RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781130|ref|YP_003065543.1| hypothetical protein
CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
(378 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 60.3 bits (146), Expect = 7e-10
Identities = 65/434 (14%), Positives = 118/434 (27%), Gaps = 189/434 (43%)
Query: 19 NSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARVNLGTDDASNLTKGKIIANL 78
++I + A L + + N + AR+ + K +
Sbjct: 98 GNDIHALAA-------KLLQENDTTLVKTKELIKNYITARI------MAKRPFDKKSNSA 144
Query: 79 LPFYPIQQG--------GGIGQLDNKIYLGWNGTQLLLQVDLSSMREVWT---------- 120
L F + +G GG G D+ Y +L R+++
Sbjct: 145 L-FRAVGEGNAQLVAIFGGQGNTDD--YF----EEL---------RDLYQTYHVLVGDLI 188
Query: 121 SQLAPRALQNLV---DHAHKPNHIVYT--------------TDSNQY-AATPLS------ 156
A L L+ A K V+T T Y + P+S
Sbjct: 189 KFSAET-LSELIRTTLDAEK----VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 157 -SFMRKLFSCHN-----GE--------TLH-Q----AIFQNGA----QFYNNSQRIAAFL 193
+ + GE T H Q A+ F+ + ++ L
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 194 DDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG-PGYIHFDTDKGA 252
+ G+ + N +L + + + ++ N G P
Sbjct: 304 -------------FFIGVRCYEAYPNTSLPPS---ILEDSLEN-NEGVP----------- 335
Query: 253 VGCSYFLSDERLKKVHGESSASAREIIEQL-KFID-FN-YLPES---------------- 293
S LS + + EQ+ +++ N +LP
Sbjct: 336 ---SPMLS------ISNLT-------QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 294 --------GMDSELRYL----------IGFSENNLKEINEVFVDTIGGYLAPNPSVIIPH 335
G++ LR I FSE LK N F+ + +P S
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-FL-PVA---SPFHS---HL 431
Query: 336 LAKAIQELLQEVKE 349
L A + +++ +
Sbjct: 432 LVPASDLINKDLVK 445
Score = 43.0 bits (101), Expect = 1e-04
Identities = 66/351 (18%), Positives = 103/351 (29%), Gaps = 159/351 (45%)
Query: 15 QAYPNSNISSSAYNNLLKDLALDNN--SPRP-IS-AGGTAADNAVQARVNLGTDDASNLT 70
+AYPN+++ S +L+D +L+NN P P +S + T VQ V + +N
Sbjct: 312 EAYPNTSLPPS----ILED-SLENNEGVPSPMLSISNLTQE--QVQDYV-----NKTNSH 359
Query: 71 KGKIIANLLPFYPIQQGGGIGQLDNKIYLGW-NG-TQLLLQVDLSSMREVWTSQLA--PR 126
LP ++ + NG L V ++ P+
Sbjct: 360 --------LP------------AGKQVEISLVNGAKNL---V------------VSGPPQ 384
Query: 127 ALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQN-----GAQ 181
+L L K + +Q + P S RKL F N +
Sbjct: 385 SLYGLNLTLRK---AKAPSGLDQ-SRIPFSE--RKL------------KFSNRFLPVASP 426
Query: 182 FYNN-----SQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLN 236
F+++ S I D V + I +
Sbjct: 427 FHSHLLVPASDLI---NKD----------LVKNNVSFNAKDIQIPV-------------- 459
Query: 237 MGRGPGYIHFDTDKGAVGCSYFLSDERLKKVHGESSAS-AREIIEQ-----------LKF 284
+DT G SD R S S + I++ +F
Sbjct: 460 ---------YDTFDG--------SDLR------VLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 285 -----IDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPS 330
+DF P G S L L + K+ V V + G L NP
Sbjct: 497 KATHILDFG--P--GGASGLGVLT----HRNKDGTGVRV-IVAGTLDINPD 538
Score = 38.4 bits (89), Expect = 0.003
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 54/153 (35%)
Query: 3 RI----REVYI----LPAGSQAYP-NSNISSSAYNNLLKDLALDNNSPRPISAGGTAADN 53
RI R++ LP S P +S++ A + + KDL +N +A
Sbjct: 406 RIPFSERKLKFSNRFLPVAS---PFHSHLLVPASDLINKDLVKNN---VSFNA------K 453
Query: 54 AVQARVNLGTDDASNL--TKGKIIANL----------------------LPFYPIQQGG- 88
+Q V T D S+L G I + L F P GG
Sbjct: 454 DIQIPV-YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP---GGA 509
Query: 89 -GIGQLDNKIYLGWNGTQLLL--QVDLSSMREV 118
G+G L ++ G G ++++ +D++ +
Sbjct: 510 SGLGVLTHRNKDG-TGVRVIVAGTLDINPDDDY 541
Score = 27.6 bits (61), Expect = 4.4
Identities = 55/238 (23%), Positives = 88/238 (36%), Gaps = 61/238 (25%)
