RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781133|ref|YP_003065546.1| hypothetical protein
CLIBASIA_05175 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>gnl|CDD|182801 PRK10876, recB, exonuclease V subunit beta; Provisional.
          Length = 1181

 Score = 28.4 bits (64), Expect = 0.86
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 7/34 (20%)

Query: 101  HRIPDEDYPQHRMLTSLGGIRYRIPRLRGRNAAE 134
            HR+ D DY +H      GG+ Y    LRG +   
Sbjct: 1124 HRLADYDYQRH-----FGGVIYLF--LRGVDKEH 1150


>gnl|CDD|178448 PLN02857, PLN02857, octaprenyl-diphosphate synthase.
          Length = 416

 Score = 28.3 bits (63), Expect = 1.0
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 22/80 (27%)

Query: 17  INQIIADFVAKRIKDCSSGWDRFVSMG--ILKSNFLVAGIIYHNYCPISRVIELSGASDC 74
           I+Q+I DF +  IK  SS +D  V++   +LKS +  A +I               A+  
Sbjct: 232 ISQVIKDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLI---------------AAST 276

Query: 75  K-----SWLSRSVLKEIYSY 89
           K     S +  SV +++Y Y
Sbjct: 277 KSAAIFSGVDSSVKEQMYEY 296


>gnl|CDD|152369 pfam11934, DUF3452, Domain of unknown function (DUF3452).  This
           presumed domain is functionally uncharacterized. This
           domain is found in bacteria and eukaryotes. This domain
           is typically between 124 to 150 amino acids in length.
           This domain is found associated with pfam01858,
           pfam01857. This domain has a single completely conserved
           residue W that may be functionally important.
          Length = 138

 Score = 28.1 bits (63), Expect = 1.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 45  LKSNFLVAGIIYHNYCPISRVIELSGASDCKSWLSRSVLKEIYSYPW 91
           L+ NF+V  ++Y  Y  I R I L    +  S  S     +++ + W
Sbjct: 58  LERNFVVLSVLYKKYKRIFREIFLEPPEEPPSRSSPCSSSDLFRFGW 104


>gnl|CDD|184626 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA
           methylthiotransferase; Provisional.
          Length = 467

 Score = 27.3 bits (61), Expect = 1.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 15  PRINQIIADFVAKRIKDCSSG 35
           P+ N  I DFV  RI DC+S 
Sbjct: 438 PKENYKIGDFVNVRITDCTSA 458


>gnl|CDD|162688 TIGR02079, THD1, threonine dehydratase.  This model represents
          threonine dehydratase, the first step in the pathway
          converting threonine into isoleucine. At least two
          other clades of biosynthetic threonine dehydratases
          have been characterized by models TIGR01124 and
          TIGR01127. Those sequences described by this model are
          exclusively found in species containg the rest of the
          isoleucine pathway and which are generally lacking in
          members of the those other two clades of threonine
          dehydratases. Members of this clade are also often gene
          clustered with other elements of the isoleucine
          pathway.
          Length = 409

 Score = 27.0 bits (60), Expect = 2.3
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 44 ILKSNFLVAGIIYHNYCPISRVIELSGASDCKSWLSRSVLKEIYSY 89
          I  +   +  ++ H   P+     LS       +L R  L+ + SY
Sbjct: 3  IEAARKRLKEVVPHT--PLQLNERLSEKYGANIYLKREDLQPVRSY 46


>gnl|CDD|177916 PLN02277, PLN02277, H(+) -translocating inorganic pyrophosphatase.
          Length = 730

 Score = 26.3 bits (58), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 15  PRINQIIADFVAKRIKDCS-SGWDRFVSM 42
           PR   +IAD V   + DC+  G D F S+
Sbjct: 222 PRNPAVIADLVGDNVGDCAARGADLFESI 250


>gnl|CDD|161679 TIGR00045, TIGR00045, glycerate kinase.  The only characterized
           member of this family so far is the glycerate kinase
           GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after
           glyoxylate carboligase and 2-hydroxy-3-oxopropionate
           reductase (tartronate semialdehyde reductase) in the
           conversion of glyoxylate to 3-phosphoglycerate (the
           D-glycerate pathway) as a part of allantoin degradation.
          Length = 375

 Score = 26.1 bits (58), Expect = 3.9
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 6   EITWGGNAKPRINQIIADFVAKRIKDC 32
           E+  GG A   +  I    +  R+KD 
Sbjct: 159 ELGPGGGALAELASIDLSNLDPRLKDV 185


>gnl|CDD|162708 TIGR02109, PQQ_syn_pqqE, coenzyme PQQ biosynthesis protein E.  This
           model describes coenzyme PQQ biosynthesis protein E, a
           gene required for the biosynthesis of
           pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is
           required for some glucose dehydrogenases and alcohol
           dehydrogenases.
          Length = 358

 Score = 25.8 bits (57), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 13  AKPRINQIIADFVAKRIKDCSSGWDR 38
               I+ ++ D+ A+R K C  GW R
Sbjct: 218 GGLVIDYVVPDYYAERPKACMGGWGR 243


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,630,063
Number of extensions: 155316
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 10
Length of query: 159
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,136,185
Effective search space: 301941505
Effective search space used: 301941505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.3 bits)