RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781131|ref|YP_003065544.1| hypothetical protein
CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62]
         (150 letters)



>gnl|CDD|147258 pfam04989, CmcI, Cephalosporin hydroxylase.  Members of this family
           are about 220 amino acids long. The CmcI protein is
           presumed to represent the cephalosporin-7--hydroxylase.
           However this has not been experimentally verified.
          Length = 202

 Score = 28.0 bits (63), Expect = 1.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 88  NLYQYRYLSDP--KNVQRIGVIAQE-ISKIRPDTVVE 121
             Y +R+L  P  K  Q + V  QE I +++PD ++E
Sbjct: 3   YSYNFRWLGRPIIKLPQDM-VAYQELIWELKPDLIIE 38


>gnl|CDD|38865 KOG3661, KOG3661, KOG3661, Uncharacterized conserved protein
           [Function unknown].
          Length = 1019

 Score = 26.6 bits (58), Expect = 2.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 103 RIGVIAQEISKIRPDTVVENNQGIKSVDYGRLF--NIGQIQ 141
           R GVIAQE+  + PD V +    + +V+  R+F   +G  Q
Sbjct: 532 RTGVIAQELKAVLPDAVKDTGDYL-TVNEERVFYETVGATQ 571


>gnl|CDD|36346 KOG1131, KOG1131, KOG1131, RNA polymerase II transcription
           initiation/nucleotide excision repair factor TFIIH,
           5'-3' helicase subunit RAD3 [Transcription, Replication,
           recombination and repair].
          Length = 755

 Score = 25.7 bits (56), Expect = 6.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 10/39 (25%)

Query: 85  PVAN--LYQYRYLSDPKNVQRIGVIAQEISK-IRPDTVV 120
           P AN  +Y Y YL DPK       IA+ +SK +  ++VV
Sbjct: 198 PFANVIVYSYHYLLDPK-------IAELVSKELSKESVV 229


>gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
          structure and biogenesis].
          Length = 933

 Score = 25.2 bits (55), Expect = 8.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 43 QNIYQNQLSERKEGKKEFY 61
           +IY+    ER +GK +F 
Sbjct: 34 NDIYEKIREERNKGKPKFV 52


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0766    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,718,609
Number of extensions: 81562
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 10
Length of query: 150
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,426,972
Effective search space: 287753180
Effective search space used: 287753180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)