|254781130|r 338 KAIQE---LLQEVKELRDMIDKQNEEHQDVQD 366 (378)
Q Consensus 338 ~aiqe---l~~~i~~l~~~i~~~~~~~~~l~~ 366 (378)
+++|| |+.+|+.-.++|..++++.++|++
T Consensus 4 ~~LqENEKLHkeie~kd~eIa~Lk~EN~eL~e 35 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89988699999998613899999982298886
No 17
>>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} (A:)
Probab=74.96 E-value=4.9 Score=19.92 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999987
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
+|+|.+++++|++++=-++.++..|++-..
T Consensus 3 vkql~a~vee~~s~~whl~n~varl~k~na 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 889999999999999999989999986145
No 18
>>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} (A:)
Probab=74.62 E-value=5.9 Score=19.34 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999987555
Q gi|254781130|r 333 IPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 333 ~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
+--|-.-+.+|..+++.|+.+++.+.+++..|+.++..+.
T Consensus 38 ~~~Le~~~~~L~~e~~~L~~~~~~l~~e~~~l~~~l~~l~ 77 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0688878999873258999999999999999999999686
No 19
>>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} (A:)
Probab=74.33 E-value=5.9 Score=19.29 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999987
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
--|..++.+|+++++.+.+|..+||....
T Consensus 22 EaLrlEl~eLkqK~e~L~eEN~eLK~kL~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999987
No 20
>>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} (A:39-159)
Probab=74.07 E-value=6 Score=19.24 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999
Q gi|254781130|r 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQD 363 (378)
Q Consensus 334 ~~li~aiqel~~~i~~l~~~i~~~~~~~~~ 363 (378)
..|.+.+++|.++|+.|++++.+..+++++
T Consensus 81 ~~L~~~~~~lk~~i~~le~~~~~~~~~l~~ 110 (121)
T 1wle_A 81 QSLRARGREIRKQLTLLYPKEAQLEEQFYL 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999
No 21
>>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} (A:)
Probab=73.03 E-value=6.4 Score=19.07 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999998
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
-|---+|||..+..+|+++|..++.|.+-|.+++
T Consensus 7 ~LE~r~k~Le~knseLEerisTLqnEN~MLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999866999999999982589999986
No 22
>>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} (A:)
Probab=72.95 E-value=6.4 Score=19.05 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999998755
Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 339 aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
-++||..++.+|+.+..++..+++.|+.-+..+
T Consensus 23 ~~~~Le~~v~~L~~e~~~L~~~~~~l~~e~~~l 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999
No 23
>>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} (D:)
Probab=72.88 E-value=6.4 Score=19.04 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999998
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
-|-..+++|..+++.|+.+++.+..++..|++++
T Consensus 26 ~Le~~~~~L~~e~~~L~~~~~~l~~E~~~Lr~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999866
No 24
>>1c1g_A Tropomyosin; 7.00A {Sus scrofa} (A:208-284)
Probab=70.74 E-value=7.1 Score=18.70 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999875554
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
..=+.||.|...|+.|++++...++++..+++++-.-++
T Consensus 34 fAERsV~kLek~vD~LED~L~~eKek~k~i~~eLD~Tl~ 72 (77)
T 1c1g_A 34 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALN 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999
No 25
>>3i1g_A General control protein GCN4; leucine zipper, peptide, synthetic peptide, helix, double helix, activator, amino-acid biosynthesis, DNA- binding; 1.60A {Synthetic} PDB: 2ahp_A* 2o7h_A (A:)
Probab=70.00 E-value=4.2 Score=20.46 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999987
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
+.|.++|++|-+++.++..|+..|+.++.
T Consensus 3 ~qlEdkveElL~kn~~lEnEvarlk~lig 31 (33)
T 3i1g_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 67899999999988768889999999856
No 26
>>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} (A:)
Probab=69.82 E-value=6.7 Score=18.89 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
++||..++..|+.+...+..++..|+..
T Consensus 32 ~~~Le~~v~~L~~en~~L~~e~~~l~~e 59 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999997
No 27
>>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} (A:)
Probab=69.53 E-value=2.9 Score=21.70 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999987555
Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
+.|-.|+++|.+|.+++.++..|...|+....--+
T Consensus 14 EEVevLke~I~eL~~~~~~Le~EN~~Lk~~aspeq 48 (77)
T 1dip_A 14 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQ 48 (77)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999999999999999999995189999
No 28
>>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens} (C:)
Probab=69.33 E-value=7.6 Score=18.49 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999987555
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
-||.-|-||+.+.+-|+++++..++....|+.++..+-
T Consensus 34 DLI~kvDeLt~E~e~l~~El~al~~~k~rl~~ri~elE 71 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999721699999999999999999999999999
No 29
>>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protein secretion, microbial pathogenesi; HET: C8E; 2.30A {Haemophilus influenzae} (A:)
Probab=68.59 E-value=7.6 Score=18.49 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999875
Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
.-++.+.+.++.++++|++++.++.+|++.++.
T Consensus 25 ~ql~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~ 57 (129)
T 2gr7_A 25 SQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADA 57 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999876899999999999999999999
No 30
>>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A (A:1-113)
Probab=68.36 E-value=7.9 Score=18.34 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999875554
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
+++|.+++..|++++.++.++...+++.+..++.
T Consensus 71 ~~~l~~e~~~lk~~l~~le~~~~~~~~~~~~lll 104 (113)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (113)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999888776
No 31
>>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} (A:)
Probab=65.99 E-value=8.7 Score=18.01 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDV 364 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~~~~l 364 (378)
-|+|+-+.|++++.-|++++..+++|...|
T Consensus 31 qLmkvN~nls~Elr~lQ~~~~~Lq~ENs~L 60 (63)
T 2w6a_A 31 QLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999997877599999999999999774530
No 32
>>1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} (A:)
Probab=65.91 E-value=8.7 Score=18.00 Aligned_cols=29 Identities=7% Similarity=0.253 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
++.+..||++|.+++--+..++..|++++
T Consensus 7 mkq~edKieellsknYHlENevARlkkLv 35 (38)
T 1ihq_A 7 LEAVRRKIRSLQEQNYHLENEVARLKKLV 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999989987456898999999984
No 33
>>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} (E:)
Probab=65.31 E-value=9 Score=17.92 Aligned_cols=36 Identities=8% Similarity=0.034 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999875
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
-|-.-+++|.++++.|+.++..+..++..|...+..
T Consensus 33 ~Le~~v~~L~~~~~~L~~~~~~l~~e~~~l~~~~~~ 68 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999887359986444310319899999999999864
No 34
>>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107)
Probab=65.18 E-value=9 Score=17.90 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999987555
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
.++|.+++.+|+++|.++.++...+++.++.++
T Consensus 42 ~~~l~~e~~~lk~~i~~le~~~~~~~~~~~~~l 74 (83)
T 1ses_A 42 KEALIARGKALGEEAKRLEEALREKEARLEALL 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999998867999988776653
No 35
>>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper; HET: DNA; 2.30A {Homo sapiens} (A:)
Probab=64.56 E-value=9.2 Score=17.82 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=38.4
Q ss_pred HHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88766334410676603136777599999999999999999999999999999999999
Q gi|254781130|r 309 NLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 309 ev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
++..++|..- .-.+-..++-..|.=||.|..+++.|+.+++.+.++++.++.+
T Consensus 27 ~L~~liP~~~------~k~~K~~iL~~ai~yI~~L~~~~~~l~~~~~~l~~~~~~~~~~ 79 (82)
T 1am9_A 27 ELKDLVVGTE------AKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHTCSS------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986578876------7676999999999999999999999999999999999888976
No 36
>>2j1d_G DAAM1, disheveled-associated activator of morphogenesis 1; alternative splicing, coiled coil, actin assembly, formin, FH2 domain, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A (G:190-483)
Probab=64.36 E-value=9.3 Score=17.79 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 75999999999999999
Q gi|254781130|r 331 VIIPHLAKAIQELLQEV 347 (378)
Q Consensus 331 ~l~~~li~aiqel~~~i 347 (378)
.++.-++..++...+++
T Consensus 190 ~~~~~F~~~~~~a~~~~ 206 (294)
T 2j1d_G 190 GIFDQFLQAVSEAKQEN 206 (294)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 37
>>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} (A:)
Probab=63.68 E-value=8.1 Score=18.25 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999987555
Q gi|254781130|r 343 LLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 343 l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
-.+.|++|+.+|.++..+++.|+..+..+.
T Consensus 20 kk~~~~~Le~~v~~L~~en~~L~~~~~~l~ 49 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999
No 38
>>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} (A:)
Probab=62.37 E-value=10 Score=17.54 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88876633441067660313677759999999999999999999999999999
Q gi|254781130|r 308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEE 360 (378)
Q Consensus 308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~ 360 (378)
+++..++|.... .-.+-..++-..|+=|++|.+++++|+++++++.++
T Consensus 32 ~~L~~liP~~~~-----~k~sK~~iL~~Ai~yI~~L~~~~~~l~~~~~~l~~~ 79 (80)
T 1hlo_A 32 HSLRDSVPSLQG-----EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHSGGGTT-----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 999851552121-----688999999999999999886011077769988744
No 39
>>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae} (A:)
Probab=62.03 E-value=10 Score=17.49 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999
Q gi|254781130|r 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 334 ~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
..|-+++++-..+|..|++.|.-..+..+.|-+-
T Consensus 21 ~~L~~eL~~Ke~eI~~L~evi~lknKd~ErLNDE 54 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRLKEVIALKNKNTERLNDE 54 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999887899999999997602567886288
No 40
>>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} (A:)
Probab=61.79 E-value=10 Score=17.46 Aligned_cols=24 Identities=4% Similarity=0.297 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599999999999999999999999
Q gi|254781130|r 332 IIPHLAKAIQELLQEVKELRDMID 355 (378)
Q Consensus 332 l~~~li~aiqel~~~i~~l~~~i~ 355 (378)
+.|....-|+|+...|..++..|+
T Consensus 6 ~~~~f~~~v~~i~~~i~~I~~~i~ 29 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 699999999999999999999999
No 41
>>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} (A:)
Probab=61.48 E-value=10 Score=17.42 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999987
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
|-.-+++|..+++.|+.++..+..++..|+.++.
