RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781130|ref|YP_003065543.1| hypothetical protein
CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
(378 letters)
>gnl|CDD|162408 TIGR01538, portal_SPP1, phage portal protein, SPP1 family. This
model represents one of several distantly related
families of phage portal protein. This protein forms a
hole, or portal, that enables DNA passage during
packaging and ejection. It also forms the junction
between the phage head (capsid) and the tail proteins.
It functions as a dodecamer of a single polypeptide of
average mol. wt. of 40-90 KDa.
Length = 412
Score = 31.7 bits (72), Expect = 0.28
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 317 FVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSN 369
VD GYL NP V K + + L E+ D D NE V+D+SN
Sbjct: 59 IVDQKTGYLVGNP-VKFTSDDKTLLDYLNELANQNDFHDILNEL---VKDLSN 107
>gnl|CDD|128345 smart00030, CLb, CLUSTERIN Beta chain.
Length = 206
Score = 31.7 bits (72), Expect = 0.30
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 21/61 (34%)
Query: 305 FSENNLKEINEV---FVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEH 361
S+N L+E++ +++ K I+ L+ VK+++ +I+K N+E
Sbjct: 4 VSDNELQEMSTQGSKYIN------------------KEIKNALKGVKQIKTLIEKTNKER 45
Query: 362 Q 362
+
Sbjct: 46 K 46
>gnl|CDD|184739 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 31.9 bits (73), Expect = 0.32
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 303 IGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDK 356
+G EN ++I E ++G L+ I LA I +L + +EL D ++
Sbjct: 204 LGLPENKARKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLET 257
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 29.7 bits (68), Expect = 1.1
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDV 364
L I E+ + + EL+ + EEH D
Sbjct: 123 LRDEIDEIAELLLELQKALLDLAEEHADT 151
>gnl|CDD|180350 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 29.7 bits (68), Expect = 1.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 328 NPSVIIPHLAKAIQ----ELL--QEVKELRDMIDKQN 358
+V+ HL + I+ ELL QEV++L D + K+
Sbjct: 484 PSTVVATHLTEVIKNHAAELLGRQEVQQLLDRLAKEY 520
>gnl|CDD|131765 TIGR02718, sider_RhtX_FptX, siderophore transporter, RhtX/FptX
family. RhtX from Sinorhizobium meliloti 2011 and FptX
from Pseudomonas aeruginosa appear to be single
polypeptide transporters, from the major facilitator
family (see pfam07690) for import of siderophores as a
means to import iron. This function was suggested by
proximity to siderophore biosynthesis genes and then
confirmed by study of knockout and heterologous
expression phenotypes.
Length = 390
Score = 29.5 bits (66), Expect = 1.6
Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 34/155 (21%)
Query: 32 KDLALDNNSPRPISAGGTAADNAVQ-ARVNLGTDDASNLTKGKIIANLLPFYPIQQGGGI 90
+D+A D + + A NAVQ A V +G F+ GGG
Sbjct: 114 QDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG------------------FF----GGGA 151
Query: 91 GQLDNKIYLGWNGTQLLLQ-VDLSSM--------REVWTSQLAPRALQNLVDHAHKPNHI 141
G L G LL+ V L+S+ R V + + +L +P
Sbjct: 152 GTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAW 211
Query: 142 VYTTDSNQYAATPLSSF-MRKLFSCHNGETLHQAI 175
+ A T +S F + KL+ G L + I
Sbjct: 212 SLLALALLSAMTAVSGFGLSKLYLVDAGWPL-EWI 245
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 29.2 bits (65), Expect = 1.7
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 245 HFDTDKGA---VGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRY 301
H+DT K ++ L++ + GES I LK I+ Y P G
Sbjct: 391 HYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTI---LKLIERLYDPTEGD------ 441
Query: 302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEH 361
+I +NLK+IN + + G ++ +P + + I+ L +K+L + + NE+
Sbjct: 442 IIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDG 501
Query: 362 QDVQDMSNT 370
D Q+ N
Sbjct: 502 NDSQENKNK 510
>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 29.1 bits (66), Expect = 1.9
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 326 APNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP 371
P + + K + EL E+KEL++++ ++ ++ + P
Sbjct: 118 EPKAAAESKVVQKELDELRDELKELKNLL---EDQLSGLRQVERIP 160
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 28.6 bits (64), Expect = 2.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 321 IGGYLAPNPSVII---------PHLAKAIQELLQEVKELRDM 353
I G LA NPSVII P + + +L+++VK ++
Sbjct: 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional.
Length = 238
Score = 28.2 bits (63), Expect = 3.4
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 66 ASNLTKGKII---ANLLPFYPIQQGGGIGQLDNKIYLGWNGTQLLLQVDLSSMREV-WTS 121
A +TK K++ LL Y + GG GQ N +YL N L ++ M ++ W +
Sbjct: 50 AEMITKLKVLQDSFKLLVTYRTKLQGGYGQFTNDLYL--NLLSDLANINGIDMIDIEWQA 107
Query: 122 QLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLF 163
+ Q L+ H + N V + N + +TP ++ +F
Sbjct: 108 DIDIEKHQRLITHLQQYNKEVVISHHN-FESTPPLDELKFIF 148
>gnl|CDD|178182 PLN02569, PLN02569, threonine synthase.
