BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781134|ref|YP_003065547.1| hypothetical protein
CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62]
         (320 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 320

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MQAGGSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPL 60
           MQAGGSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPL
Sbjct: 1   MQAGGSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPL 60

Query: 61  GKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLPLSWPIQEQWEQAIMVAPTGWSMIL 120
           GKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLPLSWPIQEQWEQAIMVAPTGWSMIL
Sbjct: 61  GKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLPLSWPIQEQWEQAIMVAPTGWSMIL 120

Query: 121 WEKRNMLLISCPKNSLLSDKTFVMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFW 180
           WEKRNMLLISCPKNSLLSDKTFVMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFW
Sbjct: 121 WEKRNMLLISCPKNSLLSDKTFVMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFW 180

Query: 181 QGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQAYQRPYLKLFARANYDHS 240
           QGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQAYQRPYLKLFARANYDHS
Sbjct: 181 QGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQAYQRPYLKLFARANYDHS 240

Query: 241 YPEFSKETISNNPMDNGIWDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVI 300
           YPEFSKETISNNPMDNGIWDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVI
Sbjct: 241 YPEFSKETISNNPMDNGIWDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVI 300

Query: 301 VSSGKSINDIQINNAKLLVE 320
           VSSGKSINDIQINNAKLLVE
Sbjct: 301 VSSGKSINDIQINNAKLLVE 320


>gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 114

 Score = 29.6 bits (65), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 47 SFSLKAIYHIGRPLGKRAI--VFVKNDVWIATNNGLISMKNILLQEEKTNL 95
          S SL +I H   P  K+A+  +F  + VW+     L+S  N L QE K NL
Sbjct: 27 SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77


>gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 431

 Score = 25.4 bits (54), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 185 SGSDNAR---PFIGIYLSPFHAIDPRLGFQR 212
           SG+ N+R   P I +  S FH I PR+ FQ 
Sbjct: 379 SGTYNSRLLIPEIMVNGSQFHIIRPRMTFQE 409


>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 692

 Score = 25.0 bits (53), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 3   AGGSLPAGFSWSTESGDGLSTLCVF--LSTLGEVAVYGGDN--PDDSSSFSLKAI 53
           A G + AGFS    SGD +  L VF  L T+  + +  G     +  + F+L AI
Sbjct: 104 AAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAI 158


>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 404

 Score = 23.9 bits (50), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 276 TKKKLFQ-FCQNVVAYGNCLAVGCVIVSSGKSINDIQINNAKLLV 319
           T  +L++ F    +     +   C I+ S KS+ND   NN+K L+
Sbjct: 361 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDF-FNNSKFLI 404


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.135    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,623
Number of Sequences: 1233
Number of extensions: 9129
Number of successful extensions: 25
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 320
length of database: 328,796
effective HSP length: 74
effective length of query: 246
effective length of database: 237,554
effective search space: 58438284
effective search space used: 58438284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)