T Consensus 28 Le~~~~~l~~~~~~L~~e~~~l~~e~~~lr~~l~ 61 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999889999999999999976
No 42
>>1czq_A IQN17, fusion protein between the hydrophobic pocket of HIV GP41 and GCN4-PIQI; envelope glycoprotein, coiled coil, viral protein/viral protein inhibitor complex; HET: DAR DHI DTR; 1.50A {Saccharomyces cerevisiae} (A:)
Probab=61.30 E-value=10 Score=17.40 Aligned_cols=30 Identities=10% Similarity=0.303 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999987
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
+|++.++|+++.+++.....|+..+|+++-
T Consensus 3 MKQiEDkiEEilSK~yhiENEiARiKKL~q 32 (46)
T 1czq_A 3 MKQIEDKIEEIESKQKKIENEIARIKKLLQ 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 668889999999988888889999999999
No 43
>>1lwu_A Fibrinogen alpha-1 chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} (A:)
Probab=60.63 E-value=11 Score=17.32 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999998755
Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 339 aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
...+|..+|+.||-+|.+|-+.+..||.-+..-
T Consensus 23 vsedLrrrI~~LkrKV~~qvq~i~~Lq~nVr~Q 55 (119)
T 1lwu_A 23 VLRELERRIIHLQRRINMQLQQLTLLQHNIKTQ 55 (119)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999989999
No 44
>>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} (A:)
Probab=60.40 E-value=11 Score=17.29 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999875
Q gi|254781130|r 333 IPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 333 ~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
+..+=..|.+|++.|-.++.+|+.+.++++.|.+++..
T Consensus 23 lAfqe~tie~Ln~vv~~Qq~~I~~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 23 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999997
No 45
>>1fos_E P55-C-FOS proto-oncogene protein; coiled-coil, DNA-binding protein, heterodimer, transcription/DNA complex; HET: DNA; 3.05A {Homo sapiens} (E:)
Probab=60.03 E-value=11 Score=17.25 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999875
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
+++|..++..|+++...+..++..|+.-+..
T Consensus 24 ~~~Le~~v~~l~~~n~~L~~e~~~l~~e~~~ 54 (62)
T 1fos_E 24 TDTLQAETDQLEDEKSALQTEIANLLKEKEK 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999
No 46
>>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, tetramer, viral protein, transferase; 1.90A {Sendai virus} (A:)
Probab=58.86 E-value=11 Score=17.11 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=43.4
Q ss_pred CEEECHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0313677----7599999999999999999999999999999999999875554311
Q gi|254781130|r 324 YLAPNPS----VIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQK 376 (378)
Q Consensus 324 ~~~~~~~----~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~ 376 (378)
.+.+||. .|-+++|-+-+.+..|+++-+.++...+++++.+.|.-.|+---||
T Consensus 41 L~~a~~a~~~~~l~Gl~i~v~~~~~~Kv~e~~~~l~~iq~~~~~~~d~hkR~~E~Qk 97 (115)
T 1ezj_A 41 LKSANYAEMTFNVCGLILSAEKSSARKVDENKQLLKQIQESVESFRDIYKRFSEYQK 97 (115)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 832358999999999998534402310788999999999999988999999999689
No 47
>>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} (A:1-86,A:170-182)
Probab=57.97 E-value=7 Score=18.75 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQ 365 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~ 365 (378)
.+++-||..+|+.|-.+|.-++ |.|.||
T Consensus 21 ~k~~edLk~qid~l~~Evn~LK-E~QALQ 48 (99)
T 1htn_A 21 TKMFEELKSRLDTLSQEVALLK-EQQALQ 48 (99)
T ss_dssp ------CHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHCCC
T ss_conf 3689999999999999999865-442025
No 48
>>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis} (A:)
Probab=57.57 E-value=12 Score=16.95 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999998755
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
.+|.++.++.+.+|+++.++.+++++++..+
T Consensus 272 ~~L~e~A~~ie~~i~e~~~~~~e~~~~v~~l 302 (351)
T 2wam_A 272 AVLAEAAAEVQAKIDEQVQASAEVAQVVAAL 302 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 8999999999999999985298999999999
No 49
>>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} (B:)
Probab=56.85 E-value=12 Score=16.87 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999875554
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
.+-|+||.++.+....++.+..++.+.|-+.+..++.
T Consensus 91 ~~rI~~Le~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999
No 50
>>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} (B:)
Probab=56.77 E-value=12 Score=16.86 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999875554
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
.+-|+||.++.+....++++..++.+.|-+.+..++.
T Consensus 91 ~~rI~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~l~ 127 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999
No 51
>>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} (A:149-252)
Probab=54.45 E-value=13 Score=16.59 Aligned_cols=40 Identities=5% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999998755543116
Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQKF 377 (378)
Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~ 377 (378)
..++.|..+-+.++.+|......++.|...-..++.++..
T Consensus 17 ~~v~~ll~~h~~f~~ei~~~~~~v~~l~~~~~~L~~~~~~ 56 (104)
T 1hci_A 17 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYH 56 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 9999999887766656777677899999999986212311
No 52
>>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} (A:)
Probab=53.69 E-value=14 Score=16.51 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=26.8
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3136777599999999999999999999999999999999999875
Q gi|254781130|r 325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 325 ~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
++--+.+|.-..=.+-++|.++|++|..+|+.+.+--...|-+-|+
T Consensus 34 Ls~TFaRLcqqVD~t~~~LeeEI~~L~~eI~~LE~iqs~aK~LRNK 79 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNK 79 (96)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998999999999999999999999999999999878
No 53
>>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} (A:121-214)
Probab=53.37 E-value=14 Score=16.47 Aligned_cols=41 Identities=7% Similarity=0.166 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999999999998755543116
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQKF 377 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~ 377 (378)
+..++.|..+-+.|+.+|+.....+..|.+.-..+..+..+
T Consensus 19 ~~~v~~~l~~h~~l~~ei~~~~~~~~~v~~~~~~L~~~~~~ 59 (94)
T 1s35_A 19 LEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNL 59 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999999999988998789999999999999873994
No 54
>>2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} (A:)
Probab=52.74 E-value=14 Score=16.40 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=35.1
Q ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6031367775999999999999999999999999999999999998755
Q gi|254781130|r 323 GYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 323 ~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
+.+.-.|+++-...|+.=||..+-.-.|-++|-++++|...|-+|-++-
T Consensus 29 ~~YkdAYSRINaIVIEGEqeA~~Nyi~la~llP~~~dEL~rLakME~rH 77 (244)
T 2oc5_A 29 DRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKXEXRH 77 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8889999874025674507788869999987830199999999999988
No 55
>>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} (A:189-373)
Probab=52.65 E-value=14 Score=16.39 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 99999999999999999--999999999987555
Q gi|254781130|r 341 QELLQEVKELRDMIDKQ--NEEHQDVQDMSNTPL 372 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~--~~~~~~l~~~~~~~~ 372 (378)
+++.++|+.|++++++. ..+.+.|++++.+|.
T Consensus 151 ~~I~~Ri~~l~~~~~~t~s~~~~ekL~eRlakLs 184 (185)
T 1kp8_A 151 AAIQGRVAQIRQQIEEATSDYDREKLQERVAKLA 184 (185)
T ss_dssp HHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 8898899999999871375788999998864258
No 56
>>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} (A:)
Probab=52.00 E-value=15 Score=16.31 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999999999999999999999999999999999998
Q gi|254781130|r 332 IIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 332 l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
+.|-|+.-++|+.+...+|++.+.+|.+|+.-|+.-+
T Consensus 3 ~~~~li~q~~~~nq~L~Elre~lrqQVKE~sflrNTI 39 (45)
T 1mz9_A 3 LAPQMLRELQETNAALQDVRELLRQQVKEITFLKNTV 39 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4499999999999999999999999999999999999
No 57
>>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} (A:)
Probab=51.78 E-value=15 Score=16.29 Aligned_cols=46 Identities=9% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7759999999999999999999999999999999999987555431
Q gi|254781130|r 330 SVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ 375 (378)
Q Consensus 330 ~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~ 375 (378)
++|-.-|=+.+...+++++.|+..=+++.+-.+.|++|++++..++
T Consensus 10 DKLrrrlkE~~~q~qaEl~sL~~t~~eL~~G~~kL~~~i~kl~~E~ 55 (78)
T 3iv1_A 10 DKLRWRXKEEXDRAQAELNALKRTEEDLKKGHQKLEEXVTRLDQEV 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998867999999999999825688999999999889
No 58
>>2hy6_A General control protein GCN4; coiled coil, protein design, parallel heptamer, protein structure, biosynthetic protein; 1.25A {Saccharomyces cerevisiae} (A:)
Probab=51.62 E-value=15 Score=16.27 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
+|+|.++|++|-+++--+..++..|++.+
T Consensus 3 mkqledkveellsk~yhlene~arlkklv 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78899999999985377899999999985
No 59
>>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} (A:379-476)
Probab=51.57 E-value=15 Score=16.27 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
-+.++|++.++|..++..+++.....+.+++-
T Consensus 26 QL~~lk~~~~~i~~~k~~L~~ie~l~~~~qEa 57 (98)
T 1hci_A 26 QMNQLKQYEHNIINYKNNIDKLEGDHQLIQEA 57 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHH
T ss_conf 99999998753400125401112609999999
No 60
>>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} (A:)
Probab=51.45 E-value=15 Score=16.25 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999999999999999999999999999987
Q gi|254781130|r 332 IIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 332 l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
++...++..++-.+++..+.++|++-+..++.|.+|++
T Consensus 40 l~k~~~~~~~~~~e~~~k~~~eLe~v~~n~~lL~eML~ 77 (158)
T 1naf_A 40 LIKEXVQEDQKRXEKISKRVNAIEEVNNNVKLLTEXVX 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987028899799999999999999989999999997
No 61
>>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} (A:)
Probab=51.04 E-value=15 Score=16.21 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999998755
Q gi|254781130|r 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 334 ~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
--|-.-||-|..||+.|.+.|+.+..+++.-|+.-+|.
T Consensus 7 ~qlssdvqtln~Kvdqls~Dvna~r~dvqaaK~eAaRa 44 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89888999999999999888999889999988899999
No 62
>>1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} (A:)
Probab=50.81 E-value=15 Score=16.18 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999--9999999999875554
Q gi|254781130|r 341 QELLQEVKELRDMIDKQ--NEEHQDVQDMSNTPLN 373 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~--~~~~~~l~~~~~~~~~ 373 (378)
+++.++|+.|+.+++.. ..+.+.|++++.+|..
