Query gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 378 No_of_seqs 114 out of 123 Neff 7.6 Searched_HMMs 13730 Date Wed Jun 1 11:46:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781130.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1nkpa_ a.38.1.1 (A:) Myc prot 92.1 0.4 2.9E-05 25.3 8.1 60 308-371 26-85 (88) 2 d1nkpb_ a.38.1.1 (B:) Max prot 91.0 0.51 3.7E-05 24.5 7.5 60 308-372 22-81 (83) 3 d1am9a_ a.38.1.1 (A:) SREBP-1a 86.2 1 7.4E-05 22.1 7.1 53 309-367 27-79 (80) 4 d1nlwa_ a.38.1.1 (A:) Mad prot 83.5 1.3 9.6E-05 21.3 7.0 43 327-369 36-78 (79) 5 d1uklc_ a.38.1.1 (C:) SREBP-2 79.5 1.8 0.00013 20.3 6.2 49 308-362 9-57 (61) 6 d2azeb1 e.63.1.2 (B:201-301) T 77.0 2.1 0.00015 19.8 5.5 35 340-374 3-37 (101) 7 d1q08a_ a.6.1.3 (A:) Transcrip 75.2 2.3 0.00017 19.4 5.2 60 301-372 13-73 (94) 8 d2jf2a1 b.81.1.1 (A:1-262) UDP 73.5 1.5 0.00011 20.9 3.4 31 346-376 228-258 (262) 9 d2p90a1 c.56.8.1 (A:6-274) Hyp 71.8 2.1 0.00015 19.8 3.8 68 303-372 175-258 (269) 10 d1fxka_ a.2.5.1 (A:) Prefoldin 71.6 2.8 0.0002 18.8 8.4 47 325-371 59-105 (107) 11 d1t98a2 a.47.6.1 (A:119-281) C 71.5 2.5 0.00018 19.2 4.2 68 301-373 9-76 (163) 12 d1m7ka_ a.7.7.1 (A:) Silencer 71.1 1.5 0.00011 20.8 3.0 39 334-372 2-45 (81) 13 d1fxkc_ a.2.5.1 (C:) Prefoldin 67.0 3.4 0.00025 18.2 7.5 103 261-373 24-130 (133) 14 d1r8ea1 a.6.1.3 (A:3-120) Tran 66.8 3.4 0.00025 18.1 6.1 57 302-369 59-115 (118) 15 d1seta1 a.2.7.1 (A:1-110) Sery 65.1 3.7 0.00027 17.9 5.8 31 334-364 67-97 (110) 16 d2bdea1 c.108.1.23 (A:2-459) C 61.8 3.3 0.00024 18.2 3.2 34 341-374 370-403 (458) 17 d1j2za_ b.81.1.1 (A:) UDP N-ac 61.1 2 0.00014 20.0 2.0 44 333-376 206-252 (259) 18 d1ykhb1 a.252.1.1 (B:2-130) RN 59.5 4.5 0.00033 17.2 6.1 37 337-373 90-126 (129) 19 d1kida_ c.8.5.1 (A:) GroEL, A 58.4 4.7 0.00034 17.0 4.4 33 341-373 157-191 (193) 20 d1uk5a_ a.7.7.1 (A:) BAG-famil 58.0 4.8 0.00035 17.0 4.4 18 328-345 57-74 (111) 21 d2e50a1 d.305.1.1 (A:1-222) Pr 56.3 5.1 0.00037 16.8 7.6 41 336-376 31-71 (222) 22 d1ugoa_ a.7.7.1 (A:) BAG-famil 54.0 4.5 0.00033 17.2 2.8 40 306-345 23-62 (99) 23 d2oc5a1 a.25.1.6 (A:20-241) Hy 52.2 5.9 0.00043 16.3 4.9 43 328-370 14-56 (222) 24 d1sjpa2 c.8.5.1 (A:189-372) Gr 50.2 6.3 0.00046 16.1 4.4 32 341-372 149-182 (184) 25 d1twfc1 d.74.3.1 (C:3-41,C:173 49.5 4.5 0.00033 17.2 2.2 25 335-359 110-134 (135) 26 d1ydxa1 d.287.1.2 (A:1-193) Bi 48.6 6.6 0.00048 15.9 4.3 24 340-363 153-176 (193) 27 d1zkea1 a.30.6.1 (A:1-79) Hypo 45.5 7.3 0.00053 15.6 3.1 24 340-363 52-75 (79) 28 d1u5pa2 a.7.1.1 (A:1772-1872) 43.9 7.7 0.00056 15.4 6.3 38 338-375 31-68 (101) 29 d1q06a_ a.6.1.3 (A:) Transcrip 38.3 9.2 0.00067 14.8 5.4 58 302-371 55-112 (127) 30 d1cuna2 a.7.1.1 (A:116-219) Sp 35.5 10 0.00074 14.5 6.3 26 336-361 35-60 (104) 31 d1hcia4 a.7.1.1 (A:633-746) al 35.1 10 0.00075 14.5 5.4 34 333-366 39-72 (114) 32 d1slqa_ f.47.1.1 (A:) VP4 memb 34.3 11 0.00077 14.4 3.6 22 341-362 240-261 (270) 33 d1s35a2 a.7.1.1 (A:1169-1273) 32.5 11 0.00082 14.2 6.4 34 339-372 34-67 (105) 34 d1i5na_ a.24.10.3 (A:) Chemota 30.9 12 0.00087 14.0 3.9 69 302-374 58-126 (128) 35 d1wu9a1 a.245.1.1 (A:191-249) 30.3 12 0.00088 13.9 4.0 23 339-361 2-24 (59) 36 d1bjta_ e.11.1.1 (A:) DNA topo 30.1 12 0.00089 13.9 2.2 20 339-358 710-729 (760) 37 d1o3xa_ a.7.8.1 (A:) ADP-ribos 29.4 13 0.00091 13.8 5.9 29 324-352 49-77 (112) 38 d2c0sa1 a.30.7.1 (A:1-57) Hypo 27.4 14 0.00098 13.5 2.9 14 362-375 36-49 (57) 39 d1u5pa1 a.7.1.1 (A:1662-1771) 27.2 14 0.00099 13.5 6.2 32 340-371 37-68 (110) 40 d2clyb1 f.53.1.1 (B:4-123) ATP 27.0 14 0.001 13.5 3.8 29 337-365 91-119 (120) 41 d1quua1 a.7.1.1 (A:1-124) alph 26.9 14 0.001 13.5 6.4 23 337-359 54-76 (124) 42 d1s35a1 a.7.1.1 (A:1063-1168) 25.8 14 0.001 13.3 6.0 24 336-359 37-60 (106) 43 d1ydxa2 d.287.1.2 (A:194-374) 25.8 14 0.001 13.3 6.0 35 338-372 139-173 (181) 44 d1io1a_ e.32.1.1 (A:) Phase 1 25.8 14 0.001 13.3 6.2 22 337-358 353-374 (395) 45 d1quua2 a.7.1.1 (A:125-248) al 25.4 15 0.0011 13.3 3.8 40 325-365 33-72 (124) 46 d1b4fa_ a.60.1.2 (A:) EphB2 re 24.7 15 0.0011 13.2 2.2 27 325-351 47-73 (74) 47 d2oa5a1 d.362.1.1 (A:7-102) Un 24.1 15 0.0011 13.1 2.7 22 338-359 57-78 (96) 48 d1vp7a_ a.7.13.1 (A:) Exonucle 23.3 16 0.0012 13.0 5.6 46 321-372 23-68 (68) 49 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 23.3 15 0.0011 13.2 1.4 40 308-347 22-61 (63) 50 d1x4ta1 a.2.15.1 (A:7-86) Pre- 23.3 16 0.0012 13.0 2.3 35 339-374 27-61 (80) 51 d1yf2a1 d.287.1.2 (A:1-220) Bi 22.4 16 0.0012 12.9 6.1 32 341-372 172-203 (220) 52 d1ux5a_ a.207.1.1 (A:) Bni1 {B 22.1 17 0.0012 12.8 5.2 36 330-365 329-364 (411) 53 d1sd4a_ a.4.5.39 (A:) Penicill 21.8 14 0.001 13.5 1.0 47 304-358 73-120 (122) 54 d1de4c1 a.48.2.1 (C:609-756) T 21.2 17 0.0013 12.7 1.5 31 332-362 100-135 (148) 55 d1xppa_ d.74.3.2 (A:) DNA-dire 20.8 18 0.0013 12.7 4.6 32 332-363 66-97 (99) No 1 >d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Probab=92.09 E-value=0.4 Score=25.28 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=44.9 Q ss_pred HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8887663344106766031367775999999999999999999999999999999999998755 Q gi|254781130|r 308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378) Q Consensus 308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378) .