Query: 170 TLHQAIF--QNGAQFYNN-SQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTK 226
T+H F + G + N S I + DG + K +K +++ EI +H+ + S K
Sbjct: 1673 TIH---FGGEKGKRIRENYSAMIFETIVDGKL---KTEK-IFK--EINEHSTSYTFRSEK 1723
Query: 227 NCLYKTT----VLNMGRGPGYIHFDTDKGAVGCSYFLSDERLKKVHGESS--ASAREI-- 278
L T L + + + KG + + L GE + AS ++
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKS-KGLIPADATFAGHSL----GEYAALASLADVMS 1778
Query: 279 IEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAK 338
IE L + F Y GM + + + L N G +A NP + +
Sbjct: 1779 IESLVEVVF-Y---RGMTMQ----VAVPRDELGRSNY-------GMIAINPGRVAASFS- 1822
Query: 339 AIQELLQEVKE--------LRDMIDKQNEEHQ-----DVQ--DMSNTPLNS---QKFD 378
QE LQ V E L ++++ E Q D++ D LN QK D
Sbjct: 1823 --QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET:
TAM; 2.60A {Enterobacteria phage K1F}
Length = 275
Score = 29.8 bits (66), Expect = 0.98
Identities = 8/118 (6%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 260 SDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMD-SELRYLIGFSENNLKEINEVFV 318
++ K + + + +I + +L + ++ R G ++++
Sbjct: 122 ANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHG 181
Query: 319 DTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQK 376
+V+ + + + E+ + D++ + + + ++
Sbjct: 182 LMDENSTNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEE 239
>2zz8_A LIPL32 protein; outer-membrane protein, unknown function; 2.01A
{Leptospira interrogans} PDB: 3frl_A*
Length = 241
Score = 29.3 bits (65), Expect = 1.4
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQE 346
Y I F+ E+ FV ++G P + P + +EL ++
Sbjct: 190 YRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQ 235
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 29.0 bits (64), Expect = 1.6
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSN 369
+ + + E+K L D+ D+ + + + +Q+ +
Sbjct: 14 VKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREH 47
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.0 bits (64), Expect = 1.8
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 295 MDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMI 354
ELR L + +E V + + L N Q L +E+R +
Sbjct: 75 TWQELRQLREQIRSLEEEKEAV-TEAVRA-LVVNQDNSQVQQDPQYQSLRARGREIRKQL 132
Query: 355 DKQNEEHQDVQD 366
+ +++
Sbjct: 133 TLLYPKEAQLEE 144
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xmp_A*
Length = 416
Score = 28.3 bits (63), Expect = 2.8
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 313 INEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDK 356
I VD G+L + + + + LL+ + ++M K
Sbjct: 350 IKFQIVDGETGFLVRDAN----EAVEVVLYLLKHPEVSKEMGAK 389
>2yqy_A TT2238, hypothetical protein TTHA0303; four-helix-bundle, NPPSFA,
national project on protein structural and functional
analyses; 2.00A {Thermus thermophilus HB8}
Length = 169
Score = 28.0 bits (61), Expect = 4.0
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 6/98 (6%)
Query: 259 LSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFV 318
L E + + + E + L E LR L + V
Sbjct: 31 ADPAWLSAPLREGAWTPLMVAEHV------ALVEDSTARVLRRLRRLAAGENLPPVPVKP 84
Query: 319 DTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDK 356
P + P +++E+L + R + +
Sbjct: 85 GEFKDGKPQAPEGVRPKGGLSLEEVLALLDRARAFLLE 122
>2z5k_A Transportin-1; nuclear transport, importin, exportin, karyopherin,
nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB:
2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* 2h4m_A 2ot8_A
Length = 890
Score = 27.5 bits (59), Expect = 4.8
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 306 SENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQN 358
