RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781131|ref|YP_003065544.1| hypothetical protein
CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62]
         (150 letters)



>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
            beta/beta'; Provisional.
          Length = 2836

 Score = 26.5 bits (58), Expect = 2.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 95   LSDPKNVQRIGVIAQEISKIRPDTVVENNQGIKSVDYGRLFNIGQI 140
            L D   V++I +   ++ KIR     E + G+ S+ YGR    G+I
Sbjct: 2284 LIDEDKVKQINIAGLDVVKIRSPLTCEISPGVCSLCYGRDLATGKI 2329


>gnl|CDD|181708 PRK09222, PRK09222, isocitrate dehydrogenase; Validated.
          Length = 482

 Score = 26.4 bits (59), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 45  IYQNQLSERKEGKKEFYDAV--NMGYQ 69
           IY   +S++K G KEF +AV  N+G +
Sbjct: 318 IYNEGVSKKKVGTKEFAEAVIENLGQK 344


>gnl|CDD|177271 PHA00360, II, replication initiation protein.
          Length = 421

 Score = 25.8 bits (56), Expect = 4.6
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 8/40 (20%)

Query: 27 LNNPTPIAPIDYAGIAQNIYQNQLSERKEGKKEFYDAVNM 66
          L +P    P  YAGIA  I+        EG K F   V +
Sbjct: 61 LKHPFESLPSHYAGIAFKIF--------EGGKNFEPCVEI 92


>gnl|CDD|181403 PRK08367, porA, pyruvate ferredoxin oxidoreductase subunit alpha;
           Reviewed.
          Length = 394

 Score = 25.6 bits (56), Expect = 5.6
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 13/71 (18%)

Query: 9   HEILSLMQNVTVPKLPISLNNPTPIAPIDYAGIAQNIYQNQLSERKEGKKEFY------- 61
           HE+L +   + +P + +++ N    API+      N +Q+ +S+R  G  +FY       
Sbjct: 89  HEVLFIAAGMRLP-IVMAIGNRALSAPIN----IWNDWQDTISQRDTGWMQFYAENNQEA 143

Query: 62  -DAVNMGYQLA 71
            D + + +++A
Sbjct: 144 LDLILIAFKVA 154


>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
          Length = 562

 Score = 25.4 bits (56), Expect = 5.9
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 104 IGVIAQEISKIRPDTVVENNQGIKSVDYGRLFNIGQIQTKQK 145
           I V++ E+ K+  D + E NQ I+++D        QI+T  K
Sbjct: 162 ISVLS-EMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK 202


>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
           subunit 1/adenylylsulfate kinase protein; Validated.
          Length = 568

 Score = 25.0 bits (55), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 99  KNVQRIGVIAQEISK 113
            N+ RIG +A EI+K
Sbjct: 449 LNILRIGFVASEITK 463


>gnl|CDD|179666 PRK03881, PRK03881, hypothetical protein; Provisional.
          Length = 467

 Score = 24.8 bits (55), Expect = 9.6
 Identities = 5/14 (35%), Positives = 12/14 (85%)

Query: 107 IAQEISKIRPDTVV 120
           +A+ I++ +PDT++
Sbjct: 37  LARRIAEKKPDTII 50


>gnl|CDD|163075 TIGR02924, ICDH_alpha, isocitrate dehydrogenase.  This family of
           mainly alphaproteobacterial enzymes is a member of the
           isocitrate/isopropylmalate dehydrogenase superfamily
           described by pfam00180. Every member of the seed of this
           model appears to have a TCA cycle lacking only a
           determined isocitrate dehydrogenase. The precise
           identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH --
           1.1.1.42) is unclear.
          Length = 473

 Score = 24.7 bits (54), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 44  NIYQNQLSERKEGKKEFYDAV 64
           +IY  + S++K G KEF +AV
Sbjct: 313 DIYNEKTSKQKVGTKEFAEAV 333


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,408,825
Number of extensions: 141455
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 13
Length of query: 150
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,157,793
Effective search space: 270256545
Effective search space used: 270256545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)