++..++|..... ..++-..+.-..++=|+.|.++++.|+.+++++.++.+.|+..++.| T Consensus 26 ~~Lr~llP~~~~~----~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88) T d1nkpa_ 26 FALRDQIPELENN----EKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88) T ss_dssp HHHHTTCGGGTTC----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999867998787----76679999999999999999999999999999999999999999975 No 2 >d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Probab=91.01 E-value=0.51 Score=24.48 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=47.0 Q ss_pred HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88876633441067660313677759999999999999999999999999999999999987555 Q gi|254781130|r 308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378) Q Consensus 308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378) .++..++|..-. ...+-..+.-..++=|++|.+++..|+++++++.++...|+..+..+. T Consensus 22 ~~L~~llP~~~~-----~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 81 (83) T d1nkpb_ 22 HSLRDSVPSLQG-----EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83) T ss_dssp HHHHTTSGGGTT-----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS T ss_pred HHHHHHHCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999997577789-----988899999999999999999999999999999999999999998727 No 3 >d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Probab=86.17 E-value=1 Score=22.15 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=37.3 Q ss_pred HHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88766334410676603136777599999999999999999999999999999999999 Q gi|254781130|r 309 NLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 (378) Q Consensus 309 ev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~ 367 (378) ++..++|.. ..-.+-..+.-..|.-|++|.++++.|++++..++++++.++.+ T Consensus 27 ~L~~llP~~------~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~L 79 (80) T d1am9a_ 27 ELKDLVVGT------EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (80) T ss_dssp HHHHHHTCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 998327777------77788999999999999999999999999999999999986766 No 4 >d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Probab=83.51 E-value=1.3 Score=21.30 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=36.2 Q ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3677759999999999999999999999999999999999987 Q gi|254781130|r 327 PNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378) Q Consensus 327 ~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378) .+...+.-..|+=|++|..+++.|+.+++.+..+++.|+..+. T Consensus 36 ~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79) T d1nlwa_ 36 HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79) T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8899999999999999999999999999999999999998764 No 5 >d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Probab=79.50 E-value=1.8 Score=20.30 Aligned_cols=49 Identities=18% Similarity=0.013 Sum_probs=32.0 Q ss_pred HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8887663344106766031367775999999999999999999999999999999 Q gi|254781130|r 308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQ 362 (378) Q Consensus 308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~ 362 (378) ++++.++|..- .-.+-..+.--.|+=|+.|..+++.|+++...+.++.+ T Consensus 9 ~~L~~lvP~~~------~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61) T d1uklc_ 9 IELKDLVMGTD------AKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57 (61) T ss_dssp HHHHHHHSCSS------CCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99996689998------76669999999999999999999999999999999997 No 6 >d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Probab=77.03 E-value=2.1 Score=19.79 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999998755543 Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378) Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378) +|.|+++++.|+.+-.++++.++.+++.+.-+... T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted 37 (101) T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 37 (101) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 67999999999999999999999999999996526 No 7 >d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]} Probab=75.16 E-value=2.3 Score=19.43 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=37.2 Q ss_pred EEEEEEHHHHHHHHHHHEECCC-CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0232557888766334410676-60313677759999999999999999999999999999999999987555 Q gi|254781130|r 301 YLIGFSENNLKEINEVFVDTIG-GYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378) Q Consensus 301 ~~~G~iAqev~~v~p~~v~~~~-~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378) ++.||-=.|+++++.-..+... .. .. ++ +-+.+++++++++|.++++-...|+++....+ T Consensus 13 r~lGFsL~EI~~ll~l~~~~~~~~c-----~~-----v~--~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~c~ 73 (94) T d1q08a_ 13 RQLGFSLESIRELLSIRIDPEHHTC-----QE-----SK--GIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (94) T ss_dssp HHTTCCHHHHHHHHHHHHCGGGCBH-----HH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred HHCCCCHHHHHHHHHHCCCCCCCCH-----HH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9979989999999985338886769-----99-----99--99999999999999999999999999997377 No 8 >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Probab=73.51 E-value=1.5 Score=20.90 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999875554311 Q gi|254781130|r 346 EVKELRDMIDKQNEEHQDVQDMSNTPLNSQK 376 (378) Q Consensus 346 ~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~ 376 (378) ..