Query gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 320 No_of_seqs 163 out of 290 Neff 6.6 Searched_HMMs 23785 Date Wed Jun 1 01:11:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781134.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3daa_A D-amino acid aminotrans 18.5 38 0.0016 12.8 2.6 18 169-187 166-183 (277) 2 2d3i_A Ovotransferrin; aluminu 13.0 49 0.002 12.2 0.8 14 63-76 196-209 (686) 3 1h76_A Serotransferrin; iron t 12.2 53 0.0022 11.9 0.8 15 71-85 226-241 (696) 4 3mc2_A Inhibitor of carbonic a 9.0 74 0.0031 11.1 0.6 13 63-75 199-211 (687) 5 3csw_A BCAT, putative branched 8.5 77 0.0032 11.0 1.7 36 168-205 163-198 (285) 6 2ory_A Lipase; alpha/beta hydr 7.6 85 0.0036 10.8 0.8 18 32-49 83-101 (346) 7 1iye_A Branched-chain amino ac 7.4 87 0.0037 10.7 4.0 19 169-187 182-200 (309) 8 1l4d_B Streptokinase; plasmino 6.6 95 0.004 10.5 1.6 18 165-182 86-103 (122) 9 1jxc_A Putative trypsin inhibi 6.5 90 0.0038 10.6 0.1 11 62-72 9-19 (68) 10 2ns0_A Hypothetical protein; r 6.4 98 0.0041 10.4 0.8 26 30-57 55-80 (85) No 1 >3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Probab=18.55 E-value=38 Score=12.79 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=10.0 Q ss_pred EEEEECCCCEEEECCCCCC Q ss_conf 2999405838997442567 Q gi|254781134|r 169 NLFFGDYEGTFWQGDISGS 187 (320) Q Consensus 169 ~lyfG~~dG~Vy~~e~G~s 187 (320) .+++ +.+|+|...-++|- T Consensus 166 ~~l~-d~~g~v~Egs~sNv 183 (277) T 3daa_A 166 EAIL-HRNNTVTEGSSSNV 183 (277) T ss_dssp EEEE-EETTEEEEETTBEE T ss_pred EEEE-ECCCEEEECCCEEE T ss_conf 1146-03989998787069 No 2 >2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Probab=12.97 E-value=49 Score=12.17 Aligned_cols=14 Identities=21% Similarity=0.090 Sum_probs=7.4 Q ss_pred HHEEEECCCEEEEE Q ss_conf 11342078099992 Q gi|254781134|r 63 RAIVFVKNDVWIAT 76 (320) Q Consensus 63 ~~i~~~GgDl~fls 76 (320) ||+.+-+||++|+- T Consensus 196 rCL~eg~GdVAFvk 209 (686) T 2d3i_A 196 HCLKDGKGDVAFVK 209 (686) T ss_dssp HHHHTTSCSEEEEE T ss_pred HHHHCCCCCEEEEE T ss_conf 88754898469996 No 3 >1h76_A Serotransferrin; iron transport, glycoprotein, metal-binding; HET: NAG; 2.15A {Sus scrofa} SCOP: c.94.1.2 c.94.1.2 PDB: 1jnf_A 2hav_A* 2hau_A* 1suv_E Probab=12.17 E-value=53 Score=11.94 Aligned_cols=15 Identities=0% Similarity=0.014 Sum_probs=7.9 Q ss_pred CEEEEECCCE-EEEEE Q ss_conf 0999926880-65210 Q gi|254781134|r 71 DVWIATNNGL-ISMKN 85 (320) Q Consensus 71 Dl~fls~dGl-r~ls~ 85 (320) |--+|.+||- +||.. T Consensus 226 ~y~lLC~DGt~~pi~~ 241 (696) T 1h76_A 226 QYELLCRDNTRRPVDD 241 (696) T ss_dssp GEEEECTTSCEEEGGG T ss_pred CEEEECCCCCCCCCCC T ss_conf 6589768998356888 No 4 >3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Probab=8.98 E-value=74 Score=11.13 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=7.3 Q ss_pred HHEEEECCCEEEE Q ss_conf 1134207809999 Q gi|254781134|r 63 RAIVFVKNDVWIA 75 (320) Q Consensus 63 ~~i~~~GgDl~fl 75 (320) ||+.+-+||++|+ T Consensus 199 rCL~eg~GDVAFv 211 (687) T 3mc2_A 199 KCLQDGTADVSFV 211 (687) T ss_dssp HHHHTTSCSEEEE T ss_pred HHHHCCCCCEEEE T ss_conf 8886089647999 No 5 >3csw_A BCAT, putative branched-chain-amino-acid aminotransferase; TM0831, structural genomics, joint center for structural genomics, JCSG; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Probab=8.53 E-value=77 Score=11.02 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=18.0 Q ss_pred CEEEEECCCCEEEECCCCCCCCCCEEEEEEEECCCCCC Q ss_conf 42999405838997442567577507999982576778 Q gi|254781134|r 168 ENLFFGDYEGTFWQGDISGSDNARPFIGIYLSPFHAID 205 (320) Q Consensus 168 ~~lyfG~~dG~Vy~~e~G~sddG~~i~a~y~sp~~~fg 205 (320) +...