BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781133|ref|YP_003065546.1| hypothetical protein
CLIBASIA_05175 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781133|ref|YP_003065546.1| hypothetical protein CLIBASIA_05175 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 159

 Score =  331 bits (849), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MYNTIEITWGGNAKPRINQIIADFVAKRIKDCSSGWDRFVSMGILKSNFLVAGIIYHNYC 60
           MYNTIEITWGGNAKPRINQIIADFVAKRIKDCSSGWDRFVSMGILKSNFLVAGIIYHNYC
Sbjct: 1   MYNTIEITWGGNAKPRINQIIADFVAKRIKDCSSGWDRFVSMGILKSNFLVAGIIYHNYC 60

Query: 61  PISRVIELSGASDCKSWLSRSVLKEIYSYPWNQLCCQAVIHRIPDEDYPQHRMLTSLGGI 120
           PISRVIELSGASDCKSWLSRSVLKEIYSYPWNQLCCQAVIHRIPDEDYPQHRMLTSLGGI
Sbjct: 61  PISRVIELSGASDCKSWLSRSVLKEIYSYPWNQLCCQAVIHRIPDEDYPQHRMLTSLGGI 120

Query: 121 RYRIPRLRGRNAAENIYVITHEAWMHNKINRQSSVHKSL 159
           RYRIPRLRGRNAAENIYVITHEAWMHNKINRQSSVHKSL
Sbjct: 121 RYRIPRLRGRNAAENIYVITHEAWMHNKINRQSSVHKSL 159


>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 311

 Score = 24.3 bits (51), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 96  CQAVIHRIPDEDYPQHRMLTSLGGIRYRIPRLRGRN 131
            QA+  ++P E+YP+   L  +G   +R  +L G N
Sbjct: 142 SQAIFQKMPLEEYPR---LQKIGINYFRDFKLLGTN 174


>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 342

 Score = 23.5 bits (49), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 53  GIIYHNYCPISRVIELSGASDC 74
           G I H    IS V +LSGAS C
Sbjct: 128 GFIMHKKKGISSVSQLSGASIC 149


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 21.9 bits (45), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 36 WDRFVSMGILKSNFLVAGIIYHN 58
          ++RF+ +   K++ + AG IY N
Sbjct: 75 YERFMGISTAKADNITAGRIYKN 97


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1386

 Score = 21.9 bits (45), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 3    NTIE-ITWGGNAKPRINQIIADFVAKR 28
            N IE I WG +  P + +++  FVA +
Sbjct: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMK 1081


>gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 281

 Score = 21.6 bits (44), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 25 VAKRIKDCSSGWDRFVSMGILKSNFLVAGIIYHNYCPISRVIELSGASD 73
          +A  + +CS  W  F    +   +F V   I H Y  I R++ ++GA D
Sbjct: 30 IASVLNECSFDWQDFECRELPLGDFCVLRSILHQY-NIGRIV-VAGAID 76


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 21.6 bits (44), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 12/71 (16%)

Query: 18  NQIIADFVAKRIKDCSSGWDRFVSMGILKSNFLVAGIIYHNYCPISRVIELSGASDCKSW 77
           NQ+I+    + ++  ++ W +++     +S          +YCP    +  +G ++ K+ 
Sbjct: 514 NQVIS---KQELQSLANNWHKYLEAEYKES---------ESYCPEKLGLLHNGENERKNS 561

Query: 78  LSRSVLKEIYS 88
           +S+ +LK+I S
Sbjct: 562 VSKEILKKIGS 572


>gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 333

 Score = 21.2 bits (43), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 137 YVITHEAWMHNKINRQSSV 155
           YV+  E   HNK+N   SV
Sbjct: 148 YVVERELLQHNKVNGLRSV 166


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.137    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,661
Number of Sequences: 1233
Number of extensions: 3676
Number of successful extensions: 11
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 159
length of database: 328,796
effective HSP length: 67
effective length of query: 92
effective length of database: 246,185
effective search space: 22649020
effective search space used: 22649020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 35 (18.1 bits)