Query         gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 320
No_of_seqs    163 out of 290
Neff          6.6 
Searched_HMMs 13730
Date          Wed Jun  1 11:34:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781134.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1daaa_ e.17.1.1 (A:) D-aminoa  12.9      31  0.0023   11.9   2.5   35  168-205   165-199 (277)
  2 d1uj4a1 c.124.1.4 (A:3-131,A:2  11.4      35  0.0025   11.6   1.0   30   57-86     66-95  (151)
  3 d1gv8a_ c.94.1.2 (A:) Ovotrans   8.7      44  0.0032   11.1   0.8   10   65-74    108-117 (159)
  4 d2ns0a1 a.4.5.76 (A:1-85) Hypo   7.8      48  0.0035   10.8   0.8   26   30-57     55-80  (85)
  5 d1udxa1 b.117.1.1 (A:1-156) Ob   6.4      57  0.0041   10.4   1.4   50   35-86      9-58  (156)
  6 d1so9a_ b.146.1.1 (A:) Cytochr   6.0      47  0.0035   10.9  -0.3   46  259-304    59-104 (131)
  7 d1lura_ b.30.5.4 (A:) Aldose 1   5.6      63  0.0046   10.1   1.8   90  143-236    63-152 (329)
  8 d1l4db_ d.15.5.1 (B:) Streptok   5.3      66  0.0048   10.0   1.6   17  163-179    84-100 (122)
  9 d1oh1a_ b.61.2.2 (A:) Staphost   5.3      66  0.0048   10.0   0.2   28  124-152     4-31  (109)
 10 d2fug71 d.82.2.2 (7:3-129) NAD   4.9      62  0.0045   10.2  -0.3   23  178-200    38-72  (127)

No 1  
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]}
Probab=12.90  E-value=31  Score=11.93  Aligned_cols=35  Identities=14%  Similarity=-0.053  Sum_probs=15.1

Q ss_pred             CEEEEECCCCEEEECCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             42999405838997442567577507999982576778
Q gi|254781134|r  168 ENLFFGDYEGTFWQGDISGSDNARPFIGIYLSPFHAID  205 (320)
Q Consensus       168 ~~lyfG~~dG~Vy~~e~G~sddG~~i~a~y~sp~~~fg  205 (320)
                      +.+++ +.+|+|-..-.+|-|-  -......||...-+
T Consensus       165 d~~l~-~~~g~v~E~~~sNvf~--vk~~~~~tPp~~~g  199 (277)
T d1daaa_         165 YEAIL-HRNNTVTEGSSSNVFG--IKDGILYTHPANNM  199 (277)
T ss_dssp             SEEEE-EETTEEEEETTBEEEE--EETTEEEECCSSTT
T ss_pred             CCEEE-ECCCCCEECCCCEEEE--EECCEEEECCCCCC
T ss_conf             40254-0488420036415999--98999994677445


No 2  
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]}
Probab=11.36  E-value=35  Score=11.64  Aligned_cols=30  Identities=7%  Similarity=-0.080  Sum_probs=23.7

Q ss_pred             CCCCCCHHEEEECCCEEEEECCCEEEEEEE
Q ss_conf             461370113420780999926880652101
Q gi|254781134|r   57 GRPLGKRAIVFVKNDVWIATNNGLISMKNI   86 (320)
Q Consensus        57 ~~~i~~~~i~~~GgDl~fls~dGlr~ls~t   86 (320)
                      .|+...+.+.++.-|+.|++.||+.+=.+.
T Consensus        66 ~g~~~~~~l~~~~~D~aF~g~~gvd~~~g~   95 (151)
T d1uj4a1          66 REGIPLVDLPPEGVDLAIDGADEIAPGLAL   95 (151)
T ss_dssp             HTTCCBCCCCTTCEEEEEECCSEEEGGGEE
T ss_pred             CCCCCCCCCCCCEECEEEECCCCCCCCCCC
T ss_conf             277422122343005899716612577671


No 3  
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]}
Probab=8.65  E-value=44  Score=11.05  Aligned_cols=10  Identities=30%  Similarity=0.082  Sum_probs=3.2

