RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781133|ref|YP_003065546.1| hypothetical protein
CLIBASIA_05175 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe
          crab (Limulus polyphemus) [TaxId: 6850]}
          Length = 94

 Score = 26.2 bits (58), Expect = 1.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 67 ELSGASDCKSWLSRSVLKEIY 87
          +L  ASDCKS L + + K+++
Sbjct: 15 KLQEASDCKSLLKKHLTKDVF 35


>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 124

 Score = 24.2 bits (52), Expect = 5.3
 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 78  LSRSVLKEIYSYPWNQLCCQAVIHRIPDEDYPQHRMLTSLGGIRYRIPRLRGRNAAENIY 137
              S++  +YS    +   +    R+P+       +   L G+   + R+      +   
Sbjct: 9   FGDSLINFLYSLALTEFLGKPTGDRVPNASLA---IALELTGLSKNLRRVDKHAKGDYAE 65

Query: 138 VITHEAWMHNKINRQSSV 155
            +  +AW+   I+ + +V
Sbjct: 66  ALIAKAWLMGLISEREAV 83


>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl
           transferase 2, TUTase 2, RET2 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 259

 Score = 23.3 bits (50), Expect = 9.8
 Identities = 4/25 (16%), Positives = 10/25 (40%), Gaps = 1/25 (4%)

Query: 75  KSWLSRSVLKEIYSYPWNQLCCQAV 99
           +  L    + E++ Y W+ +     
Sbjct: 221 RDVLDVRFVPEMFMYRWD-ISFVGY 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 657,720
Number of extensions: 29600
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 8
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.4 bits)