RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781130|ref|YP_003065543.1| hypothetical protein
CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
(378 letters)
>gnl|CDD|38865 KOG3661, KOG3661, KOG3661, Uncharacterized conserved protein
[Function unknown].
Length = 1019
Score = 40.5 bits (94), Expect = 9e-04
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 260 SDERLKK-VHGESSASAREIIEQLKFIDFNYLPE----SGMDSELRYLIGFSENNLKEIN 314
SD RLK+ + + A E + +L+ +D+ Y PE G++ R G LK +
Sbjct: 485 SDIRLKEHITEVDTTEALENLSKLRLVDYRYKPEVAASWGLEETQRPRTGVIAQELKAVL 544
Query: 315 EVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEE 360
V G YL N + A QEL + +L ID++ E
Sbjct: 545 PDAVKDTGDYLTVNEERVFYETVGATQELCRLTGDLDTKIDEKVAE 590
>gnl|CDD|37578 KOG2367, KOG2367, KOG2367, Alpha-isopropylmalate
synthase/homocitrate synthase [Amino acid transport and
metabolism].
Length = 560
Score = 31.9 bits (72), Expect = 0.31
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 253 VGCSYFLSDERLKKVHGESSASAREIIE---QLKFIDFNYLPESGMDSELRYLIGFSENN 309
+ S + +LKK E SA E+I+ L D + PE SEL +L+
Sbjct: 154 IATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRSELEFLL----EI 209
Query: 310 LKEINEVFVDTIG 322
L + + V T+
Sbjct: 210 LGAVIKAGVTTVN 222
>gnl|CDD|144619 pfam01093, Clusterin, Clusterin.
Length = 460
Score = 29.7 bits (67), Expect = 1.2
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 21/60 (35%)
Query: 306 SENNLKEINEV---FVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQ 362
S+N LK+++E +VD + ++ L VK+++ ++++ EEH+
Sbjct: 25 SKNELKQLSEEGEKYVD------------------EEVENALIGVKQMKTLMERTEEEHK 66
>gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the
GT1 family of glycosyltransferases. wcfI in Bacteroides
fragilis has been shown to be involved in the capsular
polysaccharide biosynthesis..
Length = 365
Score = 29.1 bits (66), Expect = 2.1
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 303 IGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDM 353
+ F + +I + GYLA LA+ I+ LL + E ++
Sbjct: 292 VAFDVGGIPDI---VDHGVTGYLAKPGDP--EDLAEGIEWLLADPDEREEL 337
>gnl|CDD|34223 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 29.0 bits (64), Expect = 2.2
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 260 SDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVD 319
E+ ++ E RE +++++ + + P L + + +E + VD
Sbjct: 203 DAEKAQEELKEIEKLLREALQEVRALVRDLRPVELEGLGLVEALRALLADFEERTGITVD 262
Query: 320 -TIGGYLAPNPSVIIPHLAKAIQELL 344
++G L P L + +QE L
Sbjct: 263 LSLGSELERLPPEAEDALFRIVQEAL 288
>gnl|CDD|39772 KOG4572, KOG4572, KOG4572, Predicted DNA-binding transcription
factor, interacts with stathmin [Transcription, General
function prediction only, Signal transduction
mechanisms].
Length = 1424
Score = 29.0 bits (64), Expect = 2.4
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 12/115 (10%)
Query: 262 ERLKKVHGESSASAREIIE----QLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVF 317
+ L+ + E EII+ +L +F L ES +++ E + EI
Sbjct: 1016 KELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEI---- 1071
Query: 318 VDTIGGYLAPNPSVIIPH--LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370
G I ++ L E+++L D I NE Q N+
Sbjct: 1072 --KDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENS 1124
>gnl|CDD|144389 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 28.9 bits (66), Expect = 2.5
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 329 PSVIIPHLAKAIQ----ELL--QEVKELRDMIDKQN 358
+VI HL++ ++ ELL QEV++L D ++K+
Sbjct: 455 ATVIATHLSEVLRRHAAELLGRQEVQKLLDRLEKEY 490
>gnl|CDD|36109 KOG0891, KOG0891, KOG0891, DNA-dependent protein kinase
[Replication, recombination and repair].