+++.++|+++.+...++|+++.-+..|+| T Consensus 228 ~l~~~~~~l~~~~~~~~~v~~~i~Fi~~s~r 258 (262) T d2jf2a1 228 TLDEVKPEIAELAETYPEVKAFTDFFARSTR 258 (262) T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHCCS T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC T ss_conf 7999999998650288999999999974889 No 9 >d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]} Probab=71.82 E-value=2.1 Score=19.83 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=42.4 Q ss_pred EEEEHHHHHHHHHHHE----ECCCCCE--EECHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3255788876633441----0676603--136777599999999----------99999999999999999999999999 Q gi|254781130|r 303 IGFSENNLKEINEVFV----DTIGGYL--APNPSVIIPHLAKAI----------QELLQEVKELRDMIDKQNEEHQDVQD 366 (378) Q Consensus 303 ~G~iAqev~~v~p~~v----~~~~~~~--~~~~~~l~~~li~ai----------qel~~~i~~l~~~i~~~~~~~~~l~~ 366 (378) .|++++++.+--...+ ..+ .|. ..|+.. ...|++++ .+|.++.++.+++|+++.++.++|++ T Consensus 175 ~g~l~~~~~~~gi~~i~l~a~vp-~y~~~~pdP~A-A~~lL~~l~~~~gl~id~~~L~e~Ae~~e~~i~~l~e~~~e~~~ 252 (269) T d2p90a1 175 SLMLEKLLKDKGKNVSGYTVHVP-HYVSASPYPAA-TLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQR 252 (269) T ss_dssp HHHHHHHHHHTTCCEEEEEEEEE-GGGTTSCCHHH-HHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH T ss_pred HHHHHHHHHHCCCCEEEEEEECC-CCCCCCCCHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH T ss_conf 99999999965998179999767-52368998799-99999999998789999088999999999999999862879999 Q ss_pred HHHHHH Q ss_conf 987555 Q gi|254781130|r 367 MSNTPL 372 (378) Q Consensus 367 ~~~~~~ 372 (378) ++..|- T Consensus 253 ~v~~LE 258 (269) T d2p90a1 253 VVGALE 258 (269) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 10 >d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=71.62 E-value=2.8 Score=18.84 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=32.3 Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31367775999999999999999999999999999999999998755 Q gi|254781130|r 325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378) Q Consensus 325 ~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378) .-.+...+.|-|-+-+..+..+|+.|++.+..+.++..++++-.... T Consensus 59 v~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~ 105 (107) T d1fxka_ 59 IRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107) T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 30739999999999999999999999999999999999999999997 No 11 >d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=71.52 E-value=2.5 Score=19.18 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=50.4 Q ss_pred EEEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0232557888766334410676603136777599999999999999999999999999999999999875554 Q gi|254781130|r 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378) Q Consensus 301 ~~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378) .+.+..|+|+++....+-+..+++.+- ..+.++|--.|-|+-..|+--+-.++||+++ +|+.+..||| T Consensus 9 iqls~va~el~~a~~aA~~~~de~~Wr--~~V~apLkySVaeifd~Idl~QR~mDeQQ~~---Vk~eIA~LL~ 76 (163) T d1t98a2 9 MQLSIVAGELKRAADAAEEGGDEFHWH--RNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQ---VKDDIAQLLN 76 (163) T ss_dssp HHHHHHHHHHHHHHHHHHTCCCHHHHH--HHTHHHHHHTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHEEHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH T ss_conf 999999999999999998569878898--7511344221999984650888867878999---9999999997 No 12 >d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]} Probab=71.05 E-value=1.5 Score=20.78 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999-----9999999999987555 Q gi|254781130|r 334 PHLAKAIQELLQEVKELRDMIDK-----QNEEHQDVQDMSNTPL 372 (378) Q Consensus 334 ~~li~aiqel~~~i~~l~~~i~~-----~~~~~~~l~~~~~~~~ 372 (378) |+-+++|++..+++.+|+.+|+. ..++...|-+|+-++| T Consensus 2 ~p~~~~I~~i~~~v~~l~~~V~~f~g~~~dke~~~L~E~L~~~l 45 (81) T d1m7ka_ 2 PPSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKEL 45 (81) T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 76889999999999999999998738753189999999999999 No 13 >d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=67.04 E-value=3.4 Score=18.16 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=63.2 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEE---EEHHHHHHHHHHHEECCCC-CEEECHHHHHHHH Q ss_conf 37766421114520778986207258885354577854340232---5578887663344106766-0313677759999 Q gi|254781130|r 261 DERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIG---FSENNLKEINEVFVDTIGG-YLAPNPSVIIPHL 336 (378) Q Consensus 261 D~rlK~~i~~~~~~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~G---~iAqev~~v~p~~v~~~~~-~~~~~~~~l~~~l 336 (378) -++++..+.+.. .+.+.|+.|.-. . ..+....+| |+--++...-.-+|.-..| |...+...-+.