+-+.+|+|...-.+|-|-= ....+.||...-+ T Consensus 163 ~d~illn~~g~V~Eg~~sNif~~--~~~~~~TP~~~~g 198 (285) T 3csw_A 163 YDVILLGLNGQVCEGSFSNVFLV--KEGKLITPSLDSG 198 (285) T ss_dssp SEEEEECTTSBEEEESSSEEEEE--ETTEEEEECGGGT T ss_pred CCCEEECCCCCEEECCCEEEEEE--ECCEEEECCCCCC T ss_conf 75088989998744375379999--8997997897678 No 6 >2ory_A Lipase; alpha/beta hydrolase; 2.20A {Photobacterium SP} Probab=7.56 E-value=85 Score=10.77 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=12.7 Q ss_pred CCE-EEEEECCCCCCCCEE Q ss_conf 818-999605888756248 Q gi|254781134|r 32 GEV-AVYGGDNPDDSSSFS 49 (320) Q Consensus 32 g~v-~v~~g~~p~~~~~~~ 49 (320) +++ ++|+||+|.+..+|. T Consensus 83 ~~~VVafRGT~~~S~~dW~ 101 (346) T 2ory_A 83 GEYVIAIRGTNPVSISDWL 101 (346) T ss_dssp TEEEEEEECSCTTCHHHHT T ss_pred CEEEEEECCCCCCCHHHHH T ss_conf 9899998799858788999 No 7 >1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Probab=7.39 E-value=87 Score=10.72 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=11.2 Q ss_pred EEEEECCCCEEEECCCCCC Q ss_conf 2999405838997442567 Q gi|254781134|r 169 NLFFGDYEGTFWQGDISGS 187 (320) Q Consensus 169 ~lyfG~~dG~Vy~~e~G~s 187 (320) ...+-+.+|+|-..-.+|- T Consensus 182 d~ll~d~~g~v~E~s~sNi 200 (309) T 1iye_A 182 EGIALDVNGYISEGAGENL 200 (309) T ss_dssp EEEEECTTSBEEEETTBEE T ss_pred EEEECCCCCCEEECCCEEE T ss_conf 2430267886776473579 No 8 >1l4d_B Streptokinase; plasminogen, protein complex, hydrolase/hydrolase activator complex; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 Probab=6.61 E-value=95 Score=10.49 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=12.4 Q ss_pred EECCEEEEECCCCEEEEC Q ss_conf 204429994058389974 Q gi|254781134|r 165 VANENLFFGDYEGTFWQG 182 (320) Q Consensus 165 ~~~~~lyfG~~dG~Vy~~ 182 (320) ..++++||++.||-|--. T Consensus 86 dr~g~lyfA~~dgSV~l~ 103 (122) T 1l4d_B 86 DRNGKVYFADKDGSVTLP 103 (122) T ss_dssp ETTCCEECCCTTSEEECC T ss_pred CCCCCEEEECCCCCEECC T ss_conf 146758984689846337 No 9 >1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5 Probab=6.46 E-value=90 Score=10.63 Aligned_cols=11 Identities=18% Similarity=0.160 Sum_probs=5.0 Q ss_pred CHHEEEECCCE Q ss_conf 01134207809 Q gi|254781134|r 62 KRAIVFVKNDV 72 (320) Q Consensus 62 ~~~i~~~GgDl 72 (320) ..|+.|+|||+ T Consensus 9 ~eCLkeYGgDV 19 (68) T 1jxc_A 9 NECLKEYGGDV 19 (68) T ss_dssp SCCCCBCCSSC T ss_pred HHHHHHHCCCC T ss_conf 37999838876 No 10 >2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76 Probab=6.38 E-value=98 Score=10.42 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=16.7 Q ss_pred CCCCEEEEEECCCCCCCCEEEEEEEEEC Q ss_conf 3881899960588875624896588704 Q gi|254781134|r 30 TLGEVAVYGGDNPDDSSSFSLKAIYHIG 57 (320) Q Consensus 30 ~~g~v~v~~g~~p~~~~~~~l~~~~~~~ 57 (320) .+|+|.|+|+-.|.++++| .|.+++. T Consensus 55 ~~G~i~ItqkG~~VDp~~~--rGpiRlr 80 (85) T 2ns0_A 55 DAGEVEVTQKGAVVDPRSA--RGPIRIR 80 (85) T ss_dssp HTTSEEEEETTEECCTTTC--CSCCEEE T ss_pred HCCCEEEEECCEECCCCCC--CCCEEEE T ss_conf 7796899779985681227--7754840 Done!