RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781130|ref|YP_003065543.1| hypothetical protein
CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
(378 letters)
>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone;
HET: PEG; 2.20A {Bacillus phage ga-1} (A:)
Length = 129
Score = 43.5 bits (102), Expect = 4e-05
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 32/128 (25%)
Query: 260 SDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSEL-RYLIGFSENNLKEINEVFV 318
SDER K S + E++KF + + E RY G + ++ E
Sbjct: 1 SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEG 60
Query: 319 DTIGGY-------------------------------LAPNPSVIIPHLAKAIQELLQEV 347
+ Y + P+ ++ L+ +
Sbjct: 61 LSAFDYGLVGYDEWEATEDEYDSEGNLVEKGREAGNIYSIRPTECQWLEMACMRRKLERL 120
Query: 348 KELRDMID 355
Sbjct: 121 SLEHHHHH 128
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase,
hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
(A:109-200,A:241-275)
Length = 127
Score = 41.9 bits (98), Expect = 1e-04
Identities = 7/92 (7%), Positives = 24/92 (26%), Gaps = 4/92 (4%)
Query: 252 AVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPE-SGMDSELRYLIGFSENNL 310
++ K + + + +I + +L ++ R G +
Sbjct: 6 LGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQI 65
Query: 311 KEINEVFVDTIGGYLAPNPSVIIPHLAKAIQE 342
+++ +V+ +E
Sbjct: 66 RDVFIAHGLMDENSTNCRYAVLCY---DKYEE 94
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.03A {Methanocaldococcus jannaschii
DSM2661} (A:)
Length = 192
Score = 29.0 bits (65), Expect = 1.1
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 277 EIIEQLK----FIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGY-------- 324
+I+ LK F+ E S + + + ++ D GG
Sbjct: 104 GLIKLLKDKFAVSSFDRKEEPPNVSTXEWGTKIACEKFGGVPDIIYDR-GGEGKEPXIRV 162
Query: 325 LAPNPSVIIPHLAKAIQELLQEVKELR 351
L + + K ++ + + L
Sbjct: 163 LGRDA----IEVVKKVEVIQKIYNTLE 185
>2zz8_A LIPL32 protein; outer-membrane protein, unknown function;
2.01A {Leptospira interrogans} PDB: 3frl_A* (A:)
Length = 241
Score = 28.2 bits (62), Expect = 1.8
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQE 346
Y I F+ E+ FV ++G P + P + +EL ++
Sbjct: 190 YRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQ 235
>3idu_A Uncharacterized protein; all beta-protein, structural
genomics, PSI-2, protein structure initiative; 1.70A
{Pyrococcus furiosus} PDB: 2kl6_A (A:)
Length = 127
Score = 28.0 bits (62), Expect = 2.1
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 19 NSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARV-NLGTDDASNLT 70
+S+ A DL ++ P + A + V NLG +
Sbjct: 4 YDKLSNLATTFEFPDLTVEIKGPDVVGVNKLA---EYEVHVKNLGGIGVPSTK 53
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP;
2.50A {Thermus thermophilus} (A:25-107)
Length = 83
Score = 27.7 bits (62), Expect = 2.6
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 14/73 (19%)
Query: 295 MDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKA-IQELLQEVKELRDM 353
+D E++ L + E N+V + +P + L+ K L +
Sbjct: 9 LDREVQELKKRLQEVQTERNQV-------------AKRVPKAPPEEKEALIARGKALGEE 55
Query: 354 IDKQNEEHQDVQD 366
+ E ++ +
Sbjct: 56 AKRLEEALREKEA 68
>2efr_A General control protein GCN4 and tropomyosin 1 alpha chain;
coiled coil, destabilizing cluster, hydrophobic core,
contractIle protein; 1.80A {Saccharomyces cerevisiae}
PDB: 2efs_A 2d3e_A (A:)
Length = 155
Score = 27.5 bits (60), Expect = 2.7
Identities = 5/32 (15%), Positives = 16/32 (50%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
+++ +++L +V+EL E ++ +
Sbjct: 124 ISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli}
(A:1-27,A:149-257)
Length = 136
Score = 27.5 bits (61), Expect = 2.8
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 310 LKEINEVFVDTIGG--YLAPNPSVIIPHLAKAIQELLQEVKELRDM 353
+K + + +D + Y+ P V I +++ E EL +
Sbjct: 91 VKNDDYLILDAVNNQVYVNPTNEV-IDKXRAVQEQVASEKAELAKL 135
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3
subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP}
(E:357-473)
Length = 117
Score = 27.3 bits (61), Expect = 3.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 336 LAKAIQELLQEVKELRDMI 354
+A+ +Q+ L+ KEL+D+I
Sbjct: 10 VARKVQQTLERYKELQDII 28
>1yvl_A Signal transducer and activator of transcription
1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo
sapiens} (A:128-316)
Length = 189
Score = 26.9 bits (59), Expect = 4.0
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
+A+++Q++ Q++K+L ++ K EH +
Sbjct: 138 IVAESLQQVRQQLKKLEELEQKYTYEHDPITKN 170
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
protein/protease complex; 1.50A {Dengue virus 2} (B:)
Length = 185
Score = 26.7 bits (59), Expect = 4.9