T Consensus 167 ~~i~~Ri~~l~~~~~~~~s~~~kekL~eRlakLsg 201 (203)
T 1kid_A 167 AAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAG 201 (203)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999999999986899999999999998737
No 63
>>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A (A:52-154)
Probab=49.91 E-value=16 Score=16.08 Aligned_cols=61 Identities=18% Similarity=0.003 Sum_probs=38.9
Q ss_pred EEEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0232557888766334410676603136777599999999-999999999999999999999999999875554
Q gi|254781130|r 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAI-QELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 301 ~~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~ai-qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
+..||.=.|+++++.-+-.+++.. ...+ +=+.+++.+++++|.++++..+.|+.++...+-
T Consensus 13 r~lGFSL~EI~~ll~~~~~~~~~~------------~~~~~~ll~~kl~ei~~ki~eL~~l~~~L~~~~~~~~~ 74 (103)
T 2zhg_A 13 QRIGIPLATIGEAFGVLPEGHTLS------------AKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCL 74 (103)
T ss_dssp HHHTCCHHHHHHHHCC-----CCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 995998999999999726313567------------99999999999999999999998529999999749998
No 64
>>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C (C:74-143)
Probab=49.82 E-value=16 Score=16.07 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 677759999999999999999999999999999999999987555
Q gi|254781130|r 328 NPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 328 ~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
.|++++.--=.-|++|.+....=+.+|-.+++++-+|+.+-..||
T Consensus 22 kyE~~il~hE~~I~~Lqei~~sN~qkI~~Lkqk~~qLe~~CqePC 66 (70)
T 3ghg_C 22 KYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPC 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 888999999999998888887766777889999999987542444
No 65
>>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic} (A:)
Probab=49.38 E-value=16 Score=16.03 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEH 361 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~ 361 (378)
-+.+..|++-+.+|+++++.+.+.+
T Consensus 5 eee~r~l~a~vq~lq~rldrleetv 29 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999877
No 66
>>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp} (A:)
Probab=49.33 E-value=16 Score=16.02 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=46.3
Q ss_pred EEEEEHHHHHHHHHHHEEC----CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2325578887663344106----7660313677759999999999999999999999999
Q gi|254781130|r 302 LIGFSENNLKEINEVFVDT----IGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQ 357 (378)
Q Consensus 302 ~~G~iAqev~~v~p~~v~~----~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~ 357 (378)
+.|+|.++..+-+-.++.- .-+|..||...+-..+-+.+.++.+-++++.+.++.+
T Consensus 77 ~~~ii~~~~~~~l~~i~g~RN~lvH~Y~~id~~~v~~~i~~~l~~l~~fi~~i~~~l~~~ 136 (144)
T 1ylm_A 77 DEKVVTEKEGDELKKLIAYRKTLVQQYLLADSGELYRLIKAHQTALQDFPKRIRSYLETE 136 (144)
T ss_dssp HTTSSCHHHHHHHHHHHTTHHHHHTCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 879978899999999997887775023445799999999972899999999999999876
No 67
>>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C (A:)
Probab=48.94 E-value=16 Score=15.98 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999998755543
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378)
.|-..|-.|..-|++|++++..++++....+++...-||.
T Consensus 9 ~~ERsVaKLEKtIDDLEDely~~K~k~k~iseeLD~aLnD 48 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALND 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999735688899999998888867999989887
No 68
>>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural genomics, PSI, protein structure initiative; 1.60A {Helicobacter pylori 26695} (A:)
Probab=48.21 E-value=16 Score=15.90 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQD 363 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~ 363 (378)
.|.++++|+.||+.|+.+++-..+
T Consensus 54 l~qid~ev~kLK~~IdaLNKiKke 77 (83)
T 1zke_A 54 FTQLSEEVERLKELINALNKIKKG 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998899999999999999999888
No 69
>>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain sequence on AN (alpha-alpha-alpha-beta)...; helix bundle, foldamer, coiled coil, unknown function; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} (A:)
Probab=47.59 E-value=17 Score=15.83 Aligned_cols=29 Identities=3% Similarity=0.223 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
+|++..+|++|-+++-.+..|+..+++++
T Consensus 3 mkq~edkiee~lsk~yhleneiar~kkli 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87999999999999987000899999998
No 70
>>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens} (A:)
Probab=47.50 E-value=17 Score=15.82 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999875
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
-+-++|-..++++|..+|+.+++++++||.+...
T Consensus 44 e~~L~eaekrn~~L~~ei~~l~~e~eeLq~~~d~ 77 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELLQAEGAT 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9998999998999999999999999986656433
No 71
>>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} (A:)
Probab=47.28 E-value=9.4 Score=17.76 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999987
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378)
.+|..+|+.|+-+|.+|-+.+..||.-+.
T Consensus 3 edLrrrI~~LkrKV~~qv~~i~~Lq~nIr 31 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNVR 31 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67899999999999999999999999899
No 72
>>1sjp_A Chaperonin60, 60 kDa chaperonin 2; chaperone, structural genomics, PSI, protein structure initiative; 3.20A {Mycobacterium tuberculosis} (A:148-329)
Probab=46.97 E-value=17 Score=15.76 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf 99999999999999999--99999999998755
Q gi|254781130|r 341 QELLQEVKELRDMIDKQ--NEEHQDVQDMSNTP 371 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~--~~~~~~l~~~~~~~ 371 (378)
.++.++|+.|+.+++.- ..+.+.||++..+|
T Consensus 149 ~~i~~Ri~~l~~~~~~s~s~y~kekL~eRlakL 181 (182)
T 1sjp_A 149 DAIAGRVAQIRQEIENSDSDYDREKLQERLAKL 181 (182)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 999879999999986057588999999986504
No 73
>>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} (A:)
Probab=46.84 E-value=17 Score=15.75 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 759999999999999999999999999999999999987555431
Q gi|254781130|r 331 VIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ 375 (378)
Q Consensus 331 ~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~ 375 (378)
.-|.-|=++|++-.+-|.+|++-+.++.--+++||+.+|.-++.+
T Consensus 14 ~~I~~LK~Si~~TNeAV~el~~g~~~la~AV~~iQd~IN~~i~pa 58 (64)
T 1svf_A 14 AAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINSVVSPA 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999864689999998999999686476
No 74
>>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A 1zik_A ... (A:)
Probab=45.63 E-value=18 Score=15.62 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
++.|..+|+++-++|--...|+..+++++
T Consensus 2 mkqledkiee~lskiyh~eneiar~kkli 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26889999999999998689999999885
No 75
>>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C (C:26-92)
Probab=44.29 E-value=19 Score=15.47 Aligned_cols=28 Identities=14% Similarity=0.458 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
.+|..++|+.|+.++.++.+.-+.|.+.
T Consensus 39 ~~~~~~ev~~lr~QlkeLeekF~~Le~~ 66 (67)
T 2p22_C 39 LTDFAGKIHAFRDQFKQLEENFEDLHEQ 66 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6899999999999999999999999999
No 76
>>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} (A:137-189,A:336-413)
Probab=44.05 E-value=19 Score=15.44 Aligned_cols=60 Identities=5% Similarity=0.117 Sum_probs=34.8
Q ss_pred EEEHHHHHHHHHHHEECCC------CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 2557888766334410676------60313677759999999999999999999999999--999999999987555
Q gi|254781130|r 304 GFSENNLKEINEVFVDTIG------GYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQ--NEEHQDVQDMSNTPL 372 (378)
Q Consensus 304 G~iAqev~~v~p~~v~~~~------~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~--~~~~~~l~~~~~~~~ 372 (378)
-+||+=+++|=++-|-+.+ ..+.+ ++--+++.++|++|+.++++. ..+.+.||+++.+|.
T Consensus 22 ~lIa~A~~kVG~~GvItvee~~~~~~~lev---------vEd~~~I~~Ri~qLr~~le~s~s~ydkekL~ERlAkLs 89 (131)
T 1we3_A 22 KLIADAMEKVGKEGIITVEESKSLETELKF---------VEKKEDIEARINGIKKELETTDSEYAREKLQERLAKLA 89 (131)
T ss_dssp HHHHHHHHTTCTTSEEEEEECSSSSCEEEE---------ECCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCEEEEE---------ECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 999999998471124998616886315899---------74889999999988887741672888898888864157
No 77
>>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (C:1-40,C:169-318)
Probab=43.79 E-value=19 Score=15.42 Aligned_cols=96 Identities=11% Similarity=0.125 Sum_probs=52.8
Q ss_pred HHHHHHHHHCCC---CCHHHHHHH---HHCC---EEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHH-----EECCC---
Q ss_conf 037766421114---520778986---2072---588853545778543402325578887663344-----10676---
Q gi|254781130|r 260 SDERLKKVHGES---SASAREIIE---QLKF---IDFNYLPESGMDSELRYLIGFSENNLKEINEVF-----VDTIG--- 322 (378)
Q Consensus 260 SD~rlK~~i~~~---~~~~l~~i~---~l~~---~~~~~~~~~~~~~~~~~~~G~iAqev~~v~p~~-----v~~~~--- 322 (378)
+|.|+|=.+..+ ..++|-+|. |-.| +.|+|.+.-.++. ..=......++++|.- ++...