Length = 484
Score = 28.2 bits (63), Expect = 3.8
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 35 ALDNNSPRPISAGGTAADNAVQARVNLGTDDASNLTKGKIIANLLPFYPIQQGGGIGQLD 94
A+ ++ P SA AD ++ G + K + PF G LD
Sbjct: 7 AVISDPPPIKSATKFTADENIRDEARRGPPAPPDEFSAKYV----PFLECPLTGEKYSLD 62
Query: 95 NKIYLGWNGTQLLLQVDLSSMR----EVWTSQLAPR 126
+Y +G L ++ D+ +++ + W + R
Sbjct: 63 EVVYRSKSGGLLDVRHDMEALKRYDGKYWRALFDSR 98
>gnl|CDD|171347 PRK11923, algU, RNA polymerase sigma factor AlgU; Provisional.
Length = 193
Score = 27.8 bits (62), Expect = 4.6
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 14/128 (10%)
Query: 220 IALESTKNCLYKTTVLNMGRGPGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREII 279
IA+ + KN L ++ GR P D+D + ++ D LK + A R+ I
Sbjct: 78 IAINTAKNHL-----VSRGRRPP----DSDVSSEDAEFYDGDHALKDIESPERALLRDEI 128
Query: 280 EQLKFIDFNYLPES-GMDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAK 338
E LPE LR G S ++ + + V T+ + I K
Sbjct: 129 EGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAI----DK 184
Query: 339 AIQELLQE 346
A+Q LLQE
Sbjct: 185 ALQPLLQE 192
>gnl|CDD|181752 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 27.8 bits (63), Expect = 5.0
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 336 LAKAIQELLQEVKELRDMI 354
+A+ +Q++LQ KEL+D+I
Sbjct: 359 VAREVQQILQRYKELQDII 377
>gnl|CDD|184806 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 27.6 bits (62), Expect = 5.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQD 363
P + +Q LL+ + ELR + H D
Sbjct: 9 PSDQEELQRLLEALDELRARLAAAEAAHAD 38
>gnl|CDD|181525 PRK08655, PRK08655, prephenate dehydrogenase; Provisional.
Length = 437
Score = 27.3 bits (61), Expect = 6.4
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 309 NLKEIN-------EVFVDTIGGYLAPNPS------VIIPHLAKAIQELLQEVKELRDMID 355
++KE E+ +D IG L NP + P + + + ++E +EL +++
Sbjct: 194 DIKESRKFASPIYELMIDIIGRILGQNPYLYASIQMNNPQIPEIHETFIKECEELSELVK 253
Query: 356 KQNEE 360
+ E
Sbjct: 254 NGDRE 258
>gnl|CDD|185544 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 640
Score = 26.9 bits (60), Expect = 8.5
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 24/91 (26%)
Query: 128 LQNLVDHAHKPNH--IVYT--------TDSNQYAATPLSSFMRKLFSCHNG-----ETLH 172
L+ + +HK + I +T TD N A P + +++ HNG L
Sbjct: 84 LKEKLLDSHKNSTIGIAHTRWATHGGKTDEN---AHPHCDYKKRIALVHNGTIENYVELK 140
Query: 173 QAIFQNGAQFYNNS------QRIAAFLDDGD 197
+ G +F + + I LD G+
Sbjct: 141 SELIAKGIKFRSETDSEVIANLIGLELDQGE 171
>gnl|CDD|183887 PRK13194, PRK13194, pyrrolidone-carboxylate peptidase; Provisional.
Length = 208
Score = 26.8 bits (59), Expect = 8.6
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 23/121 (19%)
Query: 179 GAQFYNNSQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMG 238
G N + I LD I K + + ++ A LE + + +N+G
Sbjct: 12 GGDKKNPTMDIVKALDGKKI---GDAKVFGRVLPVSFKRAREELEKVLDEIKPDITINLG 68
Query: 239 RGPGYIHFDTDKGAVGCSYFLSDERLKKVHGE----------------SSASAREIIEQL 282
PG H ++ AV D R+ GE ++ REI+E+L
Sbjct: 69 LAPGRTHISVERVAVN----AIDARIPDNDGEKPEDEPIVEGAPAAYFATLPTREIVEEL 124
Query: 283 K 283
K
Sbjct: 125 K 125
>gnl|CDD|149916 pfam09002, DUF1887, Domain of unknown function (DUF1887). This
domain is found in a set of hypothetical bacterial
proteins.
Length = 379
Score = 27.1 bits (60), Expect = 8.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 122 QLAPRALQNLVDHAHKPNHIVYTTDSNQ 149
Q P + L+D +P H V+ Q
Sbjct: 11 QDPPNLITPLLDKRVRPEHAVFIGTEGQ 38
>gnl|CDD|129282 TIGR00178, monomer_idh, isocitrate dehydrogenase, NADP-dependent,
monomeric type. The monomeric type of isocitrate
dehydrogenase has been found so far in a small number of
species, including Azotobacter vinelandii,
Corynebacterium glutamicum, Rhodomicrobium vannielii,
and Neisseria meningitidis. It is NADP-specific.
Length = 741
Score = 26.8 bits (59), Expect = 8.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 327 PNPSVIIPHLAKAIQELLQEVKELRDMIDK-QNEEHQDVQDMSNTPLNS 374
PN S +P L AI+EL + +L D + + + +D++ S
Sbjct: 84 PNISASVPQLKAAIKELQDQGYDLPDYPAEPKTDTEKDIKARYAKIKGS 132
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,096,617
Number of extensions: 386988
Number of successful extensions: 1007
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1006
Number of HSP's successfully gapped: 28
Length of query: 378
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 283
Effective length of database: 3,941,713
Effective search space: 1115504779
Effective search space used: 1115504779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.4 bits)