RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781134|ref|YP_003065547.1| hypothetical protein
CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62]
         (320 letters)



>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD,
           ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus
           helveticus} (A:)
          Length = 167

 Score = 25.7 bits (56), Expect = 7.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 34  VAVYGGDNPDDSSSFSLKAIYHIGRPL 60
           V +Y  D  DD S+F +  +  + +P+
Sbjct: 86  VFLYDMDQLDDGSAFXIGFMRAMHKPV 112


>1yvl_A Signal transducer and activator of transcription
           1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo
           sapiens} (A:462-484,A:547-579)
          Length = 56

 Score = 25.5 bits (56), Expect = 8.9
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 4/30 (13%)

Query: 113 PTGWSMILWEKRNMLLISCPKNSLLSDKTF 142
           P+GW+ ILW     +L++ P+N L++DK F
Sbjct: 4   PSGWASILWYN---MLVAEPRN-LINDKNF 29


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0320    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,506,719
Number of extensions: 109966
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 9
Length of query: 320
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 231
Effective length of database: 1,947,404
Effective search space: 449850324
Effective search space used: 449850324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)