T Consensus 14 ~~~~v~F~L~~vd~s~ANalRRimiAEKWsPva~v~y~y~P~i~i~~----~~~~~e~cp~~v~~~s~~~~~~~~~~~~~ 89 (190)
T 1twf_C 14 SKDNVDFILSNVDLAMANSLRRVMIAEKWGPAAAIEFEYDPWNKLKH----TDYWYEQDSAKEWPQSKNCEYEDPPNEGD 89 (190)
T ss_dssp CSSEECCEEBSSCHHHHHHHHHHHHHCGGCCEEEEEEEECSSTTSCC----SCCCCSSCHHHHSCCCGGGTTSCCCCSSS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCEECCCEEEEEEECCCCCCCC----CCCCCCCCCHHHCCCCCCEEEECCCCCCC
T ss_conf 79989999978883899999999997255453037875255433344----53331024232187654235861233354
Q ss_pred --------C-C-EEE---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------6-0-313---67775999999999999999999999999999
Q gi|254781130|r 323 --------G-Y-LAP---NPSVIIPHLAKAIQELLQEVKELRDMIDKQNE 359 (378)
Q Consensus 323 --------~-~-~~~---~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~ 359 (378)
+ | +.| ---.---++.+||+.|++|.++|.+.|++..+
T Consensus 90 ~i~v~~~~d~FiF~VES~Gsl~p~~Iv~~Ai~vLk~Kl~~l~~~L~~~~~ 139 (190)
T 1twf_C 90 PFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQ 139 (190)
T ss_dssp CCCTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 05763365489999994588799999999999999999999998643243
No 78
>>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} (A:)
Probab=43.75 E-value=19 Score=15.41 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7759999999999999999999999999999999999987555431
Q gi|254781130|r 330 SVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ 375 (378)
Q Consensus 330 ~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~ 375 (378)
..-|.-|=+++++-.+-|.+|++-+.++.--++.|||.+|.-++.+
T Consensus 16 a~~I~~LK~Si~~TNeAV~el~~g~~~la~Av~~iQd~IN~~i~Pa 61 (63)
T 2fyz_A 16 ARAIAAMKNSIQATNRAVFEVKEGTQRLAIAVQAIQDHINTIMNTQ 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999732367999998999998775202
No 79
>>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:1-189,A:284-312)
Probab=43.62 E-value=19 Score=15.40 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=25.2
Q ss_pred EEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2557888766334410676603136777599999999999999999999999999999999999
Q gi|254781130|r 304 GFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 304 G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
-.|++++.+..|+. ...+.-++..+.--|-+..++..++++.+|-.|+-.++....|++-
T Consensus 146 ~~I~~~L~~l~P~~----~~~y~~N~~~~~~~l~~l~~~~~~~l~~ik~~~~~~~~~~~~~~~~ 205 (218)
T 2o1e_A 146 KNITAQIVKQDPDN----KEYYEKNSKEYIAKLQDLDKLYRTTAKKAEGYIDIXKQNLDALKDS 205 (218)
T ss_dssp HHHHHHHHHHCGGG----HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999997766512----0589999999998755578999874330257999999999999998
No 80
>>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} (C:)
Probab=43.38 E-value=10 Score=17.43 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=25.6
Q ss_pred ECCCCCEEECHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf 067660313677759999999999---9999999999999999
Q gi|254781130|r 319 DTIGGYLAPNPSVIIPHLAKAIQE---LLQEVKELRDMIDKQN 358 (378)
Q Consensus 319 ~~~~~~~~~~~~~l~~~li~aiqe---l~~~i~~l~~~i~~~~ 358 (378)
+....|....++.||-++++-=.| ...+|.+|++-|+.+=
T Consensus 38 d~~~~Y~~lT~dELI~l~lk~~~~l~~k~~~vrELEdYID~LL 80 (107)
T 2gzd_C 38 DATAGYRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLL 80 (107)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7430012368999999999999999988999999999999999
No 81
>>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} (A:)
Probab=43.21 E-value=19 Score=15.35 Aligned_cols=38 Identities=8% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999998755543
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378)
+..+++|..+-+.|+..|+.....+..|.++-..++.+
T Consensus 44 ~~~~~~ll~~h~~l~~~i~~~~~~i~~l~~~~~~l~~~ 81 (129)
T 1wlx_A 44 IEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRI 81 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998898999999999999986
No 82
>>2k48_A Nucleoprotein; viral protein; NMR {Andes virus} (A:)
Probab=42.73 E-value=20 Score=15.30 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDK 356 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~ 356 (378)
..+..++||+++|..+++++.-
T Consensus 32 ~~Ms~leelQ~Eit~hE~QLvi 53 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVT 53 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1187899999999999999999
No 83
>>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} (A:)
Probab=42.70 E-value=20 Score=15.30 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=35.1
Q ss_pred EEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 232557888766334410676603136777599999999999999999999999999999999999875554
Q gi|254781130|r 302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 302 ~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
+.||-=-|+.+++.-+-.+... ....+ .+-+.+++++++.+|.++.+..+.|+++...++.
T Consensus 14 ~lGfsL~EI~~lL~~~~~~~~~----~~~~~-------~~ll~~kl~~i~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 14 QLGFSLESIRELLSIRIDPEHH----TCQES-------KGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HTTCCHHHHHHHHHHHHCGGGC----BHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HCCCCHHHHHHHHHHCCCCCCC----CHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8799899999999742288867----37999-------9999999999999999999999999999973789
No 84
>>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} (A:1-112)
Probab=42.58 E-value=20 Score=15.28 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDV 364 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l 364 (378)
|.+..++|.+++++|+.++.+..++++.+
T Consensus 73 l~~e~~~lk~~l~~le~~~~~~~~~~~~~ 101 (112)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNT 101 (112)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998899999999999999
No 85
>>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} (A:43-154)
Probab=42.03 E-value=20 Score=15.22 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999998
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
-..++++..+++.|+.++.++...+..|...+
T Consensus 65 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~ 96 (112)
T 2ocy_A 65 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999868999999999998999999999999
No 86
>>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (C:1-38,C:171-297)
Probab=41.27 E-value=12 Score=16.91 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=59.9
Q ss_pred EHHHHHHHHHCCCC---CHHHHHHHHH----CCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHEEC-----------
Q ss_conf 70377664211145---2077898620----72588853545778543402325578887663344106-----------
Q gi|254781130|r 259 LSDERLKKVHGESS---ASAREIIEQL----KFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDT----------- 320 (378)
Q Consensus 259 ~SD~rlK~~i~~~~---~~~l~~i~~l----~~~~~~~~~~~~~~~~~~~~~G~iAqev~~v~p~~v~~----------- 320 (378)
.+|+++|=.+..+. .++|-+|.-= -.+.|+|.++-.+++ ...+.-++++.+..|.-|-.
T Consensus 12 ~~~~~i~F~l~~vd~s~ANalRRimiaWsPV~~a~Yky~P~I~i~~---~~~~~~~~~~~e~cp~~v~~~e~~~~~~~~I 88 (165)
T 3h0g_C 12 ISKNSVDFVLTNTSLAVANSLRRVVLAWSPTSAVAFEYDPWNKLQH---TDYWFENDADAEWPKSKNADWEEPPREGEPF 88 (165)
T ss_dssp BCSSEEEEEECSCCHHHHHHHHHHHHSSCCBCCCCCCSSSSCSSCC---SCCCCSSCSTTTSCCCGGGTTCCCCSCCSCC
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHECCCEEEEEEECCCCCCCC---CCCCEECCCCEECCCCCCCEEEECCCCCCEE
T ss_conf 5698899999789837888999999876332025653045433344---5432120452331464331257505456506
Q ss_pred --------------CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------------766031367775999999999999999999999999999999999
Q gi|254781130|r 321 --------------IGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ 365 (378)
Q Consensus 321 --------------~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~ 365 (378)
+.|-+.+. -++.+|++.|++|.++|++.++++.++-...+
T Consensus 89 ~v~~~~d~FiF~VES~Gsl~p~-----~Iv~~Al~iLk~K~~~l~~~L~~~~~~~~~~~ 142 (165)
T 3h0g_C 89 NFQEEPRRFYMDVESVGSIPPN-----EIMVQGLRILQEKLAVLVRDLDEEQPTQLSAN 142 (165)
T ss_dssp CSSCCCCCEEEEEEBCSSSCTT-----TTTHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEECCCEEEEEEEEECCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6660687899999950565999-----99999999999999999987541246544533
No 87
>>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} (A:1-57,A:183-216)
Probab=40.28 E-value=21 Score=15.03 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998755
Q gi|254781130|r 348 KELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 348 ~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
++|++++.++.++..++++-.+.+
T Consensus 58 ~~lk~~l~~le~~~~~~e~el~~~ 81 (91)
T 3err_A 58 EPLRNELQKLEDDAKDNQQKLEAL 81 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 766888999998888888999889
No 88
>>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} (A:134-216)
Probab=39.41 E-value=22 Score=14.94 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999998755543116
Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQKF 377 (378)
Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~ 377 (378)
..++.|..+-+.|+..|......+..|.+.-..++.+..+
T Consensus 9 ~~v~~l~~kh~~~~~~i~~~~~~i~~l~~~~~~L~~~~~~ 48 (83)
T 1u5p_A 9 TGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999999999999999999999999864997
No 89
>>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A (A:40-174)
Probab=38.50 E-value=23 Score=14.84 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999998
Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
...+||.++..+|+....++...+++|+..+
T Consensus 17 ~~~~eL~~~~~eL~~~~~eL~~~~~eL~~~~ 47 (135)
T 2p22_A 17 IDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 47 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999
No 90
>>2gd7_A Hexim1 protein, HMBA-inducible; transcription regulation, transcription elongation, positive transcription elongation factor-B; NMR {Homo sapiens} (A:)
Probab=38.29 E-value=23 Score=14.81 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254781130|r 344 LQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 344 ~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
++++.+|.++|+.+..+++.|..-
T Consensus 67 s~~~~~l~~ei~~Lr~EN~~Lr~E 90 (107)
T 2gd7_A 67 DARVRELELELDRLRAENLQLLTE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 620899999999999999999998
No 91
>>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} (C:55-180)
Probab=38.01 E-value=23 Score=14.78 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999-------9999999999999999987555
Q gi|254781130|r 336 LAKAIQELLQEVKEL-------RDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 336 li~aiqel~~~i~~l-------~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
|-+-+|||.++|..| +.+|..+.-+|.+|..+++-+.
