Query         gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 320
No_of_seqs    163 out of 290
Neff          6.6 
Searched_HMMs 33803
Date          Wed Jun  1 22:31:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781134.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3hxj_A Pyrrolo-quinoline quin  66.7     7.4 0.00022   17.7   3.8   29  166-199     8-36  (40)
  2 >3ei3_A DNA damage-binding pro  28.3      31 0.00093   14.1   1.8   15   71-85     26-40  (44)
  3 >3hxj_A Pyrrolo-quinoline quin  23.4      28 0.00082   14.4   0.8   30  152-181    85-116 (127)
  4 >2pbi_B Guanine nucleotide-bin  17.7      57  0.0017   12.7   1.5   22  162-183    29-50  (92)
  5 >1blf_A Lactoferrin; transferr  13.8      63  0.0019   12.4   0.8   21   63-83    107-127 (162)
  6 >2ns0_A Hypothetical protein;   13.5      66   0.002   12.3   0.8   27   29-57     54-80  (85)
  7 >1h45_A Lactoferrin; metal tra  13.2      67   0.002   12.2   0.8   19   63-81    107-125 (162)
  8 >2vz8_A Fatty acid synthase; t  12.5      66   0.002   12.3   0.6   22  138-159    92-113 (114)
  9 >3fcs_A Integrin, alpha 2B; be  12.0      81  0.0024   11.8   3.3   23   18-40     27-54  (110)
 10 >2d3i_A Ovotransferrin; alumin  11.4      83  0.0025   11.7   0.8   16   63-78    106-121 (159)

No 1  
>>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., structural genomics, PSI-2; 2.00A {Methanococcus maripaludis C7} (A:257-296)
Probab=66.73  E-value=7.4  Score=17.74  Aligned_cols=29  Identities=17%  Similarity=0.493  Sum_probs=20.3

Q ss_pred             ECCEEEEECCCCEEEECCCCCCCCCCEEEEEEEE
Q ss_conf             0442999405838997442567577507999982
Q gi|254781134|r  166 ANENLFFGDYEGTFWQGDISGSDNARPFIGIYLS  199 (320)
Q Consensus       166 ~~~~lyfG~~dG~Vy~~e~G~sddG~~i~a~y~s  199 (320)
                      .++.+|||..||++|--+.-++     ..+.|.+
T Consensus         8 ~dG~IyvGs~Dg~lYai~~~G~-----l~W~f~t   36 (40)
T 3hxj_A            8 NTDTIYFGSYDGHLYAINPDGT-----EKWNFET   36 (40)
T ss_dssp             TTSCEEEECTTCEEEEECTTSC-----EEEEEEC
T ss_pred             CCCEEEEECCCCEEEEEECCCC-----EEEEEEC
T ss_conf             6999999918998999989999-----9999979


No 2  
>>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 2b5n_A (A:33-76)
Probab=28.29  E-value=31  Score=14.13  Aligned_cols=15  Identities=27%  Similarity=0.678  Sum_probs=10.9

Q ss_pred             CEEEEECCCEEEEEE
Q ss_conf             099992688065210
Q gi|254781134|r   71 DVWIATNNGLISMKN   85 (320)
Q Consensus        71 Dl~fls~dGlr~ls~   85 (320)
                      +|-.++|+||||+-.
T Consensus        26 Ei~lvtpeGL~p~~d   40 (44)
T 3ei3_A           26 EIYVVTAEGLRPVKE   40 (44)
T ss_dssp             EEEEEETTEEEEEEE
T ss_pred             EEEEECCCCEEEEEE
T ss_conf             999988995799999


No 3  
>>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., structural genomics, PSI-2; 2.00A {Methanococcus maripaludis C7} (A:1-93,A:297-330)
Probab=23.41  E-value=28  Score=14.44  Aligned_cols=30  Identities=20%  Similarity=0.500  Sum_probs=17.8

Q ss_pred             EEEEECCCE--EEEEEECCEEEEECCCCEEEE
Q ss_conf             378635512--799820442999405838997
Q gi|254781134|r  152 WSSFHNWFT--QSYVVANENLFFGDYEGTFWQ  181 (320)
Q Consensus       152 ws~~~g~~a--~~~~~~~~~lyfG~~dG~Vy~  181 (320)
                      |.-+.+|+-  ......++++|||+.+|..|-
T Consensus        85 ~~~Te~wrF~~~~~ID~~G~I~FGT~~G~~Y~  116 (127)
T 3hxj_A           85 PDGTEKWRFIATPVIDENGTIYFGTRNGKFYA  116 (127)
T ss_dssp             CCGGGGGGSCSCCEECTTCCEEEECTTSCEEE
T ss_pred             CCCCEEEEEEEEEEEECCCEEEEEECCCEEEE
T ss_conf             45550332088408933999999979998999


No 4  
>>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, beta propeller, signaling protein; 1.95A {Mus musculus} (B:44-63,B:283-354)
Probab=17.65  E-value=57  Score=12.67  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=10.2

Q ss_pred             EEEEECCEEEEECCCCEEEECC
Q ss_conf             9982044299940583899744
Q gi|254781134|r  162 SYVVANENLFFGDYEGTFWQGD  183 (320)
Q Consensus       162 ~~~~~~~~lyfG~~dG~Vy~~e  183 (320)
                      +|..-...++-|..||.++-.|
T Consensus        29 ~~sp~g~~lasg~~Dg~I~iWd   50 (92)
T 2pbi_B           29 DFSLSGRLLFAGYNDYTINVWD   50 (92)
T ss_dssp             EECTTSSEEEEEETTSCEEEEE
T ss_pred             EECCCCCEEEEEECCCEEEEEE
T ss_conf             9889999999997989799999