++ T Consensus 24 i~~l~~~~~e~~-~~~~~L~~l~~~-----~----~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~eA~~~l 93 (133) T d1fxkc_ 24 MEAVRATISELE-ILEKTLSDIQGK-----D----GSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESI 93 (133) T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTTC-----T----TCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHH T ss_pred HHHHHHHHHHHH-HHHHHHHHHHCC-----C----CCEEEEECCCCEEEEEEECCCCCEEEEECCCEEEEECHHHHHHHH T ss_conf 999999999999-999999976227-----8----970799747853888786389864888359823550599999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999875554 Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378) Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378) -+-+++|...++.|++++...++.++.++..+..++- T Consensus 94 ~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~ 130 (133) T d1fxkc_ 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999987 No 14 >d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]} Probab=66.76 E-value=3.4 Score=18.12 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=30.9 Q ss_pred EEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23255788876633441067660313677759999999999999999999999999999999999987 Q gi|254781130|r 302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSN 369 (378) Q Consensus 302 ~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~ 369 (378) ..||-=+|+++++. .+...+...+-+..+++.++++.|+...+.+....+.|++.+. T Consensus 59 ~~g~sl~eIk~~l~-----------~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~~e 115 (118) T d1r8ea1 59 YIGTPLEEMKKAQD-----------LEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQME 115 (118) T ss_dssp HTTCCHHHHHHHTT-----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HCCCCHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 96999999999981-----------6889999999999999999999999999999999999988863 No 15 >d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Probab=65.08 E-value=3.7 Score=17.89 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999 Q gi|254781130|r 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQDV 364 (378) Q Consensus 334 ~~li~aiqel~~~i~~l~~~i~~~~~~~~~l 364 (378) ..|++.+++|.++|++|++++.+..++++.+ T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110) T d1seta1 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (110) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999988889999999999999999999999 No 16 >d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]} Probab=61.82 E-value=3.3 Score=18.23 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=26.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999998755543 Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378) Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378) |+..+++++|+.++++.+++++++.+.+..+-|. T Consensus 370 ~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~fn~ 403 (458) T d2bdea1 370 QQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNP 403 (458) T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 4204899999999999999999999999877161 No 17 >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Probab=61.11 E-value=2 Score=19.95 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC Q ss_conf 99999999999999999999999999999---999999875554311 Q gi|254781130|r 333 IPHLAKAIQELLQEVKELRDMIDKQNEEH---QDVQDMSNTPLNSQK 376 (378) Q Consensus 333 ~~~li~aiqel~~~i~~l~~~i~~~~~~~---~~l~~~~~~~~~~~~ 376 (378) ++.|.+++++|..+.+.|++.++++.++. .++|++.+-+-.|+| T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~s~r 252 (259) T d1j2za_ 206 IDFIYALYKRLFRPIPSLRESAKLELEEHANNPFVKEICSFILESSR 252 (259) T ss_dssp HHHHHHHHHHHTCSSSCHHHHHHHHHHHTSSCHHHHHHHHHHHHCSS T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC T ss_conf 99999999999845877999999998764699999999999970899 No 18 >d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=59.47 E-value=4.5 Score=17.18 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999875554 Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN 373 (378) Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~ 373 (378) .+-|+||.++.++...+..+.-++.+.|-+++..++. T Consensus 90 ~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~ 126 (129) T d1ykhb1 90 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 126 (129) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999 No 19 >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Probab=58.35 E-value=4.7 Score=17.04 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH Q ss_conf 99999999999999999--9999999999875554 Q gi|254781130|r 341 QELLQEVKELRDMIDKQ--NEEHQDVQDMSNTPLN 373 (378) Q Consensus 341 qel~~~i~~l~~~i~~~--~~~~~~l~~~~~~~~~ 373 (378) .++.++|+.|+.+++.. ..+.+.|++|+.+|.. T Consensus 157 ~~I~~Ri~~Lk~~l~~~~~~~~~e~L~eRlakLsG 191 (193) T d1kida_ 157 AAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAG 191 (193) T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC T ss_conf 99999999999999986899999999999998747 No 20 >d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]} Probab=57.99 E-value=4.8 Score=17.00 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=9.1 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 677759999999999999 Q gi|254781130|r 328 NPSVIIPHLAKAIQELLQ 345 (378) Q Consensus 328 ~~~~l~~~li~aiqel~~ 345 (378) .|-.|.-+|.