Query gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 150 No_of_seqs 117 out of 1622 Neff 7.6 Searched_HMMs 33803 Date Wed Jun 1 22:04:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781131.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3gud_A NECK appendage protein 99.7 1E-17 3E-22 116.1 2.7 75 75-149 1-120 (129) 2 >3gw6_A Endo-N-acetylneuramini 99.6 3E-17 8.8E-22 113.6 1.1 69 68-137 7-90 (127) 3 >1u4f_A Inward rectifier potas 21.3 44 0.0013 15.1 1.4 17 118-134 36-52 (61) 4 >2gix_A Inward rectifier potas 17.7 59 0.0017 14.5 1.4 16 119-134 32-47 (55) 5 >3jyc_A Inward-rectifier K+ ch 14.7 71 0.0021 14.0 1.2 16 119-134 41-56 (65) 6 >2iru_A Putative DNA ligase-li 14.0 94 0.0028 13.4 2.3 32 102-133 64-100 (132) 7 >2fao_A Probable ATP-dependent 13.2 99 0.0029 13.2 2.2 32 102-133 68-104 (182) 8 >2e4f_A G protein-activated in 11.4 1.1E+02 0.0033 12.9 1.5 17 117-134 35-51 (60) 9 >2ekf_A Ancient ubiquitous pro 11.3 89 0.0026 13.5 0.9 14 106-119 15-28 (61) 10 >2uzx_B Hepatocyte growth fact 11.1 1.2E+02 0.0034 12.8 2.3 21 113-133 28-51 (69) No 1 >>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1} (A:) Probab=99.68 E-value=1e-17 Score=116.10 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=63.5 Q ss_pred CCHHHCCCCCCCC--------CEEEEEEEECC-------CCCEEEEECHHHHHHHCCCEEEECC---------------- Q ss_conf 3513105511245--------32227978718-------9856997756788853780184379---------------- Q gi|254781131|r 75 SDRRMKCNVKPVA--------NLYQYRYLSDP-------KNVQRIGVIAQEISKIRPDTVVENN---------------- 123 (150) Q Consensus 75 SD~RLK~NI~~I~--------~l~~~~y~~~~-------~~~~~~GvIAQEVe~v~Pe~V~~~~---------------- 123 (150) ||+|||+||+++. +|++++|.|+. +..+++|||||||++++|++|..+. T Consensus 1 SD~RlK~~I~~i~~~~L~~i~~l~~~~y~~k~~~~~~~~~~~~~~G~IAQe~~~i~p~~v~~~~d~~~~~~~~~~~~~~~ 80 (129) T 3gud_A 1 SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEGLSAFDYGLVGYDEWEATEDE 80 (129) T ss_dssp --CCCCCSCCSCCHHHHHHHTTCCCEEECCHHHHHHHGGGSCCEEECCHHHHHHHHHHTTCCGGGGTSEEEEECCCCCCE T ss_pred CCHHHCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC T ss_conf 96513479833985899999708968988634433467787513141689998741203777443014750455556664 Q ss_pred --------------CCEEEEEHHCHHHHHHHHHHHHHHHC Q ss_conf --------------84688862023679999998865403 Q gi|254781131|r 124 --------------QGIKSVDYGRLFNIGQIQTKQKKNTA 149 (150) Q Consensus 124 --------------dg~~~VdY~~L~~l~~~~~~~~~~~~ 149 (150) ...++|+|..|++.++.++++++.-+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~i~~l~~~i 120 (129) T 3gud_A 81 YDSEGNLVEKGREAGNIYSIRPTECQWLEMACMRRKLERL 120 (129) T ss_dssp ECSSSCEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHH T ss_conf 3666761456730200320739999999999999999999 No 2 >>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F} (A:109-200,A:241-275) Probab=99.64 E-value=3e-17 Score=113.60 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=56.4 Q ss_pred CCCCCCCCCHHHCCCCCCCC--------CEEEEEEEECC-------CCCEEEEECHHHHHHHCCCEEEECCCCEEEEEHH Q ss_conf 33210013513105511245--------32227978718-------9856997756788853780184379846888620 Q gi|254781131|r 68 YQLAPLVSDRRMKCNVKPVA--------NLYQYRYLSDP-------KNVQRIGVIAQEISKIRPDTVVENNQGIKSVDYG 132 (150) Q Consensus 68 ~~~~~~~SD~RLK~NI~~I~--------~l~~~~y~~~~-------~~~~~~GvIAQEVe~v~Pe~V~~~~dg~~~VdY~ 132 (150) ++.