T Consensus 9 L~e~~keLh~~I~~lEeEKyDle~kv~kq~~EI~dL~~rV~dlr 52 (126)
T 1j1e_C 9 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 52 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999988996899999987878999999999972
No 92
>>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purine biosynthesis, alternative splicing; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* (A:402-463)
Probab=37.36 E-value=14 Score=16.40 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEE 360 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~ 360 (378)
||++++|.++.-+....-++
T Consensus 18 Qe~HE~IR~~S~~aa~~vK~ 37 (62)
T 2j91_A 18 QDCHEKIRVLSQQAASVVKQ 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999998863
No 93
>>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} (A:)
Probab=37.35 E-value=23 Score=14.71 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
++.+.++|++|-+++--...|+..+++++
T Consensus 3 mkqiEDkiEEiLSK~yHieNE~ARikkli 31 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77898999999999998888999999986
No 94
>>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacterthermautotrophicus} (A:)
Probab=37.26 E-value=24 Score=14.70 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=36.2
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31367775999999999999999999999999999999999998755
Q gi|254781130|r 325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 325 ~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
.--+...++|-|-+-+..+..+++.|+..+..+.+++..+++-...+
T Consensus 59 v~~~~~e~~~~l~~~~e~l~~~~~~l~~q~~~le~el~~~~~~l~~l 105 (107)
T 1fxk_A 59 IRVAKDELTEELQEKLETLQLREKTIERQEERVXKKLQEXQVNIQEA 105 (107)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41209999999999999999999999999999999999999999997
No 95
>>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece} (A:)
Probab=37.16 E-value=24 Score=14.69 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
...|-||+++|+.|+.+--+.+.+.+||-|.
T Consensus 14 ~~dieeLk~~ikKLnsrA~q~KMdLHDLaE~ 44 (81)
T 3csx_A 14 PEAVADLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 3239999999999988999986147766343
No 96
>>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:)
Probab=36.89 E-value=8.4 Score=18.15 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=5.4
Q ss_pred HHHHHHHHEE
Q ss_conf 8766334410
Q gi|254781130|r 310 LKEINEVFVD 319 (378)
Q Consensus 310 v~~v~p~~v~ 319 (378)
|+|++|+|+.
T Consensus 502 l~~~~p~~~~ 511 (546)
T 2wvr_C 502 LSELLPDWLS 511 (546)
T ss_dssp ----------
T ss_pred HHHHCCCCEE
T ss_conf 9986872069
No 97
>>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} (A:)
Probab=36.34 E-value=24 Score=14.60 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999
Q gi|254781130|r 344 LQEVKELRDMIDKQNEEHQDVQD 366 (378)
Q Consensus 344 ~~~i~~l~~~i~~~~~~~~~l~~ 366 (378)
.+||+++.++|.+++++.+.|-+
T Consensus 7 EQKIedId~qIaeLe~KR~~Lv~ 29 (33)
T 1r48_A 7 EQKIDDIDHEIADLQAKRTRLVQ 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99898799999999999999987
No 98
>>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} (A:222-354)
Probab=35.39 E-value=9.1 Score=17.86 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=7.9
Q ss_pred EEEEHHHHHHHHHHHE
Q ss_conf 3255788876633441
Q gi|254781130|r 303 IGFSENNLKEINEVFV 318 (378)
Q Consensus 303 ~G~iAqev~~v~p~~v 318 (378)
+--|.+...++++++.
T Consensus 52 ~~~i~~~f~~~f~~l~ 67 (133)
T 1w1w_A 52 FDYVSDHLDAIYRELT 67 (133)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999986
No 99
>>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral protein; HET: NAG; 3.05A {Human parainfluenza virus 3} (A:42-212)
Probab=35.02 E-value=25 Score=14.45 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=36.9
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31367775999999999999999999999999999999999998755543
Q gi|254781130|r 325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378)
Q Consensus 325 ~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378)
+...-..-|.-|=++|+.=.+-|.+|++-+.++.--+++|||.+|.-++.
T Consensus 77 qa~~na~~I~~lK~si~~TNeAV~el~~g~~~la~Av~~lQd~IN~~l~p 126 (171)
T 1ztm_A 77 EAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIVP 126 (171)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99885999999999999988999999863443478999899999877666
No 100
>>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} (A:193-374)
Probab=35.01 E-value=14 Score=16.44 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf 999999999999999999--99999999987555
Q gi|254781130|r 341 QELLQEVKELRDMIDKQN--EEHQDVQDMSNTPL 372 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~--~~~~~l~~~~~~~~ 372 (378)
+++.++|+.|+.+++... .+.+.||+++.+|.
T Consensus 148 ~~i~~Ri~~l~~~~~~s~s~~~kekL~eRlakLs 181 (182)
T 1iok_A 148 AEIEARVSQIRQQIEETTSDYDREKLQERVAKLA 181 (182)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 8898889999988863466302666654323568
No 101
>>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=34.91 E-value=25 Score=14.44 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254781130|r 333 IPHLAKAIQELLQEVKELRD 352 (378)
Q Consensus 333 ~~~li~aiqel~~~i~~l~~ 352 (378)
+.-|-..|+++-++|..||.
T Consensus 15 ~~~l~~~I~~QGd~VR~LKa 34 (79)
T 2djv_A 15 IQALMDEVTKQGNIVRELKA 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998999999883
No 102
>>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=34.87 E-value=26 Score=14.43 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999------9999999999999998
Q gi|254781130|r 333 IPHLAKAIQELLQEVKELRD------MIDKQNEEHQDVQDMS 368 (378)
Q Consensus 333 ~~~li~aiqel~~~i~~l~~------~i~~~~~~~~~l~~~~ 368 (378)
+-.|..+|+++-++|.+|+. +|++..++...|+...
T Consensus 11 ~~~l~~~I~~QGd~VR~LKa~kA~k~~i~~aV~~Ll~LK~~l 52 (73)
T 1x59_A 11 RAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQL 52 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999988999999865898889899999999999986
No 103
>>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} (A:1-135)
Probab=34.48 E-value=26 Score=14.39 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254781130|r 341 QELLQEVKELRDMID 355 (378)
Q Consensus 341 qel~~~i~~l~~~i~ 355 (378)
++|...+++-+.+++
T Consensus 92 ~~l~~~~~~r~~~L~ 106 (135)
T 1u4q_A 92 QRIKSMAAARRAKLN 106 (135)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999888999987
No 104
>>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A* (A:307-428)
Probab=34.09 E-value=22 Score=14.97 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 599999999999
Q gi|254781130|r 332 IIPHLAKAIQEL 343 (378)
Q Consensus 332 l~~~li~aiqel 343 (378)
.+--|-.++.|+
T Consensus 65 ~v~~Lk~~~~~~ 76 (122)
T 2wm9_A 65 KVKLLKEVFRQF 76 (122)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 105
>>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} (A:)
Probab=34.02 E-value=26 Score=14.34 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=14.7
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13677759999999999999999999999
Q gi|254781130|r 326 APNPSVIIPHLAKAIQELLQEVKELRDMI 354 (378)
Q Consensus 326 ~~~~~~l~~~li~aiqel~~~i~~l~~~i 354 (378)
..+-..|+--|...+++++.+|..|=+.+
T Consensus 102 ~~~~~ell~eL~~~C~~~q~~i~~li~~~ 130 (186)
T 1oxz_A 102 AGSSEDLMKELYQRCERMRPTLFRLASDT 130 (186)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 74088999999999999999999999874
No 106
>>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} (C:)
Probab=33.26 E-value=27 Score=14.25 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999-------9999999999999999987555
Q gi|254781130|r 336 LAKAIQELLQEVKEL-------RDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 336 li~aiqel~~~i~~l-------~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
|-+-++||.++|..| +.++..|+-+|.+|-.+++-+.
T Consensus 63 L~e~~keLh~~I~~lE~EkYDle~kvkkq~yEI~eL~~rv~dl~ 106 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999997799999998877999999999970
No 107
>>1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} (B:)
Probab=32.76 E-value=22 Score=14.93 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999
Q gi|254781130|r 345 QEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 345 ~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
++|+.|+.-+.+++.++..+|+.
T Consensus 35 dEV~tL~~NL~EL~~E~~~~q~~ 57 (59)
T 1z0j_B 35 DEVEVLTENLRELKHTLAKQKGG 57 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 69999999999999999986379
No 108
>>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} (A:)
Probab=32.55 E-value=28 Score=14.17 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=48.6
Q ss_pred CEEEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40232557888766334410676603136777599999999999999----999999999999999999999875554
Q gi|254781130|r 300 RYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQE----VKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 300 ~~~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~----i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
...+--|.-+|.++.|+...-.+.-....|-.|.-.|.+.+=+|+.- -.+++..=.++.+++|.+.+.+-..+.
T Consensus 17 ~~~I~~i~~~v~~l~~~v~~f~~~~~~~e~~~L~E~L~~~LlkLD~Id~~G~~~iR~~RK~~v~~iQ~~l~~LD~~~~ 94 (99)
T 1ugo_A 17 ISRLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNAS 94 (99)
T ss_dssp HHHHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999986688403999999999999999867845589799999999999999999999985143
No 109
>>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophilum, structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum} (A:)
Probab=31.37 E-value=29 Score=14.03 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999987555
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
.||.++.++.+++++++.++.+++.+....+.
T Consensus 217 ~~L~~~a~~i~~~i~~l~~~~~e~~~~~~~~e 248 (252)
T 3gaa_A 217 DLLEEQVKALDEQIKKIEEQYKELQEKQKEPQ 248 (252)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999999999999987499874223530
No 110
>>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae} (C:)
Probab=30.68 E-value=30 Score=13.95 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=18.7
Q ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0313677759999999999999999999999999999999
Q gi|254781130|r 324 YLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQD 363 (378)
Q Consensus 324 ~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~ 363 (378)
.-.++...|. -+.+++++...++.+|+.+|+++.+++..