Length = 2341
Score = 28.4 bits (63), Expect = 3.0
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 273 ASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVI 332
I L ++ + + LR L + I E+ IG + NP+ +
Sbjct: 541 TDPDIRIRVLSSLNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYV 600
Query: 333 IPHLAKAIQELLQEVK 348
+P L K + ELL E++
Sbjct: 601 LPSLRKTLLELLTELE 616
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 28.3 bits (64), Expect = 3.5
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 183 YNNSQRIAAFLDDGDIMCYKRQKTVWQGIEI-------AQHTANIALESTKNCLYKTTVL 235
YN +R+ L+ + + Y ++ EI TA +A + + VL
Sbjct: 6 YNEEKRLPPTLE--EAVEYL-EERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVL 62
Query: 236 ----NMGRG 240
N G+G
Sbjct: 63 TLPKNRGKG 71
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 27.6 bits (61), Expect = 6.5
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 309 NLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMS 368
N K++N + I G L P P P L + I M+ K+ E+ V+ +
Sbjct: 203 NAKDMNSLVYRIIEGKLPPMPKDYSPELGELIAT----------MLSKRPEKRPSVKSIL 252
Query: 369 NTP 371
P
Sbjct: 253 RQP 255
>gnl|CDD|35737 KOG0517, KOG0517, KOG0517, Beta-spectrin [Cytoskeleton].
Length = 2473
Score = 27.3 bits (60), Expect = 7.3
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ 375
LA+A ++LL++ LR+ ID E++Q ++ + T + Q
Sbjct: 1089 LAEA-EQLLKQHAALREEIDGYQEDYQRMRALGETVADGQ 1127
>gnl|CDD|146980 pfam04599, Pox_G5, Poxvirus G5 protein. This protein has been
predicted to be related to the FEN-1 endonuclease.
Length = 426
Score = 27.3 bits (61), Expect = 7.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 307 ENNLKEINEVFVDTIGGYLA 326
+N K INE+FVDT+ +++
Sbjct: 20 DNIEKNINEIFVDTMSIFMS 39
>gnl|CDD|39842 KOG4643, KOG4643, KOG4643, Uncharacterized coiled-coil protein
[Function unknown].
Length = 1195
Score = 27.0 bits (59), Expect = 8.8
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 273 ASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVI 332
A E+ EQ K D Y S EL L+G NL+E N + I S
Sbjct: 509 ALKNELKEQYKTCDIQYELLSNKLEELEELLG----NLEEENAHLLKQI--QSLKTTSQN 562
Query: 333 IPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQKF 377
L + +L EL+ ID N + + + +N Q F
Sbjct: 563 GALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLF 607
>gnl|CDD|112906 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 27.1 bits (60), Expect = 8.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 333 IPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ 365
+ L K + LL E++EL D + E ++Q
Sbjct: 72 LDELKKEEERLLDELEELEKEDDDLDGELVELQ 104
>gnl|CDD|146199 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.
Length = 234
Score = 26.9 bits (60), Expect = 9.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 171 LHQAIFQNGAQFY 183
LH A GAQFY
Sbjct: 176 LHSAGSPGGAQFY 188
>gnl|CDD|37873 KOG2662, KOG2662, KOG2662, Magnesium transporters: CorA family
[Inorganic ion transport and metabolism].
Length = 414
Score = 26.8 bits (59), Expect = 9.8
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
L K + EL V+++RD +++ ++ D+ +M
Sbjct: 225 LKKRLTELTSRVQKVRDELEELLDDDDDMAEM 256
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,436,003
Number of extensions: 229947
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 25
Length of query: 378
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,210,882
Effective search space: 1191679606
Effective search space used: 1191679606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)