N K + E TIG P + P L + I+ ++ +RD +K +
Sbjct: 760 RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS 812
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocysteine, aminoacrylate,
enzyme-product complex; HET: PDA; 1.55A {Synechocystis
SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 27.5 bits (60), Expect = 4.9
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 20/80 (25%)
Query: 93 LDNKIYLGWNGTQLLLQVDLSSMREVWTSQLAP--------RALQNLVDHAHK------- 137
L NK Y + G +L V L ++ ++ + +Q L+ +
Sbjct: 14 LANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN 73
Query: 138 --PNHIVYT---TDSNQYAA 152
PN I T T
Sbjct: 74 VDPNTITITDNVTTGCDIVL 93
>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET:
PEG; 2.20A {Bacillus phage ga-1}
Length = 129
Score = 27.3 bits (60), Expect = 5.1
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 260 SDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMD-SELRYLIGFSENNLKEINEVFV 318
SDER K S + E++KF + + E RY G + ++ E
Sbjct: 1 SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEG 60
Query: 319 DTIGGY 324
+ Y
Sbjct: 61 LSAFDY 66
>1bg1_A Protein (transcription factor STAT3B); transcription factor,
protein-DNA complex, cytokine activation; HET: DNA PTR;
2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
PDB: 3cwg_A
Length = 596
Score = 27.4 bits (60), Expect = 5.1
Identities = 6/31 (19%), Positives = 19/31 (61%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQD 366
+ K +Q+L Q++K + ++ D + ++ ++
Sbjct: 25 VRKRVQDLEQKMKVVENLQDDFDFNYKTLKS 55
>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein,
structural genomics, PSI, protein structure initiative;
2.90A {Legionella pneumophila} SCOP: c.108.1.23
Length = 470
Score = 27.5 bits (61), Expect = 5.1
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ 375
+ ++ Q+ QE+ +L+ I + + + N+ N +
Sbjct: 364 RSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPK 405
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A*
3a5d_A 1um2_C
Length = 578
Score = 27.4 bits (60), Expect = 5.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 334 PHLAKAIQELLQEVKELRDMI 354
P L AI ELLQ L++++
Sbjct: 448 PELRDAISELLQREAGLQEIV 468
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 27.2 bits (59), Expect = 6.4
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 334 PHLAKAIQELLQEVKELRDMIDKQNEE 360
++ KAI+ + + L+++I ++ EE
Sbjct: 271 ENVMKAIEGFEKSLNHLKELIVREAEE 297
>2re2_A Uncharacterized protein TA1041; NP_394501.1, protein of unknown
function, dinitrogenase iron-molybdenum cofactor; HET:
MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Length = 136
Score = 27.2 bits (60), Expect = 6.7
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 238 GRGPGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQ 281
G ++TD G V S+ L + ++
Sbjct: 35 GESEEVQIYETDGGNVRLIEKYSNPALNATAARGVFMLKSALDH 78
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA,
aminoacylation, translational regulation, protein/RNA,
ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 26.9 bits (59), Expect = 6.8
Identities = 45/292 (15%), Positives = 89/292 (30%), Gaps = 52/292 (17%)
Query: 115 MREVWTSQLAPRALQNLVDHAHKPNHIVYTT--DSNQYAATPLSSFMRKLFSCHNGETLH 172
+EV + R L H ++TT ++ +Y P++ ++
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYR 349
Query: 173 QA---IFQNGAQFYNNSQRIAAFL--------DDGDIMCYKRQKTVWQGIEIAQHTANIA 221
+ + G+ N L DD I C T Q + +
Sbjct: 350 DLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-----TEEQIRDEVNGCIRLV 404
Query: 222 LESTKNCLYKTTVLNMGRGP-GYI--HFDTDKGAVGCSYFLSDERLKKVH--GESSASAR 276