T Consensus 52 ~davn~~ql~-~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 90 (162)
T 3emo_C 52 TDAINGSQLY-AVAKGVTNLAGQVNNLEGKVNKVGKRADA 90 (162)
T ss_dssp CCBCBHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 6526346777-88888887777664320211001224557
No 111
>>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis/exocytosis complex; 2.00A {Rattus norvegicus} (B:)
Probab=30.29 E-value=30 Score=13.90 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
+-+.++||.+...+|..+|.+|.+.+....+-
T Consensus 15 ie~~i~el~~if~~l~~lV~~Qge~id~Ie~n 46 (77)
T 1jth_B 15 LENSIRELHDMFMDMAMLVESQGEMIDRIEYN 46 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99989999999999999998362059999999
No 112
>>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus} (A:)
Probab=30.23 E-value=30 Score=13.89 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNEEHQDV 364 (378)
Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~~~~~l 364 (378)
.-|-||+++-|+|+.+|-.+..+.+.|
T Consensus 9 dlvSeL~~rsEdlEkri~~LE~kle~L 35 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987589999999999999999
No 113
>>1g5g_A Fusion protein; NDV, paramyxovirus, viral protein; HET: NAG BMA; 3.30A {Newcastle disease virus} (A:1-324)
Probab=29.99 E-value=30 Score=13.86 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999875554
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
|=++++.-.+-|.+|++-+.++.--+++|||.+|.-++
T Consensus 123 lK~si~~TNeAV~~l~~g~~~la~av~~lQd~IN~~l~ 160 (324)
T 1g5g_A 123 LKESIAATNEAVHEVTNGLSQLAVAVGKMQQFVNDQFN 160 (324)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88777665688998851188899998889998877764
No 114
>>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} (A:)
Probab=29.94 E-value=30 Score=13.86 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQD 366 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~ 366 (378)
|-.+.+++..++.++..+.++-++|=+
T Consensus 9 i~~lE~eL~~~r~~~~~q~~eyq~Ll~ 35 (59)
T 1gk6_A 9 VEELLSKNYHLENEVARLKKLVGDLLN 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 999987320167899999999999987
No 115
>>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton; NMR {Homo sapiens} (A:)
Probab=29.85 E-value=30 Score=13.85 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEH 361 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~ 361 (378)
+|...+|+-|+..+...+..+
T Consensus 65 ~es~~ki~~L~~~l~K~q~~l 85 (98)
T 2ke4_A 65 AETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 116
>>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} (A:)
Probab=29.85 E-value=30 Score=13.85 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254781130|r 341 QELLQEVKELRDMIDK 356 (378)
Q Consensus 341 qel~~~i~~l~~~i~~ 356 (378)
.||..+-++|+.+|++
T Consensus 28 eelkkkweelkkkiee 43 (67)
T 1lq7_A 28 EELKKKWEELKKKIEE 43 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999889999999998
No 117
>>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} (A:)
Probab=29.75 E-value=31 Score=13.83 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999
Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQNEEHQDV 364 (378)
Q Consensus 339 aiqel~~~i~~l~~~i~~~~~~~~~l 364 (378)
|.|-+.++|..+-..+..+.+-.+.|
T Consensus 64 A~kKIe~kVr~~~~~~vTk~e~ee~l 89 (110)
T 2oa5_A 64 AXRKIEAKVRSRAAKAVTEQELTSLL 89 (110)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999860014699999998
No 118
>>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A (A:)
Probab=29.72 E-value=31 Score=13.83 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=42.1
Q ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 603136777599999999999999999999999999999999999875554
Q gi|254781130|r 323 GYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 323 ~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
..+.-.....+.-|-+-+.++..++..|+.++..+.+++..++..+..+..
T Consensus 62 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 112 (117)
T 2zqm_A 62 LIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998650999999999999999999999999999999999999999999871
No 119
>>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus} (A:)
Probab=29.53 E-value=31 Score=13.81 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
+-||+++|+.|..+--+.+.+.+||-|-
T Consensus 5 ~eeLk~~ikKLnsrA~q~KMdLHDLaE~ 32 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 9999999999988999975057765344
No 120
>>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} (A:564-717)
Probab=27.69 E-value=33 Score=13.58 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDV 364 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l 364 (378)
+++..+++...+..++..|.......++|
T Consensus 80 ~l~~~~~l~~el~~~~~~~~~l~~~~~~L 108 (154)
T 1sjj_A 80 QLNHLRQYEKSIVNYKPKIDQLEGDHQQI 108 (154)
T ss_dssp HHHHHHHHHHHHHTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999
No 121
>>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} (A:)
Probab=27.68 E-value=33 Score=13.58 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
++.+.+||+++-+++--...|+..+++++
T Consensus 3 mkq~eDKiEE~lSK~YH~eNE~AR~kKLi 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67898999999999999888999999986
No 122
>>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} (A:24-128,A:168-278)
Probab=27.51 E-value=33 Score=13.56 Aligned_cols=49 Identities=12% Similarity=-0.147 Sum_probs=31.6
Q ss_pred HHHHHHHHHHE-ECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88876633441-06766031367775999999999999999999999999
Q gi|254781130|r 308 NNLKEINEVFV-DTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDK 356 (378)
Q Consensus 308 qev~~v~p~~v-~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~ 356 (378)
+|+++-+-.+. .+.++....++-+.+-+.++++++..++-.+|=.++.+
T Consensus 120 ~ei~~~~~~~~~~~~~d~~k~~fy~a~~~~l~aii~~a~rya~lA~~~Ae 169 (216)
T 1r9d_A 120 NEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIAD 169 (216)
T ss_dssp HHHHHHHHHTCCSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987346788356789999999999999999999999999999987
No 123
>>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} (T:)
Probab=27.46 E-value=33 Score=13.55 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999-------99999999999999998755
Q gi|254781130|r 336 LAKAIQELLQEVKELR-------DMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 336 li~aiqel~~~i~~l~-------~~i~~~~~~~~~l~~~~~~~ 371 (378)
|-+-+|||.++|..|+ .++..+.-+|.+|..+++-+
T Consensus 47 L~e~~keLh~kI~~leeEkYDle~kv~kq~yEI~eL~~rv~dl 89 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998359999999898899999999999
No 124
>>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, actin-binding, alternative splicing, cytoplasm; 2.10A {Homo sapiens} PDB: 3f57_A (A:)
Probab=27.21 E-value=34 Score=13.52 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999998755
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
.+..++++..+.+.|+.+|......+..|.+....+
T Consensus 138 ~~~~~~~~~~~~~~l~~el~~~~~~~~~l~~~~~~l 173 (218)
T 3edu_A 138 DASTAESFHRVHTAFERELHLLGVQVQQFQDVATRL 173 (218)
T ss_dssp --------CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 604789999999999999999898999999999999
No 125
>>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, protein structure initiative, PSI; 2.32A {Mus musculus} (A:)
Probab=26.85 E-value=34 Score=13.48 Aligned_cols=74 Identities=12% Similarity=0.020 Sum_probs=34.9
Q ss_pred EEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2557888766334410676603136777599999999999999999-----------99999999999999999987555
Q gi|254781130|r 304 GFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKE-----------LRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 304 G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~-----------l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
..--+|+++.+-++....+=-+.-+...+...|+..+-||.+.|.. ....-+++.+|+-|+--.+..+|
T Consensus 28 ~~~i~elq~~i~~~~~~~~w~~~~~~~~l~~~L~eE~gEL~eai~~~~~~~~~~~~~~~~~~e~L~eEL~DVl~~l~~la 107 (170)
T 2a3q_A 28 EPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALA 107 (170)
T ss_dssp CSCHHHHHHHHHHHHHTSCHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSSSCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88899999999999997494101799999999999999999999986010022210027889999999999999999999
Q ss_pred HHHCC
Q ss_conf 43116
Q gi|254781130|r 373 NSQKF 377 (378)
Q Consensus 373 ~~~~~ 377 (378)
+...|
T Consensus 108 ~~~gi 112 (170)
T 2a3q_A 108 ARCHV 112 (170)
T ss_dssp HHTTC
T ss_pred HHHCC
T ss_conf 99793
No 126
>>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} (A:)
Probab=26.73 E-value=34 Score=13.46 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999875554
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
+.+.++|+-.+++|+.++++|+.-|+.+..+-.
T Consensus 47 kh~eeeI~~H~~eIerhq~~I~RHK~ki~~L~~ 79 (84)
T 1gmj_A 47 KHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 720326677899999999999999999999860
No 127
>>3eqm_A Cytochrome P450 19A1; human aromatase, membrane protein, microsomal, estrogen, biosynthesis of steroid hormone, disease mutation, heme, iron; HET: HEM ASD; 2.90A {Homo sapiens} (A:114-132,A:207-308)
Probab=25.72 E-value=24 Score=14.61 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254781130|r 336 LAKAIQELLQEVKEL 350 (378)
Q Consensus 336 li~aiqel~~~i~~l 350 (378)
--+|+|||++.|+.|
T Consensus 57 hk~AaqeLqDaie~L 71 (121)
T 3eqm_A 57 YEKSVKDLKDAIEVL 71 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 128
>>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymerase assembly, transferase; 1.76A {Sulfolobus solfataricus P2} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D (D:1-35,D:154-168,D:224-265)
Probab=25.54 E-value=36 Score=13.31 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHH
Q ss_conf 03776642111452077898620725888535457785434023255788876633441067660313677759999999
Q gi|254781130|r 260 SDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKA 339 (378)
Q Consensus 260 SD~rlK~~i~~~~~~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~a 339 (378)
-|.|++--.+ ..+|++++.+|-.+.-|-. .++- . .-+| ..+-...+-..+-.-++.+.+ .|++|
T Consensus 9 ~~~~l~lv~e---~YPLEfVNsIRRAsmLYak--fipv-s---l~~i----~~~~~kyILeiESVGSLkPeR---ILiEA 72 (92)
T 2pa8_D 9 DDTRIDLVFE---GYPLEFVNAIRRASMLYAK--FIPV-S---LSVV----RYYPDKYILEIESVGSLKPER---ILLEA 72 (92)
T ss_dssp CSSEEEEEEE---SSCHHHHHHHHHHHHHSGG--GCCE-E---EEEE----EEEEEEEEEEEEECSSSCHHH---HHHHH
T ss_pred CCCEEEEEEE---CCCHHHHHHHHHHHHHCCC--CCCC-C---CEEE----ECCCCEEEEEEEECCCCCHHH---HHHHH
T ss_conf 7988999997---7781799999999997132--2666-5---2001----002378999999757629999---99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254781130|r 340 IQELLQEVKELRDMIDK 356 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~ 356 (378)
-|-+..|+++|++++-|
T Consensus 73 ~KSilrKieeL~kKlve 89 (92)
T 2pa8_D 73 GKSIIRKIEELEKKLVE 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 129
>>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, disease mutation, structural protein, ZU5, beta sandwich, spectrin binding; 2.75A {Homo sapiens} PDB: 3kbu_A (A:138-326)
Probab=25.33 E-value=36 Score=13.28 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
++++..+.+.|+..+......+..|.+..
