RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781133|ref|YP_003065546.1| hypothetical protein CLIBASIA_05175 [Candidatus Liberibacter asiaticus str. psy62] (159 letters) >d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]} Length = 94 Score = 26.2 bits (58), Expect = 1.4 Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 67 ELSGASDCKSWLSRSVLKEIY 87 +L ASDCKS L + + K+++ Sbjct: 15 KLQEASDCKSLLKKHLTKDVF 35 >d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]} Length = 124 Score = 24.2 bits (52), Expect = 5.3 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 78 LSRSVLKEIYSYPWNQLCCQAVIHRIPDEDYPQHRMLTSLGGIRYRIPRLRGRNAAENIY 137 S++ +YS + + R+P+ + L G+ + R+ + Sbjct: 9 FGDSLINFLYSLALTEFLGKPTGDRVPNASLA---IALELTGLSKNLRRVDKHAKGDYAE 65 Query: 138 VITHEAWMHNKINRQSSV 155 + +AW+ I+ + +V Sbjct: 66 ALIAKAWLMGLISEREAV 83 >d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 259 Score = 23.3 bits (50), Expect = 9.8 Identities = 4/25 (16%), Positives = 10/25 (40%), Gaps = 1/25 (4%) Query: 75 KSWLSRSVLKEIYSYPWNQLCCQAV 99 + L + E++ Y W+ + Sbjct: 221 RDVLDVRFVPEMFMYRWD-ISFVGY 244 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.137 0.442 Gapped Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 657,720 Number of extensions: 29600 Number of successful extensions: 92 Number of sequences better than 10.0: 1 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 8 Length of query: 159 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 81 Effective length of database: 1,336,656 Effective search space: 108269136 Effective search space used: 108269136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 49 (23.4 bits)