Query         gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 320
No_of_seqs    163 out of 290
Neff          6.6 
Searched_HMMs 23785
Date          Wed Jun  1 01:11:02 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781134.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3daa_A D-amino acid aminotrans  18.5      38  0.0016   12.8   2.6   18  169-187   166-183 (277)
  2 2d3i_A Ovotransferrin; aluminu  13.0      49   0.002   12.2   0.8   14   63-76    196-209 (686)
  3 1h76_A Serotransferrin; iron t  12.2      53  0.0022   11.9   0.8   15   71-85    226-241 (696)
  4 3mc2_A Inhibitor of carbonic a   9.0      74  0.0031   11.1   0.6   13   63-75    199-211 (687)
  5 3csw_A BCAT, putative branched   8.5      77  0.0032   11.0   1.7   36  168-205   163-198 (285)
  6 2ory_A Lipase; alpha/beta hydr   7.6      85  0.0036   10.8   0.8   18   32-49     83-101 (346)
  7 1iye_A Branched-chain amino ac   7.4      87  0.0037   10.7   4.0   19  169-187   182-200 (309)
  8 1l4d_B Streptokinase; plasmino   6.6      95   0.004   10.5   1.6   18  165-182    86-103 (122)
  9 1jxc_A Putative trypsin inhibi   6.5      90  0.0038   10.6   0.1   11   62-72      9-19  (68)
 10 2ns0_A Hypothetical protein; r   6.4      98  0.0041   10.4   0.8   26   30-57     55-80  (85)

No 1  
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=18.55  E-value=38  Score=12.79  Aligned_cols=18  Identities=17%  Similarity=0.193  Sum_probs=10.0

Q ss_pred             EEEEECCCCEEEECCCCCC
Q ss_conf             2999405838997442567
Q gi|254781134|r  169 NLFFGDYEGTFWQGDISGS  187 (320)
Q Consensus       169 ~lyfG~~dG~Vy~~e~G~s  187 (320)
                      .+++ +.+|+|...-++|-
T Consensus       166 ~~l~-d~~g~v~Egs~sNv  183 (277)
T 3daa_A          166 EAIL-HRNNTVTEGSSSNV  183 (277)
T ss_dssp             EEEE-EETTEEEEETTBEE
T ss_pred             EEEE-ECCCEEEECCCEEE
T ss_conf             1146-03989998787069


No 2  
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=12.97  E-value=49  Score=12.17  Aligned_cols=14  Identities=21%  Similarity=0.090  Sum_probs=7.4

Q ss_pred             HHEEEECCCEEEEE
Q ss_conf             11342078099992
Q gi|254781134|r   63 RAIVFVKNDVWIAT   76 (320)
Q Consensus        63 ~~i~~~GgDl~fls   76 (320)
                      ||+.+-+||++|+-
T Consensus       196 rCL~eg~GdVAFvk  209 (686)
T 2d3i_A          196 HCLKDGKGDVAFVK  209 (686)
T ss_dssp             HHHHTTSCSEEEEE
T ss_pred             HHHHCCCCCEEEEE
T ss_conf             88754898469996


No 3  
>1h76_A Serotransferrin; iron transport, glycoprotein, metal-binding; HET: NAG; 2.15A {Sus scrofa} SCOP: c.94.1.2 c.94.1.2 PDB: 1jnf_A 2hav_A* 2hau_A* 1suv_E
Probab=12.17  E-value=53  Score=11.94  Aligned_cols=15  Identities=0%  Similarity=0.014  Sum_probs=7.9

Q ss_pred             CEEEEECCCE-EEEEE
Q ss_conf             0999926880-65210
Q gi|254781134|r   71 DVWIATNNGL-ISMKN   85 (320)
Q Consensus        71 Dl~fls~dGl-r~ls~   85 (320)
                      |--+|.+||- +||..
T Consensus       226 ~y~lLC~DGt~~pi~~  241 (696)
T 1h76_A          226 QYELLCRDNTRRPVDD  241 (696)
T ss_dssp             GEEEECTTSCEEEGGG
T ss_pred             CEEEECCCCCCCCCCC
T ss_conf             6589768998356888


No 4  
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=8.98  E-value=74  Score=11.13  Aligned_cols=13  Identities=15%  Similarity=0.064  Sum_probs=7.3

Q ss_pred             HHEEEECCCEEEE
Q ss_conf             1134207809999
Q gi|254781134|r   63 RAIVFVKNDVWIA   75 (320)
Q Consensus        63 ~~i~~~GgDl~fl   75 (320)
                      ||+.+-+||++|+
T Consensus       199 rCL~eg~GDVAFv  211 (687)
T 3mc2_A          199 KCLQDGTADVSFV  211 (687)
T ss_dssp             HHHHTTSCSEEEE
T ss_pred             HHHHCCCCCEEEE
T ss_conf             8886089647999


No 5  
>3csw_A BCAT, putative branched-chain-amino-acid aminotransferase; TM0831, structural genomics, joint center for structural genomics, JCSG; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=8.53  E-value=77  Score=11.02  Aligned_cols=36  Identities=14%  Similarity=0.134  Sum_probs=18.0