+-+=+|+. T Consensus 57 ey~~L~E~L~~~LlkLD~ 74 (111) T d1uk5a_ 57 KYLMIEEYLTKELLALDS 74 (111) T ss_dssp HHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999998667 No 21 >d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Probab=56.30 E-value=5.1 Score=16.80 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999999999999999875554311 Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQK 376 (378) Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~ 376 (378) .|+++++++.+++.|+.+..+...+++.=-+....|+-.+| T Consensus 31 ~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R 71 (222) T d2e50a1 31 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKR 71 (222) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999866699998 No 22 >d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]} Probab=54.03 E-value=4.5 Score=17.22 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=17.4 Q ss_pred EHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHH Q ss_conf 5788876633441067660313677759999999999999 Q gi|254781130|r 306 SENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQ 345 (378) Q Consensus 306 iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~ 345 (378) |..||.++-|+...-.+-.....|-.|.-.|.+-+=+|+. T Consensus 23 i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~~~LlkLD~ 62 (99) T d1ugoa_ 23 IQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDS 62 (99) T ss_dssp HHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999982766429999999999999998667 No 23 >d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Probab=52.16 E-value=5.9 Score=16.33 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=20.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6777599999999999999999999999999999999999875 Q gi|254781130|r 328 NPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370 (378) Q Consensus 328 ~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~ 370 (378) .|+++-...|+.=||..+-.-.|-++|-++++|...|-+|-++ T Consensus 14 AYSRINaIVIEGEqeA~~Nyi~la~llP~~~dEL~rLakME~r 56 (222) T d2oc5a1 14 AYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMR 56 (222) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH T ss_pred HHHHHHEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 9987401557350878886999998782218999999999988 No 24 >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Probab=50.16 E-value=6.3 Score=16.11 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH Q ss_conf 99999999999999999--999999999987555 Q gi|254781130|r 341 QELLQEVKELRDMIDKQ--NEEHQDVQDMSNTPL 372 (378) Q Consensus 341 qel~~~i~~l~~~i~~~--~~~~~~l~~~~~~~~ 372 (378) .+..++|++|+.+++.. ..+.+.||+|..+|. T Consensus 149 ~~I~~Ri~~Lk~~l~~~~~~~e~~~L~eRLAkLs 182 (184) T d1sjpa2 149 DAIAGRVAQIRQEIENSDSDYDREKLQERLAKLA 182 (184) T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 9999999999999997589989999999999863 No 25 >d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=49.53 E-value=4.5 Score=17.21 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999 Q gi|254781130|r 335 HLAKAIQELLQEVKELRDMIDKQNE 359 (378) Q Consensus 335 ~li~aiqel~~~i~~l~~~i~~~~~ 359 (378) ++.+||+.|+.|.+.|..++++..+ T Consensus 110 Iv~~ai~iL~~Kl~~l~~~L~~~dq 134 (135) T d1twfc1 110 VVVRGIDTLQKKVASILLALTQMDQ 134 (135) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999988753 No 26 >d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]} Probab=48.57 E-value=6.6 Score=15.94 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQD 363 (378) Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~ 363 (378) ++.+.++|+.++++++.+++..+. T Consensus 153 l~~ld~~i~~~~~~i~~l~~~~~~ 176 (193) T d1ydxa1 153 LSVFDERLENLASLIEINRKLRDE 176 (193) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999 No 27 >d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]} Probab=45.53 E-value=7.3 Score=15.60 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQD 363 (378) Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~ 363 (378) .|.++++|+.||+.|+.+++-..+ T Consensus 52 l~qid~ev~kLK~~IdaLNKiKke 75 (79) T d1zkea1 52 FTQLSEEVERLKELINALNKIKKG 75 (79) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998899999999999999999888 No 28 >d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Probab=43.91 E-value=7.7 Score=15.43 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999987555431 Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ 375 (378) Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~ 375 (378) .+++.|..+-+.++..|......+..|.++-..++-+. T Consensus 31 ~~~~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~~ 68 (101) T d1u5pa2 31 TGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDN 68 (101) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999981889999999999997709 No 29 >d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]} Probab=38.35 E-value=9.2 Score=14.82 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=29.1 Q ss_pred EEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2325578887663344106766031367775999999999999999999999999999999999998755 Q gi|254781130|r 302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378) Q Consensus 302 ~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378) ..||-=.|+++++.-.-..... +....+-+.+++++|+++|.+++...+.|.