T Consensus 114 ~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 142 (189)
T 3kbt_A 114 AESFHRVHTAFERDVHLLGVQVQQFQDVA 142 (189)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999799999999999
No 130
>>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} (A:)
Probab=24.97 E-value=25 Score=14.46 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887663344106766031367775999999999999999
Q gi|254781130|r 308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEV 347 (378)
Q Consensus 308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i 347 (378)
.+++.++|........-.-++-..+.-..|+=|++|.+++
T Consensus 22 ~~L~~llP~~~~~~~~~~k~~Ka~IL~~ai~yI~~Lq~~~ 61 (63)
T 1a0a_A 22 HELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp HHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999977661023688776659999999999999998761
No 131
>>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} (A:57-148)
Probab=24.62 E-value=37 Score=13.19 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=34.0
Q ss_pred EEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32557888766334410676603136777599999999999999999999999999999999999875
Q gi|254781130|r 303 IGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 303 ~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
.||-=.|+++.+.-.-.+.. ....+..+|.+=.+++.++|.+|+...+.+...+...+++...
T Consensus 16 lG~sL~eIk~~l~l~~~~~~-----~~~~~~~ll~~~~~~i~~ki~eL~~~~~~L~~~~~~~~~~~~~ 78 (92)
T 3gpv_A 16 TGXPIQKIKQFIDWSXEGDS-----TILHRLKLXKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 78 (92)
T ss_dssp TTCCHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHCCHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 60789999999999866767-----8999999999999999999999999999999999999998706
No 132
>>1de4_C Transferrin receptor, hemochromatosis protein; HFE, hereditary hemochromatosis, MHC class I; HET: NAG; 2.80A {Homo sapiens} (C:489-640)
Probab=24.17 E-value=33 Score=13.60 Aligned_cols=46 Identities=9% Similarity=-0.021 Sum_probs=23.8
Q ss_pred CCEEECHH---HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 60313677---75999999999999-----999999999999999999999998
Q gi|254781130|r 323 GYLAPNPS---VIIPHLAKAIQELL-----QEVKELRDMIDKQNEEHQDVQDMS 368 (378)
Q Consensus 323 ~~~~~~~~---~l~~~li~aiqel~-----~~i~~l~~~i~~~~~~~~~l~~~~ 368 (378)
-|+.|=|. ...|-+.+||..-+ +..+.++.+|......++..-+.+
T Consensus 88 ~~kHvifap~~~tFPgi~eai~~~~~~~a~~~~~~v~~qi~~v~~~i~~Aa~~L 141 (152)
T 1de4_C 88 PFRHVFWGSGSHTLPALLENLKLRKQNNGAFNETLFRNQLALATWTIQGAANAL 141 (152)
T ss_dssp CCCBTTTSCSTTSHHHHHHHHHHTSSCSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 764489879998876579999716455641449999999999999999999973
No 133
>>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, structural genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} (A:164-196,A:328-462)
Probab=24.17 E-value=38 Score=13.13 Aligned_cols=17 Identities=6% Similarity=-0.113 Sum_probs=6.4
Q ss_pred HHHHHHHHHCCCCCHHH
Q ss_conf 03776642111452077
Q gi|254781130|r 260 SDERLKKVHGESSASAR 276 (378)
Q Consensus 260 SD~rlK~~i~~~~~~~l 276 (378)
|++-|-.+.-..++.+|
T Consensus 18 ~~~~~~~~~~~~~~~~L 34 (168)
T 3ilw_A 18 DEEETLAAVMGRVKGPL 34 (168)
T ss_dssp CHHHHHHHHHHHCCSCH
T ss_pred CHHHHHHHHHCCCCCCH
T ss_conf 00356777750477999
No 134
>>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=24.06 E-value=38 Score=13.11 Aligned_cols=45 Identities=4% Similarity=0.036 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHH-H-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67775999999999-9-99-9999999999999999999999987555
Q gi|254781130|r 328 NPSVIIPHLAKAIQ-E-LL-QEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378)
Q Consensus 328 ~~~~l~~~li~aiq-e-l~-~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378)
.|..-+-+|+.++| | .. .+-+.+++++.+--+..+.|+++++...
T Consensus 40 ~Y~~aie~l~~~~~~e~~~~~~k~~i~~k~~~Yl~RAE~Lk~~l~~~~ 87 (117)
T 2cpt_A 40 LYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE 87 (117)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999700478899999999999999999999999998765
No 135
>>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} (A:)
Probab=23.98 E-value=38 Score=13.10 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=34.7
Q ss_pred EEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 32557888766334410676603136777599999999999999----99999999999999999999
Q gi|254781130|r 303 IGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQE----VKELRDMIDKQNEEHQDVQD 366 (378)
Q Consensus 303 ~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~----i~~l~~~i~~~~~~~~~l~~ 366 (378)
+--|.-+|.++.|....-.+......|-.|.-+|++-+=+|..- -.+++..=.++..++|.+.+
T Consensus 26 i~~i~~~v~~l~~~v~~f~~k~~~ke~~~L~E~L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~l~ 93 (99)
T 1m7k_A 26 IIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILE 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998758874089999999999999986683658979999999999999999999
No 136
>>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} (B:)
Probab=23.90 E-value=38 Score=13.09 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999-------999999999999999998755
Q gi|254781130|r 336 LAKAIQELLQEVKEL-------RDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 336 li~aiqel~~~i~~l-------~~~i~~~~~~~~~l~~~~~~~ 371 (378)
|-+-+|||.++|..| +.++..++-+|.+|..+++-+
T Consensus 47 L~e~~keLh~~I~~leeEkYDle~kv~kq~yEI~eL~~rv~dl 89 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999459999999888899999999999
No 137
>>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* (A:1-18,A:148-160,A:274-366)
Probab=23.57 E-value=39 Score=13.04 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999987555431
Q gi|254781130|r 358 NEEHQDVQDMSNTPLNSQ 375 (378)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~ 375 (378)
.+.+.|+++++-..+.+|
T Consensus 86 ~eR~~DfK~~l~~yLe~q 103 (124)
T 3dyt_A 86 SNRIYDYNSVIRLYLEQQ 103 (124)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 138
>>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parkinson disease, phosphoprotein, polymorphism, UBL conjugation; NMR {Homo sapiens} (A:)
Probab=23.09 E-value=39 Score=12.98 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999875554311
Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQK 376 (378)
Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~ 376 (378)
.--|-.+|-.|-++++||..+.-.||...-.++-.||
T Consensus 6 CMSLASQVVKLTKQL~EQt~~Rv~LQ~qLQ~lle~~k 42 (48)
T 2kes_A 6 CMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999999999999974356
No 139
>>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} (A:704-862)
Probab=23.00 E-value=40 Score=12.96 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=21.6
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13677759999999999999999999999
Q gi|254781130|r 326 APNPSVIIPHLAKAIQELLQEVKELRDMI 354 (378)
Q Consensus 326 ~~~~~~l~~~li~aiqel~~~i~~l~~~i 354 (378)
.||..+...-|-|.+..|..+++.++.++
T Consensus 92 ~vd~~~e~~kl~k~l~kl~~ei~~~~~~L 120 (159)
T 1gax_A 92 LLDVEEWRRRQEKRLKELLALAERSQRKL 120 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76899999999999999999999999876
No 140
>>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* (A:1-107)
Probab=22.72 E-value=40 Score=12.93 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=51.4
Q ss_pred EEEHHHHHHHHHHHEE----------------CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2557888766334410----------------676603136777599999999999999999999999999999999999
Q gi|254781130|r 304 GFSENNLKEINEVFVD----------------TIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378)
Q Consensus 304 G~iAqev~~v~p~~v~----------------~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378)
+||||-.---=|-+|+ ..=+++-+.==++-.++=++=|++..+|+.|++++.+-++.+.+.+..
T Consensus 7 ~f~~~g~~~RGPRivE~~qs~cke~~wP~CsDdDWg~KCPSGCRmqGLid~~dqd~~~RI~kl~~~L~~~q~~~k~s~~~ 86 (107)
T 3ghg_A 7 DFLAEGGGVRGPRVVERHQSACKDSDWPFCSDEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSL 86 (107)
T ss_dssp --------------------CCCCCCCCBCCSSSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50305887668766642022214667887767444566875002566799999999999999999999999999999999
Q ss_pred HHH
Q ss_conf 875
Q gi|254781130|r 368 SNT 370 (378)
Q Consensus 368 ~~~ 370 (378)
..-
T Consensus 87 t~~ 89 (107)
T 3ghg_A 87 TTN 89 (107)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 141
>>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, DNA-binding protein; 3.10A {Cauliflower mosaic virus} (A:)
Probab=22.44 E-value=41 Score=12.89 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=27.3
Q ss_pred EHHHHHHHHHHHEECCC---------CCEEECHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57888766334410676---------6031367775999999999999999999
Q gi|254781130|r 306 SENNLKEINEVFVDTIG---------GYLAPNPSVIIPHLAKAIQELLQEVKEL 350 (378)
Q Consensus 306 iAqev~~v~p~~v~~~~---------~~~~~~~~~l~~~li~aiqel~~~i~~l 350 (378)
|+-||.+++-+..+... +-....-+.|-.+..|-|++|.++|++.
T Consensus 7 I~~eI~el~~~ik~l~~~i~~Il~Kl~s~~~t~~~lEsiAAKIIkDisd~I~~C 60 (129)
T 3f6n_A 7 IQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDC 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999997427997203468999999999999998717
No 142
>>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} (A:366-563)
Probab=22.33 E-value=41 Score=12.87 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999998755
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378)
+++..+++.|+.+|.....++..|++....+
T Consensus 156 ~~~~~~~~~l~~el~~~~~~i~~l~~~~~~l 186 (198)
T 1sjj_A 156 QGLTTAHEQFKATLPDADKERQAILGIHNEV 186 (198)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8789999999999999999999999999999
No 143
>>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} (A:)
Probab=22.08 E-value=41 Score=12.84 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254781130|r 342 ELLQEVKELRDMIDKQNEEH 361 (378)
Q Consensus 342 el~~~i~~l~~~i~~~~~~~ 361 (378)
++.+.|..|+.++.+.+.++
T Consensus 30 ~~q~~i~~le~el~~lr~~~ 49 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 63626878999999999999
No 144
>>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} (A:)
Probab=22.08 E-value=41 Score=12.84 Aligned_cols=49 Identities=4% Similarity=-0.096 Sum_probs=31.6
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31367775999999999999999999----99999999999999999875554
Q gi|254781130|r 325 LAPNPSVIIPHLAKAIQELLQEVKEL----RDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 325 ~~~~~~~l~~~li~aiqel~~~i~~l----~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
--+...+...+++.|+++..+..+++ .+..++..++++.|+++++....
