RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781130|ref|YP_003065543.1| hypothetical protein
CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
(378 letters)
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 28.1 bits (61), Expect = 1.2
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 306 SENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQN 358
N K + E TIG P + P L + I+ ++ +RD +K +
Sbjct: 758 RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS 810
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 108
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
+A+ ++E LQ KEL+D+I + +D
Sbjct: 10 IAQRVKETLQRYKELQDIIAILGLDELSEEDR 41
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 27.9 bits (62), Expect = 1.4
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ 375
+ ++ Q+ QE+ +L+ I + + + N+ N +
Sbjct: 363 RSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPK 404
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 114
Score = 27.3 bits (61), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQD 366
+A+ +Q+ L+ KEL+D+I + +D
Sbjct: 10 VARKVQQTLERYKELQDIIAILGMDELSDED 40
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQKFD 378
++ + + E+K L D+ D+ + + + +Q+ + K D
Sbjct: 13 NVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSD 56
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 26.9 bits (58), Expect = 2.5
Identities = 17/237 (7%), Positives = 63/237 (26%), Gaps = 17/237 (7%)
Query: 115 MREVWTSQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQA 174
+ ++ A+ + + + + L + +++
Sbjct: 83 RKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDE 142
Query: 175 IFQNGAQFYNNSQRIAAFLDDGDIMCYKRQKT-VWQGIEIAQHTANIALESTKNCLYKTT 233
+ Y Q D+ ++ + + + +
Sbjct: 143 NPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGE 202
Query: 234 VLNMGRGPGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYL-PE 292
+I D +E K+ + + I +L
Sbjct: 203 GKMSSSKGNFIAVDDSP----------EEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYP 252
Query: 293 SGMDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKE 349
+ ++ + N+ +E+ +F + +P + +A+ + ++L+ +++
Sbjct: 253 LTIKRPEKFGGDLTVNSYEELESLFKN--KEL---HPMDLKNAVAEELIKILEPIRK 304
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.7 bits (58), Expect = 3.2
Identities = 11/91 (12%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 271 SSASAREIIEQLKFIDFNYLPESGMDSELR----YLIGFSENNLKEINEVFVDTIGGYLA 326
++A++I+ ++ +YL + D +R + +VDTI +
Sbjct: 390 DRSNAQQIVAEML----SYLETA--DYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIR 443
Query: 327 PNPSVIIPHLAKAIQELLQEVKELRDMIDKQ 357
+ + + +++ +++ K
Sbjct: 444 IAGDYVSEEVWYRVIQIVINRDDVQGYAAKT 474
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.1 bits (57), Expect = 4.5
Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 34/233 (14%)
Query: 139 NHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQNG--AQFYNNSQRIAAFLDDG 196
+ +V + A +RK+ + + + + G A R
Sbjct: 38 DIVVLGVEKKSVAKLQDERTVRKICALDD----NVCMAFAGLTADARIVINRARVECQS- 92
Query: 197 DIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMG----RGPGYIHFDTDKGA 252
+ + TV +S + + L +G P D
Sbjct: 93 HRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY 152
Query: 253 VGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKE 312
G + S RE +E+ + + + ++ L+ ++ K
Sbjct: 153 HAWKAN--------AIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKN 204
Query: 313 INEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ 365
I + NP +E+++ I+K+ EE++ +
Sbjct: 205 IELAVMRRDQSLKILNP---------------EEIEKYVAEIEKEKEENEKKK 242
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 25.9 bits (57), Expect = 5.1
Identities = 20/99 (20%), Positives = 25/99 (25%), Gaps = 20/99 (20%)
Query: 110 VDLSSMREVWTSQLAPRALQNL-VDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNG 168
VD W L L N D+ K ++T N L
Sbjct: 178 VDADKWEVAW-QVLVSGNLDNCDADYEGK---WAFSTSYNSEKGMTLPEMTAA------- 226
Query: 169 ETLHQAIFQNGAQFYNNSQRIAAFLDDGDIMCYKRQKTV 207
E H +F N I + GD K V
Sbjct: 227 EMDHIVVF--------NIAEIEKAIAAGDYQELNGVKVV 257
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.0 bits (57), Expect = 5.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQKFD 378
E ++V+E+R IDK E ++V+ + L S D
Sbjct: 6 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD 43
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 25.6 bits (56), Expect = 6.7
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 11/113 (9%)
Query: 262 ERLKKVHGESSASAREIIEQLKFIDF-NYLPESGMDSELRYLIG---FSENNLKEINEVF 317
+++ + + A I E + + SE +G F + LK+ +EV
Sbjct: 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKD-GSETLVPVGAGSFIKAELKDTSEVI 73
Query: 318 VDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370
+ G A++ + + EL + K E + + D+
Sbjct: 74 MSVGAGVAIKKN------FEDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120
>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 392
Score = 25.7 bits (56), Expect = 6.8
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 318 VDTIGGYLAPNPSVIIPHLAKAIQELLQEVKEL------RDMIDK 356
+D G+ PNP +P + + + +L R+ ++K
Sbjct: 6 IDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEK 50
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 25.5 bits (56), Expect = 8.0
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 327 PNPSVIIPHLAKAIQELLQEVKELRDMIDK-QNEEHQDVQ 365
PN S +P L AI+EL Q+ +L D ++ + + +DV+
Sbjct: 83 PNISASVPQLKAAIKELQQQGYKLPDYPEEPKTDTEKDVK 122
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 24.9 bits (54), Expect = 10.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQD 363
K QE ++ + E+++ ID+ NE+ +
Sbjct: 24 SEKEQQEAIEHIDEVQNEIDRLNEQASE 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,366,675
Number of extensions: 62755
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 24
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)