+ ++ V+ + P I D+ + L + + + GE +
Sbjct: 405 YDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGP 464
Query: 277 EIIEQLK------------FIDFN--------YLPESGMDSEL----RYLIGFSENNLKE 312
+I L +DF+ Y+ E R ++G E +
Sbjct: 465 KIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGI 524
Query: 313 INEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDM-----IDKQNE 359
+ E F +LAP VI+ + + + ++L + D +NE
Sbjct: 525 LTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNE 576
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens}
Length = 95
Score = 27.1 bits (60), Expect = 7.6
Identities = 6/33 (18%), Positives = 20/33 (60%)
Query: 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
+ + + + +E+ E+RD + +Q +++ + D+
Sbjct: 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDV 73
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold,
native; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1
b.78.1.1
Length = 236
Score = 26.8 bits (58), Expect = 7.7
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 162 LFSCHNGETLHQAIFQNGAQFYNNSQRIAAFLDDGDIMCYKRQKTVWQ 209
LF + + Q + + AQ S D +++ + VW
Sbjct: 4 LFGLSHEGSHPQTL--HAAQSLELSSFRFTMQSDCNLVLFDSDVRVWA 49
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 27.0 bits (58), Expect = 7.9
Identities = 24/235 (10%), Positives = 63/235 (26%), Gaps = 6/235 (2%)
Query: 119 WTSQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQN 178
+++A + + + + S + + K+ +++ +
Sbjct: 85 EIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEV 144
Query: 179 GAQFYNNSQRIAAFLDDGDIMCYKRQKTVWQ-GIEIAQHTANIALESTKNCLYKTTVLNM 237
+ + + + + GI+ + + L+
Sbjct: 145 SRRKEDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHT 204
Query: 238 GRGPGYIHFDTDKGAVGCSYFLS--DERLKKVHGESSASAR-EIIEQLKFIDFNYLPESG 294
G +E +K+ + E L ++ LP G
Sbjct: 205 PILVGLDGQKMSSSKGNYISVRDPPEEVERKIRKAYCPAGVVEENPILDIAKYHILPRFG 264
Query: 295 MDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKE 349
R + E+ D G L +P + +AK + LL++ ++
Sbjct: 265 KIVVERDAKFGGDVEYASFEELAEDFKSGQL--HPLDLKIAVAKYLNMLLEDARK 317
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 26.7 bits (58), Expect = 8.6
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 290 LPESGMDSELRYLIGFSENNLKEINEVFVDTIG---GY------LAPNPSVIIPHLAKAI 340
+ + S+ +IG E ++ + + +IG G+ + I+ +
Sbjct: 152 MESLNIKSDDAIMIGDREYDVIGALKNNLPSIGVTYGFGSYEELKNAGANYIVNSVD--- 208
Query: 341 QELLQEVKELRD 352
EL +++ ELR+
Sbjct: 209 -ELHKKILELRE 219
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, protein structure
initiative; 1.90A {Bacteroides uniformis atcc 8492}
Length = 328
Score = 26.6 bits (57), Expect = 9.1
Identities = 13/158 (8%), Positives = 41/158 (25%), Gaps = 12/158 (7%)
Query: 60 NLGTDDAS----NLTKGKIIANLLPFYPIQQGGGIGQ----LDNKIYLGWNGTQLLLQVD 111
N +A+ + ++ + + G + Q D ++ N + ++ +D
Sbjct: 11 NFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAID 70
Query: 112 LSSMREVWTSQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETL 171
+++ +EV + + Y T Y ++ ++ +
Sbjct: 71 INTFKEVGRIT----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM 126
Query: 172 HQAIFQNGAQFYNNSQRIAAFLDDGDIMCYKRQKTVWQ 209
+ + +T
Sbjct: 127 DMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKV 164
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,172,565
Number of extensions: 144451
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 40
Length of query: 378
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 284
Effective length of database: 3,414,294
Effective search space: 969659496
Effective search space used: 969659496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)