+..+||+|||+||++++ +|++++|+|+. ++.+++|||||||++++|++|..+. ++++++|. T Consensus 7 ~~~~i~tSD~RlKtnI~~i~~~~Ld~I~~L~~vtY~~k~~~e~~~~~~r~~~G~IAQev~ev~Pe~V~~~~-d~~~~dy~ 85 (127) T 3gw6_A 7 GSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDE-NSTNCRYA 85 (127) T ss_dssp SSCCEEECTTCCBCCCBCCCHHHHHHHTTCCCEEECBHHHHHHHGGGSCBEEECCHHHHHHHHHHTTSSCS-CC--CCBT T ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCC T ss_conf 37646445720124765588799999983797798876643335776532014103024443111045555-56532133 Q ss_pred CHHHH Q ss_conf 23679 Q gi|254781131|r 133 RLFNI 137 (150) Q Consensus 133 ~L~~l 137 (150) .|... T Consensus 86 ~l~~~ 90 (127) T 3gw6_A 86 VLCYD 90 (127) T ss_dssp TEEEE T ss_pred EEECC T ss_conf 33055 No 3 >>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} (A:1-30,A:165-195) Probab=21.33 E-value=44 Score=15.15 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=12.5 Q ss_pred EEEECCCCEEEEEHHCH Q ss_conf 18437984688862023 Q gi|254781131|r 118 TVVENNQGIKSVDYGRL 134 (150) Q Consensus 118 ~V~~~~dg~~~VdY~~L 134 (150) -|...++|++.|||++. T Consensus 36 PVl~~E~g~Y~VDYs~F 52 (61) T 1u4f_A 36 PVLFEEKHYYKVDYSRF 52 (61) T ss_dssp CCEEECSSSEEEEGGGS T ss_pred EEEECCCCEEEEEHHHH T ss_conf 35883799089515872 No 4 >>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} (A:1-25,A:160-189) Probab=17.70 E-value=59 Score=14.45 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=12.1 Q ss_pred EEECCCCEEEEEHHCH Q ss_conf 8437984688862023 Q gi|254781131|r 119 VVENNQGIKSVDYGRL 134 (150) Q Consensus 119 V~~~~dg~~~VdY~~L 134 (150) |...++|++.|||++. T Consensus 32 Vl~~E~G~Y~VDYs~F 47 (55) T 2gix_A 32 VLFEEKHYYKVDYSRF 47 (55) T ss_dssp CEEECSSSEEEEGGGT T ss_pred EEEECCCEEEEEHHHC T ss_conf 7994799289757888 No 5 >>3jyc_A Inward-rectifier K+ channel KIR2.2; A transmembrane pore and A cytoplasmic pore, metal transport; 3.11A {Gallus gallus} (A:1-34,A:289-319) Probab=14.72 E-value=71 Score=14.00 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=12.1 Q ss_pred EEECCCCEEEEEHHCH Q ss_conf 8437984688862023 Q gi|254781131|r 119 VVENNQGIKSVDYGRL 134 (150) Q Consensus 119 V~~~~dg~~~VdY~~L 134 (150) |...++|+..|||++. T Consensus 41 vl~~e~g~y~VDYs~F 56 (65) T 3jyc_A 41 VLFEEKNQYKVDYSHF 56 (65) T ss_dssp CEEECSSSEEEETTST T ss_pred EEECCCCEEEEEHHHC T ss_conf 6986899089626873 No 6 >>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2irx_A* 2iry_A* 2r9l_A* (A:134-265) Probab=13.96 E-value=94 Score=13.35 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=24.7 Q ss_pred EEEEECHHHHHHHCCCEEEEC-----CCCEEEEEHHC Q ss_conf 699775678885378018437-----98468886202 Q gi|254781131|r 102 QRIGVIAQEISKIRPDTVVEN-----NQGIKSVDYGR 133 (150) Q Consensus 102 ~~~GvIAQEVe~v~Pe~V~~~-----~dg~~~VdY~~ 133 (150) ...