RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781134|ref|YP_003065547.1| hypothetical protein
CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62]
         (320 letters)



>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
           thermophilus [TaxId: 274]}
          Length = 125

 Score = 28.3 bits (63), Expect = 1.0
 Identities = 10/62 (16%), Positives = 21/62 (33%)

Query: 48  FSLKAIYHIGRPLGKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLPLSWPIQEQWEQ 107
            +L  IY IG+   K A+     +      +   +    L +  +    L   ++ +   
Sbjct: 16  VALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAA 75

Query: 108 AI 109
            I
Sbjct: 76  NI 77


>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 361

 Score = 26.7 bits (59), Expect = 2.4
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 37  YGGDNPDDSSSFSLKAIYHIGRPLGKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLP 96
            G  +           I  IG        + V N+ +    + L+ + + ++ E+ T   
Sbjct: 140 LGEFSLRGKELRE-NGINRIGN-------LLVPNENYCKFEDWLMPILDQMVMEQNTE-G 190

Query: 97  LSWPIQEQWEQAIMVAPTGWSMILWEKRNMLLISCP 132
           + W   +   +         S+  W ++N + +  P
Sbjct: 191 VKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSP 226


>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
           3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 311

 Score = 26.8 bits (58), Expect = 2.6
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 18  GDGLSTLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPLGKRAIVFVKNDVWIATN 77
           G G   L +F +  G   V G     D S    +A+  I     +  I  +K  +     
Sbjct: 43  GCGTGILSMFAAKAGAKKVLG----VDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL 98

Query: 78  NGLISMKNILLQEEKTNLPLSWPIQEQWEQAI--MVAPTGWSMILWEKRNMLLISCPKNS 135
              +   ++++ E      L   + +    A    +A  G         +++ +S     
Sbjct: 99  P--VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVN-- 154

Query: 136 LLSDKTFVMNVAHNNRWSSFHNWFTQSYVV 165
             +D+    +  +  + S          VV
Sbjct: 155 KHADRIAFWDDVYGFKMSCMKKAVIPEAVV 184


>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic
           pyrophosphatase (family II) {Bacillus subtilis [TaxId:
           1423]}
          Length = 187

 Score = 25.5 bits (55), Expect = 5.6
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 34  VAVYGGDNPDDSSSFSLKAIYHIGRPLGKRAIVFVKNDVWIATNNGLISMKNILLQEEKT 93
           + ++G  NPD  +  S  A   +   LG  A       V     NG         ++E  
Sbjct: 3   ILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQV-----NGETQYALDYFKQESP 57

Query: 94  NLPLSWPIQEQWEQAIMVAPTGWSMILWEKRNMLLI 129
            L  +   +      +       S+   E+  +L +
Sbjct: 58  RLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEV 93


>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase
           {Cow (Bos taurus), alpha2 [TaxId: 9913]}
          Length = 212

 Score = 25.3 bits (54), Expect = 7.2
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 143 VMNVAHNNRWSSFHNWF-TQSYVVANENLFFGD 174
             ++  ++RW S HN F         + LF GD
Sbjct: 10  AEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGD 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,238,668
Number of extensions: 56971
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 6
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)