++.... T Consensus 55 ~~G~sl~eI~~~l~~~~~~~~~------------~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~l~~~~ 112 (127) T d1q06a_ 55 QVGFNLEESGELVNLFNDPQRH------------SADVKRRTLEKVAEIERHIEELQSMRDQLLALANAC 112 (127) T ss_dssp HTTCCHHHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HCCCCHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8699999999999725168874------------799999999999999999999999999999999858 No 30 >d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Probab=35.49 E-value=10 Score=14.50 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999 Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNEEH 361 (378) Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~~~ 361 (378) |++.-+++..+|+..+.+++.+.+.- T Consensus 35 ll~~h~~~~~ei~~~~~~~~~l~~~g 60 (104) T d1cuna2 35 LLKKHEAFETDFTVHKDRVNDVCANG 60 (104) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998189999999999 No 31 >d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Probab=35.14 E-value=10 Score=14.46 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999 Q gi|254781130|r 333 IPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQD 366 (378) Q Consensus 333 ~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~ 366 (378) +..+++..|.+..+|...+.+|+...+.-++|.+ T Consensus 39 ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~ 72 (114) T d1hcia4 39 LEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQE 72 (114) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999879999999999999877 No 32 >d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus rotavirus [TaxId: 10969]} Probab=34.26 E-value=11 Score=14.36 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQ 362 (378) Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~ 362 (378) |.|..++.+|+++++++.+|+. T Consensus 240 qDLErqi~dLr~efN~ls~eia 261 (270) T d1slqa_ 240 QDLERQLGELREEFNALSQEIA 261 (270) T ss_dssp HHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 8799999999999999999878 No 33 >d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Probab=32.48 E-value=11 Score=14.16 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999987555 Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378) Q Consensus 339 aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378) .++.|..+-+.|+..|....+.+..|.++-..+. T Consensus 34 ~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~ 67 (105) T d1s35a2 34 AAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLV 67 (105) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998799999999986999998999999984 No 34 >d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]} Probab=30.94 E-value=12 Score=13.98 Aligned_cols=69 Identities=4% Similarity=0.039 Sum_probs=40.6 Q ss_pred EEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2325578887663344106766031367775999999999999999999999999999999999998755543 Q gi|254781130|r 302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378) Q Consensus 302 ~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378) .++-+|++++.++..+-+. ...++ ..++.+|.+++..|...++.++..-.......+.|.+....+..+ T Consensus 58 ~i~~lah~lE~~l~~lr~~---~~~~~-~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~l~~~L~~l~~e 126 (128) T d1i5na_ 58 ILQETTHLMENLLDEARRG---EMQLN-TDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQLALE 126 (128) T ss_dssp HHHHHHHHHHHHHHHHHTT---SSCCC-HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHC---CCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 9999999999999999838---98989-999999999999999999998748999954599999999987626 No 35 >d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Probab=30.30 E-value=12 Score=13.90 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQNEEH 361 (378) Q Consensus 339 aiqel~~~i~~l~~~i~~~~~~~ 361 (378) -+.||.+++.+|+..|+.+.++. T Consensus 2 e~~~L~~ei~elk~~v~~lEkER 24 (59) T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKER 24 (59) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88899999999999999999999 No 36 >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=30.09 E-value=12 Score=13.88 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999 Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQN 358 (378) Q Consensus 339 aiqel~~~i~~l~~~i~~~~ 358 (378) .++||.+++++|+++++++. T Consensus 710 ei~kL~~E~~~l~~Ei~~L~ 729 (760) T d1bjta_ 710 RYQKLLKQKQEKETELENLL 729 (760) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999997 No 37 >d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.38 E-value=13 Score=13.79 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=14.1 Q ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 03136777599999999999999999999 Q gi|254781130|r 324 YLAPNPSVIIPHLAKAIQELLQEVKELRD 352 (378) Q Consensus 324 ~~~~~~~~l~~~li~aiqel~~~i~~l~~ 352 (378) ...++-..++--|...++.++.+|..|-+ T Consensus 49 ~~~~~~~ell~eL~~~c~~~qp~i~~li~ 77 (112) T d1o3xa_ 49 AAAGSSEDLMKELYQRCERMRPTLFRLAS 77 (112) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88602679999999999999999999986 No 38 >d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Probab=27.40 E-value=14 Score=13.54 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999987555431 Q gi|254781130|r 362 QDVQDMSNTPLNSQ 375 (378) Q Consensus 362 ~~l~~~~~~~~~~~ 375 (378) |+|+.++|+..+.