T Consensus 280 ~Dl~~gk~T~p~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 332 (335)
T 2h8o_A 280 KDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGEKAAILIAAARFIAE 332 (335)
T ss_dssp ------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 79876975499999999999999999999999877568468999999999986
No 145
>>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} (C:)
Probab=22.04 E-value=41 Score=12.83 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999
Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNEE 360 (378)
Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~~ 360 (378)
-|++|+||+.+....|++-++..--.
T Consensus 5 ~l~eal~~Qee~N~rlr~Y~D~ii~~ 30 (42)
T 2d7c_C 5 ELXEAIQKQEEINFRLQDYIDRIIVA 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998899999999999999999
No 146
>>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} (B:)
Probab=22.03 E-value=41 Score=12.83 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999
Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQNEEHQDVQD 366 (378)
Q Consensus 339 aiqel~~~i~~l~~~i~~~~~~~~~l~~ 366 (378)
.+|.|+.++..|+.+--..++++|.|..
T Consensus 2 evqalkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3789999999999851789998999987
No 147
>>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (Z:)
Probab=21.90 E-value=41 Score=12.81 Aligned_cols=10 Identities=10% Similarity=0.511 Sum_probs=3.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781130|r 333 IPHLAKAIQE 342 (378)
Q Consensus 333 ~~~li~aiqe 342 (378)
++-.-++++.
T Consensus 147 ~~~k~~~~r~ 156 (173)
T 3bbo_Z 147 VPRPPPSLKK 156 (173)
T ss_dssp ----------
T ss_pred CCCCCHHHHH
T ss_conf 2477454788
No 148
>>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:62-188)
Probab=21.53 E-value=42 Score=12.76 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=35.2
Q ss_pred HHHH-EECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3344-10676603136777599999999999999999999999999999999999875554
Q gi|254781130|r 314 NEVF-VDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 314 ~p~~-v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
+||+ ++-+.+.+.--.+.+=.+|.+.+..|.......+..-.+..++++++-+.++.++.
T Consensus 30 IPEL~~eip~~~~~G~iTTVEGlL~~~~~~L~~~~~~~~~~~~e~~~k~~~~i~~L~~~~~ 90 (127)
T 2qkd_A 30 IPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTRRAVEGAIAERIDEFIGKLKDLKQ 90 (127)
T ss_dssp EGGGTEEECTTSSCCEEEEHHHHHHHHHHHHHTTHHHHHHHCHHHHHHHHHHHHHHHHGGG
T ss_pred EEECCEECCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 5001247068777733872899999999998742365550398999999999999999864
No 149
>>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:101-134,D:194-248)
Probab=21.44 E-value=42 Score=12.74 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEE 360 (378)
Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~ 360 (378)
.+|||+|-++++ |+.+++++.++
T Consensus 39 AEAI~~lL~~iD-Le~e~~~Lr~e 61 (89)
T 1hqm_D 39 AEAIQELLKELD-LEKLERELLEE 61 (89)
T ss_dssp HHHHHHHHTHHH-HCHHHHHHHTT
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 999999986499-89999999998
No 150
>>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} (A:)
Probab=21.41 E-value=42 Score=12.74 Aligned_cols=27 Identities=7% Similarity=0.268 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQ 362 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~ 362 (378)
|-..+++|..++..|+.+++++.+++.
T Consensus 19 l~~~~~~L~~~i~~le~~~~~~~~~~k 45 (218)
T 3frt_A 19 IRKEMRVVDRQIRDIQREEEKVKRSVK 45 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 151
>>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, coiled coil, helix-turn helix, domain swapped, condensin, cell cycle; 2.90A {Escherichia coli} (A:118-287)
Probab=21.33 E-value=43 Score=12.73 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=44.0
Q ss_pred EEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 232557888766334410676603136777599999999999999999999999999999999999875554
Q gi|254781130|r 302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378)
Q Consensus 302 ~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378)
+.-..|+|+++....+-++.++..+- ..+.++|--.|-|+-..|+--+-.++||+++ +|+.+..|||
T Consensus 11 qLs~va~Ei~~Aa~aAe~~g~~~~Wr--~nV~apLkySVaeifd~Idl~QR~mDeQQ~~---Vk~~IA~LL~ 77 (170)
T 1t98_A 11 QLSIVAGELKRAADAAEEGGDEFHWH--RNVYAPLKYSVAEIFDSIDLTQRLXDEQQQQ---VKDDIAQLLN 77 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCHHHHH--HHTHHHHHHTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_conf 99999999999999988269879999--8758406340999973312688999999999---9999999999
No 152
>>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} (A:)
Probab=21.17 E-value=43 Score=12.71 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254781130|r 347 VKELRDMIDKQNEEHQDVQD 366 (378)
Q Consensus 347 i~~l~~~i~~~~~~~~~l~~ 366 (378)
|..|+.+|..+.+++..|.+
T Consensus 2 iaalekeiaalekeiaalek 21 (26)
T 1u0i_A 2 IAALEKEIAALEKEIAALEK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 17899999999999999986
No 153
>>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B (B:)
Probab=20.98 E-value=43 Score=12.68 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEH 361 (378)
Q Consensus 341 qel~~~i~~l~~~i~~~~~~~ 361 (378)
+||.+...+|..+|.+|.+.+
T Consensus 31 ~~l~~l~~~l~~~V~~Q~e~i 51 (109)
T 3hd7_B 31 RELHDMFMDMAMLVESQGEMI 51 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999802699
No 154
>>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} (A:68-130)
Probab=20.94 E-value=43 Score=12.67 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHCCEEEEECCCCCC---------CCCCCEEEEEEHHHHHHHHHHHEEC
Q ss_conf 78986207258885354577---------8543402325578887663344106
Q gi|254781130|r 276 REIIEQLKFIDFNYLPESGM---------DSELRYLIGFSENNLKEINEVFVDT 320 (378)
Q Consensus 276 l~~i~~l~~~~~~~~~~~~~---------~~~~~~~~G~iAqev~~v~p~~v~~ 320 (378)
-+.+.+|+|-..++.++.+. .+....-.|.+||-+.+++.|+++.
T Consensus 8 A~~~~kl~pg~VKv~eEa~vV~V~~rikVsE~GVEGsGp~A~ri~~ly~eyi~~ 61 (63)
T 1m5q_A 8 AKQAEKIFPGXVKYIEETNVVLIGDKVRVSEIGVEGVGPVAERAKRLFEEFLKR 61 (63)
T ss_dssp HHHHHHHSTTCEEEETTTTEEEETTTEEEETTEEECCSHHHHHHHHHHHHHC--
T ss_pred HHHHHHCCCHHHHHHHHHCEEEEEECEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 998744380266665531358732032787762206672788899999999975
No 155
>>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} (B:)
Probab=20.70 E-value=44 Score=12.64 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999875
Q gi|254781130|r 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378)
Q Consensus 334 ~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378)
--|-+.++||.+...+|...|.+|.+.+.....-+..
T Consensus 9 ~~ie~~i~el~~lf~~l~~lV~~Q~e~id~Ie~nv~~ 45 (71)
T 2nps_B 9 QQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVES 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999989999999999999999864899999999999
No 156
>>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A (A:169-262)
Probab=20.46 E-value=29 Score=14.02 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=29.5
Q ss_pred EEEEEEHHHHHHHHHHHEEC--CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02325578887663344106--766031367775999999999999999999999999999999999
Q gi|254781130|r 301 YLIGFSENNLKEINEVFVDT--IGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ 365 (378)
Q Consensus 301 ~~~G~iAqev~~v~p~~v~~--~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~ 365 (378)
+|+|.|+..+++--|+.... +-....+.+.++...|.+.-++.+++.++=.+.-++-.+....||
T Consensus 2 tQfG~li~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~Y~~a~~~~~~d~~~~~~ar~~~~~le 68 (94)
T 2zue_A 2 IQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLE 68 (94)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 7999999999998776530121000100232125667888998889987313025677899887651
No 157
>>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle state; HET: BOG RET; 2.20A {Natronomonas pharaonis} (B:)
Probab=20.44 E-value=25 Score=14.54 Aligned_cols=27 Identities=11% Similarity=0.399 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQNEEHQDVQ 365 (378)
Q Consensus 339 aiqel~~~i~~l~~~i~~~~~~~~~l~ 365 (378)
.++++.+++++..+++++..++.++++
T Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~e~~ 153 (163)
T 2f95_B 127 SVRTSLEDAKNAREDAEQAQKRAEEIN 153 (163)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999998
No 158
>>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} (E:)
Probab=20.31 E-value=44 Score=12.58 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQD 366 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~ 366 (378)
|-.+.+.+.++++.|+.+++.++..++.+++
T Consensus 66 l~~~~~~~~ee~~~l~~~~e~~k~~i~~~~~ 96 (100)
T 1go4_E 66 TSVARQRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3899999886489999999999999999971
No 159
>>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* (B:1-117)
Probab=20.17 E-value=45 Score=12.56 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=24.9
Q ss_pred EEEHHHHHHHHHHHE-----ECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 255788876633441-----0676603136777599999999999999999999999999
Q gi|254781130|r 304 GFSENNLKEINEVFV-----DTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQN 358 (378)
Q Consensus 304 G~iAqev~~v~p~~v-----~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~ 358 (378)
-.--|++++..|++- +..=|.+-+.--.|---|+|-=+-+.-+|++|+..|+++.
T Consensus 49 ~~~q~k~e~~~pDaGGClh~de~lGvLcPTgceL~~tLLkQernvr~~I~~Lk~~V~~~s 108 (117)
T 3ghg_B 49 AATQKKVERKAPDAGGCLHADPDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVS 108 (117)
T ss_dssp ---------CCCCCCCCBCSSTTTCBCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 777777888898978753436545677997115899999999889999999999999999
No 160
>>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* (A:183-206,A:342-476)
Probab=20.07 E-value=45 Score=12.54 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999
Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQ 365 (378)
Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~ 365 (378)
|.+..+||.++|+.|++-+.........++
T Consensus 118 l~~E~~~L~~~I~~L~~iL~~~~~~~~iI~ 147 (159)
T 2nov_A 118 LQEEEAELREKIAMLAAIIGDERTMYNLMK 147 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999999999999999789999999999
Done!