Q ss_pred             CEEEEECCCCEEEECCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             42999405838997442567577507999982576778
Q gi|254781134|r  168 ENLFFGDYEGTFWQGDISGSDNARPFIGIYLSPFHAID  205 (320)
Q Consensus       168 ~~lyfG~~dG~Vy~~e~G~sddG~~i~a~y~sp~~~fg  205 (320)
                      +...+-+.+|+|...-.+|-|-=  ....+.||...-+
T Consensus       163 ~d~illn~~g~V~Eg~~sNif~~--~~~~~~TP~~~~g  198 (285)
T 3csw_A          163 YDVILLGLNGQVCEGSFSNVFLV--KEGKLITPSLDSG  198 (285)
T ss_dssp             SEEEEECTTSBEEEESSSEEEEE--ETTEEEEECGGGT
T ss_pred             CCCEEECCCCCEEECCCEEEEEE--ECCEEEECCCCCC
T ss_conf             75088989998744375379999--8997997897678


No 6  
>2ory_A Lipase; alpha/beta hydrolase; 2.20A {Photobacterium SP}
Probab=7.56  E-value=85  Score=10.77  Aligned_cols=18  Identities=33%  Similarity=0.458  Sum_probs=12.7

Q ss_pred             CCE-EEEEECCCCCCCCEE
Q ss_conf             818-999605888756248
Q gi|254781134|r   32 GEV-AVYGGDNPDDSSSFS   49 (320)
Q Consensus        32 g~v-~v~~g~~p~~~~~~~   49 (320)
                      +++ ++|+||+|.+..+|.
T Consensus        83 ~~~VVafRGT~~~S~~dW~  101 (346)
T 2ory_A           83 GEYVIAIRGTNPVSISDWL  101 (346)
T ss_dssp             TEEEEEEECSCTTCHHHHT
T ss_pred             CEEEEEECCCCCCCHHHHH
T ss_conf             9899998799858788999


No 7  
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=7.39  E-value=87  Score=10.72  Aligned_cols=19  Identities=16%  Similarity=-0.003  Sum_probs=11.2

Q ss_pred             EEEEECCCCEEEECCCCCC
Q ss_conf             2999405838997442567
Q gi|254781134|r  169 NLFFGDYEGTFWQGDISGS  187 (320)
Q Consensus       169 ~lyfG~~dG~Vy~~e~G~s  187 (320)
                      ...+-+.+|+|-..-.+|-
T Consensus       182 d~ll~d~~g~v~E~s~sNi  200 (309)
T 1iye_A          182 EGIALDVNGYISEGAGENL  200 (309)
T ss_dssp             EEEEECTTSBEEEETTBEE
T ss_pred             EEEECCCCCCEEECCCEEE
T ss_conf             2430267886776473579


No 8  
>1l4d_B Streptokinase; plasminogen, protein complex, hydrolase/hydrolase activator complex; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1
Probab=6.61  E-value=95  Score=10.49  Aligned_cols=18  Identities=22%  Similarity=0.399  Sum_probs=12.4

Q ss_pred             EECCEEEEECCCCEEEEC
Q ss_conf             204429994058389974
Q gi|254781134|r  165 VANENLFFGDYEGTFWQG  182 (320)
Q Consensus       165 ~~~~~lyfG~~dG~Vy~~  182 (320)
                      ..++++||++.||-|--.
T Consensus        86 dr~g~lyfA~~dgSV~l~  103 (122)
T 1l4d_B           86 DRNGKVYFADKDGSVTLP  103 (122)
T ss_dssp             ETTCCEECCCTTSEEECC
T ss_pred             CCCCCEEEECCCCCEECC
T ss_conf             146758984689846337


No 9  
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5
Probab=6.46  E-value=90  Score=10.63  Aligned_cols=11  Identities=18%  Similarity=0.160  Sum_probs=5.0

Q ss_pred             CHHEEEECCCE
Q ss_conf             01134207809
Q gi|254781134|r   62 KRAIVFVKNDV   72 (320)
Q Consensus        62 ~~~i~~~GgDl   72 (320)
                      ..|+.|+|||+
T Consensus         9 ~eCLkeYGgDV   19 (68)
T 1jxc_A            9 NECLKEYGGDV   19 (68)
T ss_dssp             SCCCCBCCSSC
T ss_pred             HHHHHHHCCCC
T ss_conf             37999838876


No 10 
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=6.38  E-value=98  Score=10.42  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=16.7

Q ss_pred             CCCCEEEEEECCCCCCCCEEEEEEEEEC
Q ss_conf             3881899960588875624896588704
Q gi|254781134|r   30 TLGEVAVYGGDNPDDSSSFSLKAIYHIG   57 (320)
Q Consensus        30 ~~g~v~v~~g~~p~~~~~~~l~~~~~~~   57 (320)
                      .+|+|.|+|+-.|.++++|  .|.+++.
T Consensus        55 ~~G~i~ItqkG~~VDp~~~--rGpiRlr   80 (85)
T 2ns0_A           55 DAGEVEVTQKGAVVDPRSA--RGPIRIR   80 (85)
T ss_dssp             HTTSEEEEETTEECCTTTC--CSCCEEE
T ss_pred             HCCCEEEEECCEECCCCCC--CCCEEEE
T ss_conf             7796899779985681227--7754840


Done!