-.||+++++..|+.+... -.|..=|||.+ T Consensus 64 ~~a~~iA~~l~~~~P~~~t~~~~k~~R~gkvfiDylq 100 (132) T 2iru_A 64 VLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQ 100 (132) T ss_dssp HHHHHHHHHHHHHCTTTEESSCCGGGCTTSEEEECGG T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCC T ss_conf 9999999999886843505674387489829997623 No 7 >>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A* (A:128-309) Probab=13.19 E-value=99 Score=13.23 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=24.5 Q ss_pred EEEEECHHHHHHHCCCEEEEC-----CCCEEEEEHHC Q ss_conf 699775678885378018437-----98468886202 Q gi|254781131|r 102 QRIGVIAQEISKIRPDTVVEN-----NQGIKSVDYGR 133 (150) Q Consensus 102 ~~~GvIAQEVe~v~Pe~V~~~-----~dg~~~VdY~~ 133 (150) ...-.||++|++..|+.+... -.|..=|||.. T Consensus 68 ~fa~~iA~~l~~~~P~~~t~~~~k~~R~gkvfiDylq 104 (182) T 2fao_A 68 DFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLR 104 (182) T ss_dssp HHHHHHHHHHHHHCTTTEECSCSGGGSTTSEEEECGG T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCC T ss_conf 9999999999886814647775186469828998623 No 8 >>2e4f_A G protein-activated inward rectifier potassium channel 2; cytoplasmic assembly, ION channel, beta-barrel, transport protein; 2.30A {Mus musculus} (A:1-29,A:162-192) Probab=11.43 E-value=1.1e+02 Score=12.92 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=12.3 Q ss_pred CEEEECCCCEEEEEHHCH Q ss_conf 018437984688862023 Q gi|254781131|r 117 DTVVENNQGIKSVDYGRL 134 (150) Q Consensus 117 e~V~~~~dg~~~VdY~~L 134 (150) .+|. -++|++.|||++. T Consensus 35 PVv~-~ekg~Y~VDYs~F 51 (60) T 2e4f_A 35 PVLT-LEDGFYEVDYNSF 51 (60) T ss_dssp CCEE-C--CCEEEEGGGT T ss_pred EEEE-ECCCEEEEEHHHC T ss_conf 6699-5698699887995 No 9 >>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=11.31 E-value=89 Score=13.48 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=10.8 Q ss_pred ECHHHHHHHCCCEE Q ss_conf 75678885378018 Q gi|254781131|r 106 VIAQEISKIRPDTV 119 (150) Q Consensus 106 vIAQEVe~v~Pe~V 119 (150) -||+-|+++||.+= T Consensus 15 ~mve~V~~mfP~vp 28 (61) T 2ekf_A 15 TLAQRVKEVLPHVP 28 (61) T ss_dssp HHHHHHHHHCSSSC T ss_pred HHHHHHHHHCCCCC T ss_conf 99999999868999 No 10 >>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A (B:1-28,B:465-505) Probab=11.07 E-value=1.2e+02 Score=12.85 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=0.0 Q ss_pred HHCCCEEEECC---CCEEEEEHHC Q ss_conf 53780184379---8468886202 Q gi|254781131|r 113 KIRPDTVVENN---QGIKSVDYGR 133 (150) Q Consensus 113 ~v~Pe~V~~~~---dg~~~VdY~~ 133 (150) +|-||+|.+++ +||--|.-++ T Consensus 28 eVSPeviVe~~~n~nGYTLVvTGk 51 (69) T 2uzx_B 28 EVSPEVIVEHTLNQNGYTLVITGK 51 (69) T ss_dssp SCCSCEEEECCTTSCCEEEEEETT T ss_pred CCCCCEEECCCCCCCCEEEEEECC T ss_conf 957620420002669759999678 Done!