+ T Consensus 36 QELD~LIN~~m~~k 49 (57) T d2c0sa1 36 QELDRLLNLLIELK 49 (57) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999884 No 39 >d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Probab=27.24 E-value=14 Score=13.53 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999998755 Q gi|254781130|r 340 IQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371 (378) Q Consensus 340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~ 371 (378) ++.+..+-+.++.+|+.....+..|.+.-..+ T Consensus 37 ~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~L 68 (110) T d1u5pa1 37 VNNLLKKHQLLEADISAHEDRLKDLNSQADSL 68 (110) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999998067999999999998 No 40 >d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]} Probab=27.04 E-value=14 Score=13.50 Aligned_cols=29 Identities=7% Similarity=0.190 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999 Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNEEHQDVQ 365 (378) Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~ 365 (378) -+++++..+-+++.+.+|.+++++++.|+ T Consensus 91 ~e~~~~~~~~~~~s~~rI~~lekeLe~ik 119 (120) T d2clyb1 91 KEDVKSCAEFLTQSKTRIQEYEKELEKMR 119 (120) T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999999999999851 No 41 >d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Probab=26.93 E-value=14 Score=13.49 Aligned_cols=23 Identities=4% Similarity=0.173 Sum_probs=7.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQNE 359 (378) Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~~ 359 (378) ++..+++...|...+.+|+...+ T Consensus 54 ~~~h~~~~~~i~~~~~~v~~l~~ 76 (124) T d1quua1 54 LRKHEAFESDLAAHQDRVEQIAA 76 (124) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999971899999999 No 42 >d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Probab=25.83 E-value=14 Score=13.35 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q gi|254781130|r 336 LAKAIQELLQEVKELRDMIDKQNE 359 (378) Q Consensus 336 li~aiqel~~~i~~l~~~i~~~~~ 359 (378) +++..+++..+|+..+..++...+ T Consensus 37 ~l~~h~~l~~ei~~~~~~~~~~~~ 60 (106) T d1s35a1 37 LLQQHAGIKDEIDGHQDSYQRVKE 60 (106) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999888878999999999 No 43 >d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]} Probab=25.82 E-value=14 Score=13.34 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=19.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999987555 Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378) Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378) +.-++..+.++.+.++|++++++++.|+++-..++ T Consensus 139 ~eQ~~I~~~l~~~d~~i~~~~~~i~~l~~lk~~Ll 173 (181) T d1ydxa2 139 QLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLL 173 (181) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999 No 44 >d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]} Probab=25.78 E-value=14 Score=13.34 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254781130|r 337 AKAIQELLQEVKELRDMIDKQN 358 (378) Q Consensus 337 i~aiqel~~~i~~l~~~i~~~~ 358 (378) |+.|-+..++|...+.+|--.+ T Consensus 353 l~~iD~Ai~~v~~~Ra~lGA~q 374 (395) T d1io1a_ 353 LQKIDAALAQVDTLRSDLAAVQ 374 (395) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999998755698 No 45 >d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Probab=25.38 E-value=15 Score=13.29 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=17.6 Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31367775999999999999999999999999999999999 Q gi|254781130|r 325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ 365 (378) Q Consensus 325 ~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~ 365 (378) ++-+... +-.|++--+++..+|...+.+|+...+..+.|. T Consensus 33 ~g~dl~~-v~~ll~kh~~fe~el~~~~~~v~~l~~~~~~L~ 72 (124) T d1quua2 33 IVHSIEE-IQSLITAHEQFKATLPEADGERQSIMAIQNEVE 72 (124) T ss_dssp CCCSTTT-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6889999-999999999999989999879999999999999 No 46 >d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]} Probab=24.74 E-value=15 Score=13.20 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=15.8 Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 313677759999999999999999999 Q gi|254781130|r 325 LAPNPSVIIPHLAKAIQELLQEVKELR 351 (378) Q Consensus 325 ~~~~~~~l~~~li~aiqel~~~i~~l~ 351 (378) ++|.--.-.--++++|++|.++++++| T Consensus 47 lGI~~~ghr~ril~~i~~Lr~~~~~~~ 73 (74) T d1b4fa_ 47 VGVTLAGHQKKILNSIQVMRAQMNQIQ 73 (74) T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 399974599999999999999998733 No 47 >d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]} Probab=24.13 E-value=15 Score=13.12 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=8.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254781130|r 338 KAIQELLQEVKELRDMIDKQNE 359 (378) Q Consensus 338 ~aiqel~~~i~~l~~~i~~~~~ 359 (378) .|.|-+.++|..+-..+..+.+ T Consensus 57 ~A~kKIe~kV~~~~~~~vTk~e 78 (96) T d2oa5a1 57 VAMRKIEAKVRSRAAKAVTEQE 78 (96) T ss_dssp HHHHHHHHHHHHHHTTCCBHHH T ss_pred HHHHHHHHHHHHHHCCCCCHHH T ss_conf 9999999999988500135999 No 48 >d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]} Probab=23.34 E-value=16 Score=13.01 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=35.4 Q ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7660313677759999999999999999999999999999999999987555 Q gi|254781130|r 321 IGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378) Q Consensus 321 ~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378) ..