RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781133|ref|YP_003065546.1| hypothetical protein
CLIBASIA_05175 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>gnl|CDD|35420 KOG0199, KOG0199, KOG0199, ACK and related non-receptor tyrosine
           kinases [Signal transduction mechanisms].
          Length = 1039

 Score = 28.1 bits (62), Expect = 1.1
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 22/96 (22%)

Query: 64  RVIELSGASDCKSWLSRSVLKEIYSY---PWNQLCCQAVIHRIPDEDYPQHRMLTSLGGI 120
           R  + S ASD   W+    + E+++Y   PW       ++  I                 
Sbjct: 288 RHRKFSHASD--VWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDA--------------- 330

Query: 121 RYRIPRLRGRNAAENIYVITHEAWMHNKINRQSSVH 156
             R+PR   +  +E+IY I    W HN  +R +   
Sbjct: 331 GERLPR--PKYCSEDIYQIMKNCWAHNPADRPTFSA 364


>gnl|CDD|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the
           GT1 family of glycosyltransferases.  wbaZ in Salmonella
           enterica has been shown to possess the mannosyl
           transferase activity. The members of this family are
           found in certain bacteria and Archaea..
          Length = 351

 Score = 26.7 bits (60), Expect = 2.9
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 5/28 (17%)

Query: 13  AKPRINQIIA--DFVAKRIKDCSSGWDR 38
           +  R++  IA   FVA+RIK     + R
Sbjct: 150 SAARVDYFIANSRFVARRIKKY---YGR 174


>gnl|CDD|177012 CHL00073, chlN, photochlorophyllide reductase subunit N.
          Length = 457

 Score = 26.1 bits (58), Expect = 4.6
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 10/23 (43%)

Query: 56 YHNYCPISRVIELSGASDCKSWL 78
          YH +CPIS          C +WL
Sbjct: 18 YHTFCPIS----------CVAWL 30


>gnl|CDD|38741 KOG3533, KOG3533, KOG3533, Inositol 1,4,5-trisphosphate receptor
            [Signal transduction mechanisms].
          Length = 2706

 Score = 25.3 bits (55), Expect = 8.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 130  RNAAENIYVITHEAWMHNK 148
            R    NIY++ H+   HNK
Sbjct: 2128 REVGHNIYILAHQLARHNK 2146


>gnl|CDD|110369 pfam01364, Peptidase_C25, Peptidase family C25. 
          Length = 349

 Score = 25.0 bits (54), Expect = 9.6
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 4/42 (9%)

Query: 2   YNTIEITWGGNAKPRINQIIADFVAKRIKDCSSGWDRFVSMG 43
            N I+ T+GG         +   V K  KD     D +   G
Sbjct: 303 PNNIKRTFGGV----TMNGMFAMVEKYKKDGEHMLDTWTVFG 340


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,058,955
Number of extensions: 102157
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 6
Length of query: 159
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,405,363
Effective search space: 321591499
Effective search space used: 321591499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.6 bits)