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 196 GDIMCY----KRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG-PGYIHFDTDK 250
D++ Y K + W+ E Q A ++ + K + G G + D
Sbjct: 74 KDLISYGGGWKLEGE-WKEGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSP 132
Query: 251 GAVGCSYFLSDERLKKVHGESSASAREII 279
G G ++ ++G +
Sbjct: 133 GTSGSPIVDKKGKVVGLYGNGVVTRSGAY 161
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta,
translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y*
3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:1-110)
Length = 110
Score = 26.6 bits (59), Expect = 5.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
+A +++ QE LR +D D+Q +
Sbjct: 43 EAARKVSQEAARLRRTVDTFRSLESDLQGL 72
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} (A:1-103)
Length = 103
Score = 26.6 bits (59), Expect = 5.2
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 273 ASAREIIEQLK-FID-FNYLPE----SGMDSELRYLIGFSENNLKEINEVFVDTIGGYLA 326
+ + + + F +Y +R + +L+ + D L
Sbjct: 9 VDKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIE-VDYLDLEMFDPDLAD----LLI 63
Query: 327 PNPSVIIPHLAKAIQELLQEVKE 349
P +I +AI+ + + K
Sbjct: 64 EKPDDVIRAAQQAIRNIDRLRKN 86
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas
aeruginosa PAO1} (A:1-89)
Length = 89
Score = 26.7 bits (59), Expect = 5.3
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 123 LAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMR 160
+ L+ I + YA TP S +R
Sbjct: 53 SDAERIHRLMRLLVA-FEIFQGDTRDGYANTPTSHLLR 89
>3f9v_A Minichromosome maintenance protein MCM; replicative
helicase, DNA replication, MCM complex, AAA+ protein,
ATP-binding, DNA-binding; 4.35A {Sulfolobus
solfataricus} (A:1-105)
Length = 105
Score = 26.3 bits (58), Expect = 7.0
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 19/98 (19%)
Query: 276 REIIEQLKFIDF--NYLPESGMDSELRYLIGFSENNLKEINEVFVD---------TIGGY 324
+ + FI+F + + + +Y+ +E + ++ +
Sbjct: 2 IDYRD--VFIEFLTTFKGNNN---QNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYE 56
Query: 325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQ 362
+ N +I+P L A+ + + +L + E+
Sbjct: 57 IINNTKIILPILEGALYDH---ILQLDPTYQRDIEKVH 91
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase
A2 inhibitor, clara cell phospholipid-binding protein,
progesterone binding; HET: PCB; NMR {Rattus norvegicus}
(A:)
Length = 96
Score = 26.3 bits (58), Expect = 7.2
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 312 EINEVFVDTIGGYLAPNPSVIIPHLAK--AIQELLQEVKELRDMIDKQNEEHQD-VQDMS 368
+I F+ + L + S L +L +L+ ++D +E + + ++
Sbjct: 22 DICPGFLQVLEALLLGSESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLT 81
Query: 369 NTPLNSQ 375
L S
Sbjct: 82 EKILTSP 88
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled
coil, heptad repeat, leucine zipper, fusion protein;
1.9A {Saccharomyces cerevisiae} (A:)
Length = 59
Score = 26.1 bits (58), Expect = 8.1
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 340 IQELLQEVKELRDMIDKQNEEHQDVQDM 367
++ELL + L + + + + D+ ++
Sbjct: 9 VEELLSKNYHLENEVARLKKLVGDLLNV 36
>3ddj_A CBS domain-containing protein; NP_344512.1, structural
genomics, joint center for structural genomics, JCSG;
HET: AMP; 1.80A {Sulfolobus solfataricus}
(A:1-103,A:206-232)
Length = 130
Score = 26.1 bits (57), Expect = 8.2
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 299 LRYLIGFSENNLK--EINEVFVDTIGGYLAPNPSVIIPHLAKAIQEL 343
L + + +++ ++ + I Y PNP I LAKA+ +L
Sbjct: 71 LSTVESYCKDSCSQGDLYHISTTPIIDYXTPNPVNAIKQLAKAVDKL 117
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo
sapiens} (A:1-128,A:242-262)
Length = 149
Score = 25.9 bits (57), Expect = 9.4
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 318 VDTIGGYLAPNPSVIIPH-------LAKAIQELLQEVKELRDMIDK 356
+D G+ PNP +P +AK + +L++ +LR+ ++K
Sbjct: 20 IDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIES-GQLRERVEK 64
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET:
SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB:
3i58_A* 3i5u_A* 3i64_A* (A:1-90)
Length = 90
Score = 25.9 bits (57), Expect = 9.9
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 123 LAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRK 161
+L L+ H + Y T +R
Sbjct: 50 AHADSLDRLLRHLV-AVGLFTRDGQGVYGLTEFGEQLRD 87
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,768,026
Number of extensions: 122945
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 38
Length of query: 378
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 288
Effective length of database: 1,913,599
Effective search space: 551116512
Effective search space used: 551116512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)