No 5  
>>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} (A:91-252)
Probab=13.78  E-value=63  Score=12.38  Aligned_cols=21  Identities=10%  Similarity=0.058  Sum_probs=12.1

Q ss_pred             HHEEEECCCEEEEECCCEEEE
Q ss_conf             113420780999926880652
Q gi|254781134|r   63 RAIVFVKNDVWIATNNGLISM   83 (320)
Q Consensus        63 ~~i~~~GgDl~fls~dGlr~l   83 (320)
                      ||+++-+||++|+..+-++..
T Consensus       107 rCL~eg~GDVAFv~~~~v~~~  127 (162)
T 1blf_A          107 KCLQDGAGDVAFVKETTVFEN  127 (162)
T ss_dssp             HHHHTTSCSEEEEETTHHHHH
T ss_pred             HHHHHCCCCEEEEECCCHHHC
T ss_conf             999828961799732205432


No 6  
>>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:)
Probab=13.51  E-value=66  Score=12.27  Aligned_cols=27  Identities=26%  Similarity=0.167  Sum_probs=20.1

Q ss_pred             ECCCCEEEEEECCCCCCCCEEEEEEEEEC
Q ss_conf             63881899960588875624896588704
Q gi|254781134|r   29 STLGEVAVYGGDNPDDSSSFSLKAIYHIG   57 (320)
Q Consensus        29 ~~~g~v~v~~g~~p~~~~~~~l~~~~~~~   57 (320)
                      -.+|+|.|+|+--|.++.+|.  |+|++.
T Consensus        54 a~~G~i~I~qkG~pVdp~~~r--GpiRir   80 (85)
T 2ns0_A           54 ADAGEVEVTQKGAVVDPRSAR--GPIRIR   80 (85)
T ss_dssp             HHTTSEEEEETTEECCTTTCC--SCCEEE
T ss_pred             HHCCCEEEEECCEECCCCCCC--CCEEEE
T ss_conf             877968997799874711278--755840


No 7  
>>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} (A:92-253)
Probab=13.23  E-value=67  Score=12.24  Aligned_cols=19  Identities=11%  Similarity=0.060  Sum_probs=10.7

Q ss_pred             HHEEEECCCEEEEECCCEE
Q ss_conf             1134207809999268806
Q gi|254781134|r   63 RAIVFVKNDVWIATNNGLI   81 (320)
Q Consensus        63 ~~i~~~GgDl~fls~dGlr   81 (320)
                      ||+++-+||++|+..+-+.
T Consensus       107 rCL~eg~GDVAFv~~~~v~  125 (162)
T 1h45_A          107 KCLRDGAGDVAFIGESTVF  125 (162)
T ss_dssp             HHHHTTSCSEEEEETTHHH
T ss_pred             HHHHCCCCCEEEECCCCHH
T ss_conf             6776199207984165266


No 8  
>>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* (A:1121-1124,A:1410-1519)
Probab=12.54  E-value=66  Score=12.28  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=17.2

Q ss_pred             CEEEEEEECCCCCEEEEEECCC
Q ss_conf             1014676212353037863551
Q gi|254781134|r  138 SDKTFVMNVAHNNRWSSFHNWF  159 (320)
Q Consensus       138 ~~~~~v~~~~~~gaws~~~g~~  159 (320)
                      .....++|..+.|+|..|+-++
T Consensus        92 l~kdL~~NVyrnG~WGSyRHl~  113 (114)
T 2vz8_A           92 LQGDLVMNVYRDGAWGAFRHFP  113 (114)
T ss_dssp             HHSCCSEEEEETTEEEEECCEE
T ss_pred             HCCCCEEEEECCCCCCCEECCC
T ss_conf             5488524553044211100254


No 9  
>>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} (A:1-17,A:359-451)
Probab=12.04  E-value=81  Score=11.77  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=13.6

Q ss_pred             CCCCCEEEEEEE-----CCCCEEEEEEC
Q ss_conf             578530799996-----38818999605
Q gi|254781134|r   18 GDGLSTLCVFLS-----TLGEVAVYGGD   40 (320)
Q Consensus        18 g~g~~~~~v~i~-----~~g~v~v~~g~   40 (320)
                      |+|+.|++|--.     .+|.|.||.|.
T Consensus        27 gDG~~DiaVGAP~~g~~~~G~VyIy~G~   54 (110)
T 3fcs_A           27 RDGYNDIAVAAPYGGPSGRGQVLVFLGQ   54 (110)
T ss_dssp             CSSSCEEEEEETTCSTTSSCEEEEECEE
T ss_pred             CCCCCCEEECCCCCCCCCCCEEEEECCC
T ss_conf             8876534670676777886379999078


No 10 
>>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} (A:91-249)
Probab=11.37  E-value=83  Score=11.70  Aligned_cols=16  Identities=19%  Similarity=0.115  Sum_probs=0.0

Q ss_pred             HHEEEECCCEEEEECC
Q ss_conf             1134207809999268
Q gi|254781134|r   63 RAIVFVKNDVWIATNN   78 (320)
Q Consensus        63 ~~i~~~GgDl~fls~d   78 (320)
                      ||+++=+||++|+..+
T Consensus       106 rCL~eg~GDVAFv~~~  121 (159)
T 2d3i_A          106 HCLKDGKGDVAFVKHT  121 (159)
T ss_dssp             HHHHTTSCSEEEEETT
T ss_pred             HHHHCCCCCEEEEECC
T ss_conf             8875489846999652


Done!