Q ss_pred             EEEECCCEEE
Q ss_conf             3420780999
Q gi|254781134|r   65 IVFVKNDVWI   74 (320)
Q Consensus        65 i~~~GgDl~f   74 (320)
                      +++=+||++|
T Consensus       108 L~eg~GDVAF  117 (159)
T d1gv8a_         108 LKDGKGDVAF  117 (159)
T ss_dssp             HHTTSCSEEE
T ss_pred             HHHCCCCEEE
T ss_conf             5427963699


No 4  
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=7.76  E-value=48  Score=10.82  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=17.0

Q ss_pred             CCCCEEEEEECCCCCCCCEEEEEEEEEC
Q ss_conf             3881899960588875624896588704
Q gi|254781134|r   30 TLGEVAVYGGDNPDDSSSFSLKAIYHIG   57 (320)
Q Consensus        30 ~~g~v~v~~g~~p~~~~~~~l~~~~~~~   57 (320)
                      .+|+|.|+|+-.|.++++|  .|.+++.
T Consensus        55 ~~G~i~I~qkG~~VDp~~~--rGpiRlr   80 (85)
T d2ns0a1          55 DAGEVEVTQKGAVVDPRSA--RGPIRIR   80 (85)
T ss_dssp             HTTSEEEEETTEECCTTTC--CSCCEEE
T ss_pred             HCCCEEEEECCEECCCCCC--CCCEEEE
T ss_conf             7796899779964681217--8754840


No 5  
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.40  E-value=57  Score=10.42  Aligned_cols=50  Identities=20%  Similarity=0.280  Sum_probs=25.3

Q ss_pred             EEEEECCCCCCCCEEEEEEEEECCCCCCHHEEEECCCEEEEECCCEEEEEEE
Q ss_conf             9996058887562489658870461370113420780999926880652101
Q gi|254781134|r   35 AVYGGDNPDDSSSFSLKAIYHIGRPLGKRAIVFVKNDVWIATNNGLISMKNI   86 (320)
Q Consensus        35 ~v~~g~~p~~~~~~~l~~~~~~~~~i~~~~i~~~GgDl~fls~dGlr~ls~t   86 (320)
                      .|-.|.-.+-...|.-..-...++|=+.+-  --|||++|.++..+.+|+..
T Consensus         9 ~v~~G~GG~G~~sf~rek~~~~ggp~GG~G--G~GG~Vi~~ad~~l~tL~~~   58 (156)
T d1udxa1           9 TVAAGRGGDGAVSFRREKFVPKGGPDGGDG--GRGGSVYLRARGSVDSLSRL   58 (156)
T ss_dssp             EEECCCCCCCCCCBCCBTTBSCCCBCCCCC--CCCCCEEEEECTTCCSSTTS
T ss_pred             EEEECCCCCCCEEEECCCCCCCCCCCCCCC--CCCCEEEEEECCHHHHHHHH
T ss_conf             999638979753141465466789988888--86631999977326467763


No 6  
>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}
Probab=6.04  E-value=47  Score=10.86  Aligned_cols=46  Identities=11%  Similarity=0.203  Sum_probs=17.5

Q ss_pred             ECCEEECCEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCC
Q ss_conf             4415523177247310034310123443436569999999993188
Q gi|254781134|r  259 WDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVIVSSG  304 (320)
Q Consensus       259 wg~a~w~~a~~g~~~~~~~~~~~~~~q~v~GsG~~vav~i~~~s~g  304 (320)
                      -|.|+|+.+.--++.+..+-.=+=|.++.-..|..+-+-++..++-
T Consensus        59 ~g~A~~nV~P~~a~~Yf~KieCFCF~~Q~L~pgE~~~mpv~F~IDP  104 (131)
T d1so9a_          59 TGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDP  104 (131)
T ss_dssp             ECCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCG
T ss_pred             EEEEEEEECHHHHHHHEECCCEEEEEEEEECCCCEEEEEEEEEECC
T ss_conf             9999800587997644054728877516978998898749999998


No 7  
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=5.60  E-value=63  Score=10.15  Aligned_cols=90  Identities=9%  Similarity=-0.040  Sum_probs=0.0