|-+.++- .++..++-...++..++++++-.++++.|.+..++|+ T Consensus 23 E~g~l~Lee------sl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~~kPl 68 (68) T d1vp7a_ 23 ENGTLPLEQ------SLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL 68 (68) T ss_dssp HTTCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 679998999------9999999999999999999999999999972566899 No 49 >d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=23.28 E-value=15 Score=13.16 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=21.4 Q ss_pred HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHH Q ss_conf 8887663344106766031367775999999999999999 Q gi|254781130|r 308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEV 347 (378) Q Consensus 308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i 347 (378) ++++.++|......+.-..++-..+.-..|+=|++|++++ T Consensus 22 ~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v 61 (63) T d1a0aa_ 22 HELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63) T ss_dssp HHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999887885344677643109999999999999999761 No 50 >d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]} Probab=23.28 E-value=16 Score=13.00 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999998755543 Q gi|254781130|r 339 AIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS 374 (378) Q Consensus 339 aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~ 374 (378) -++|.+.+|.++++.--- ..++.+|-|.+|+|+-+ T Consensus 27 iikEI~~kvs~Iqn~~L~-e~~IRdLNDeINkL~re 61 (80) T d1x4ta1 27 IIGEISKKVAQIQNAGLG-EFRIRDLNDEINKLLRE 61 (80) T ss_dssp HHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHH T ss_conf 999999999985089987-79999989999999999 No 51 >d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]} Probab=22.41 E-value=16 Score=12.88 Aligned_cols=32 Identities=3% Similarity=0.194 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999987555 Q gi|254781130|r 341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTPL 372 (378) Q Consensus 341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~ 372 (378) ++..+.++.+.+.++.++++++.|+++-..++ T Consensus 172 ~~I~~~l~~i~~~i~~~~~~i~~L~~~r~~ll 203 (220) T d1yf2a1 172 KQIAKILTKIDEGIEIIEKSINKLERIKKGLM 203 (220) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999 No 52 >d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=22.13 E-value=17 Score=12.84 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=17.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 775999999999999999999999999999999999 Q gi|254781130|r 330 SVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ 365 (378) Q Consensus 330 ~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~ 365 (378) +++...+.+-+++...+++.|++...+..+..+++- T Consensus 329 d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~ 364 (411) T d1ux5a_ 329 DKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLM 364 (411) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 169999999999999999999999999999999999 No 53 >d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]} Probab=21.83 E-value=14 Score=13.46 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=26.0 Q ss_pred EEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Q ss_conf 2557888766334410676603136777599999999999-999999999999999 Q gi|254781130|r 304 GFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQEL-LQEVKELRDMIDKQN 358 (378) Q Consensus 304 G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel-~~~i~~l~~~i~~~~ 358 (378) -++++++++++..+.. -+...++..|++. ++| .+++++|++.|+++. T Consensus 73 ~~~~~~~~~~~~~~~~-------gs~~~lv~~~~~~-~~ls~~el~eL~~~l~~~~ 120 (122) T d1sd4a_ 73 DIKMKTAKTFLNKLYG-------GDMKSLVLNFAKN-EELNNKEIEELRDILNDIS 120 (122) T ss_dssp HHHHHHHHHHHHHHHT-------TCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHC-------CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH T ss_conf 9999999999999969-------9999999999857-8999999999999999874 No 54 >d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=21.19 E-value=17 Score=12.71 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH Q ss_conf 5999999999999-----999999999999999999 Q gi|254781130|r 332 IIPHLAKAIQELL-----QEVKELRDMIDKQNEEHQ 362 (378) Q Consensus 332 l~~~li~aiqel~-----~~i~~l~~~i~~~~~~~~ 362 (378) -.|-+..||.... +..+.++++|.-...-++ T Consensus 100 ~fPgi~dai~~~~~~~~~~~~~~v~~qls~~t~~i~ 135 (148) T d1de4c1 100 TLPALLENLKLRKQNNGAFNETLFRNQLALATWTIQ 135 (148) T ss_dssp SHHHHHHHHHHTSSCSSCCCHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 886399999753045643459999999999999999 No 55 >d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]} Probab=20.82 E-value=18 Score=12.65 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 59999999999999999999999999999999 Q gi|254781130|r 332 IIPHLAKAIQELLQEVKELRDMIDKQNEEHQD 363 (378) Q Consensus 332 l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~ 363 (378) ..-.|.+|+++|.++++.|++.++++-++.+. T Consensus 66 p~~~l~~a~~~li~~~~~l~~~~~~~~~~~~~ 97 (99) T d1xppa_ 66 PQSAIKRAVRKLSKLYEDLGTQFQKEFQRYES 97 (99) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999999999999999999998763 Done!