BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781130|ref|YP_003065543.1| hypothetical protein
CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
         (378 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 378

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/378 (100%), Positives = 378/378 (100%)

Query: 1   MPRIREVYILPAGSQAYPNSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARVN 60
           MPRIREVYILPAGSQAYPNSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARVN
Sbjct: 1   MPRIREVYILPAGSQAYPNSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARVN 60

Query: 61  LGTDDASNLTKGKIIANLLPFYPIQQGGGIGQLDNKIYLGWNGTQLLLQVDLSSMREVWT 120
           LGTDDASNLTKGKIIANLLPFYPIQQGGGIGQLDNKIYLGWNGTQLLLQVDLSSMREVWT
Sbjct: 61  LGTDDASNLTKGKIIANLLPFYPIQQGGGIGQLDNKIYLGWNGTQLLLQVDLSSMREVWT 120

Query: 121 SQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQNGA 180
           SQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQNGA
Sbjct: 121 SQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQNGA 180

Query: 181 QFYNNSQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG 240
           QFYNNSQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG
Sbjct: 181 QFYNNSQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG 240

Query: 241 PGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELR 300
           PGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELR
Sbjct: 241 PGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELR 300

Query: 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEE 360
           YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEE
Sbjct: 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEE 360

Query: 361 HQDVQDMSNTPLNSQKFD 378
           HQDVQDMSNTPLNSQKFD
Sbjct: 361 HQDVQDMSNTPLNSQKFD 378


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 28.9 bits (63), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 265 KKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGY 324
           +K+   SSA  +EI+   + ID      S ++  +R  I   ENN  + +E+ +D I   
Sbjct: 191 EKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTK-SEMRIDNITQN 249

Query: 325 LAPNPSVIIPH---LAKAIQELLQEVKE 349
           L      II H   L  +I E+ + +KE
Sbjct: 250 LKQEREAIINHGTQLCTSIAEVHESLKE 277


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 24.3 bits (51), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 229 LYKTTVLNMGRGPGYIHFDTDKGAVGCS 256
           + +  V  + R PG IHFD DKG    S
Sbjct: 149 IQRIVVSQLHRSPG-IHFDHDKGRASLS 175


>gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 68

 Score = 24.3 bits (51), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 313 INEVFVDTIGGYLAPNPSVIIP-HLAKAIQEL-LQEVKELRDMIDKQNEEH 361
           I    +   G  LA  P  + P  L  A+  L L+E KEL+  ++++ EEH
Sbjct: 8   IASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEH 58


>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 478

 Score = 24.3 bits (51), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 5/34 (14%)

Query: 336 LAKAIQELLQEVKELRDMI-----DKQNEEHQDV 364
           +A+ +QE+LQ  K L+D+I     D+ +EE + V
Sbjct: 375 VARRVQEILQRYKSLQDIIAILGMDELSEEDKLV 408


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,119
Number of Sequences: 1233
Number of extensions: 10084
Number of successful extensions: 38
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 9
length of query: 378
length of database: 328,796
effective HSP length: 75
effective length of query: 303
effective length of database: 236,321
effective search space: 71605263
effective search space used: 71605263
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)