Q ss_pred             EEECCCCCEEEEEECCCEEEEEEECCEEEEECCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             76212353037863551279982044299940583899744256757750799998257677884112699999998998
Q gi|254781134|r  143 VMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFWQGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQ  222 (320)
Q Consensus       143 v~~~~~~gaws~~~g~~a~~~~~~~~~lyfG~~dG~Vy~~e~G~sddG~~i~a~y~sp~~~fgdps~~rK~~~~~~~~~~  222 (320)
                      +.|-++.+.| ++-|-.-.--.......+||+..|+-.+...--..+...+...+.++..+.|=| +  ...-.++-.+.
T Consensus        63 ~aNRI~~g~f-~~~G~~y~L~~N~~~n~lHGg~~g~~~~~w~v~~~~~~~v~~~~~~~~~~~GyP-g--~l~~~vtY~L~  138 (329)
T d1lura_          63 VANRIKNSTL-HFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLP-G--DAKIDVTYTVN  138 (329)
T ss_dssp             BCSEEGGGEE-EETTEEEECCCSBTTBEETTCTTSGGGSBCEEEEEETTEEEEEEEEEHHHHSSS-S--EEEEEEEEEEC
T ss_pred             CCCEEECCEE-EECCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCC-C--CEEEEEEEEEC
T ss_conf             0770648869-899999882367788634667798436777788605760699998248766765-4--26899999982


Q ss_pred             ECCCCCEEEEEEEE
Q ss_conf             17862147999983
Q gi|254781134|r  223 AYQRPYLKLFARAN  236 (320)
Q Consensus       223 ~~g~~~~~l~~~yD  236 (320)
                      .++...+.+...-|
T Consensus       139 ~~~~l~i~~~a~~d  152 (329)
T d1lura_         139 DRNQLIIEHHATCD  152 (329)
T ss_dssp             TTSEEEEEEEEECS
T ss_pred             CCCEEEEEEEEEEC
T ss_conf             48789999788606


No 8  
>d1l4db_ d.15.5.1 (B:) Streptokinase {Streptococcus equisimilis [TaxId: 119602]}
Probab=5.30  E-value=66  Score=10.04  Aligned_cols=17  Identities=24%  Similarity=0.540  Sum_probs=0.0

Q ss_pred             EEEECCEEEEECCCCEE
Q ss_conf             98204429994058389
Q gi|254781134|r  163 YVVANENLFFGDYEGTF  179 (320)
Q Consensus       163 ~~~~~~~lyfG~~dG~V  179 (320)
                      .+..++++||++.||-|
T Consensus        84 itdr~~~lyfA~~d~SV  100 (122)
T d1l4db_          84 ITDRNGKVYFADKDGSV  100 (122)
T ss_dssp             EEETTCCEECCCTTSEE
T ss_pred             EECCCCCEEEECCCCCE
T ss_conf             23156758986588856


No 9  
>d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726) {Staphylococcus aureus [TaxId: 1280]}
Probab=5.29  E-value=66  Score=10.03  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             CCEEEEEECCCCCCCEEEEEEECCCCCEE
Q ss_conf             82899982688763101467621235303
Q gi|254781134|r  124 RNMLLISCPKNSLLSDKTFVMNVAHNNRW  152 (320)
Q Consensus       124 ~~~~lf~~~~~~~~~~~~~v~~~~~~gaw  152 (320)
                      +||-||+..+.......++.++++ .|.|
T Consensus         4 ~~~~l~~i~~~~~~~~~kywlhil-eG~W   31 (109)
T d1oh1a_           4 EQFELFSIDKFKCNSEAKYYLNII-EGEW   31 (109)
T ss_dssp             CSCEEEEECCCCCSSCCHHHHHHT-BEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHH-HCEE
T ss_conf             207999631566460466444244-0314


No 10 
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=4.95  E-value=62  Score=10.20  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=0.0

Q ss_pred             EEEECC-----------CCCCC-CCCEEEEEEEEC
Q ss_conf             899744-----------25675-775079999825
Q gi|254781134|r  178 TFWQGD-----------ISGSD-NARPFIGIYLSP  200 (320)
Q Consensus       178 ~Vy~~e-----------~G~sd-dG~~i~a~y~sp  200 (320)
                      |+|+||           ..-++ +|+|+...+.||
T Consensus        38 yIYRMERpYdLPTTvMs~sls~~~G~p~l~a~vSP   72 (127)
T d2fug71          38 FIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSP   72 (127)
T ss_dssp             HHTCCSSCCCCSCSEEEEEEECSSCCEEEEEEECC
T ss_pred             HHHHCCCCCCCCHHHEEEEECCCCCCEEEEEECCC
T ss_conf             88850665568700157762168998778873385


Done!