BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62] (320 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/320 (100%), Positives = 320/320 (100%) Query: 1 MQAGGSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPL 60 MQAGGSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPL Sbjct: 1 MQAGGSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPL 60 Query: 61 GKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLPLSWPIQEQWEQAIMVAPTGWSMIL 120 GKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLPLSWPIQEQWEQAIMVAPTGWSMIL Sbjct: 61 GKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLPLSWPIQEQWEQAIMVAPTGWSMIL 120 Query: 121 WEKRNMLLISCPKNSLLSDKTFVMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFW 180 WEKRNMLLISCPKNSLLSDKTFVMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFW Sbjct: 121 WEKRNMLLISCPKNSLLSDKTFVMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFW 180 Query: 181 QGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQAYQRPYLKLFARANYDHS 240 QGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQAYQRPYLKLFARANYDHS Sbjct: 181 QGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQAYQRPYLKLFARANYDHS 240 Query: 241 YPEFSKETISNNPMDNGIWDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVI 300 YPEFSKETISNNPMDNGIWDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVI Sbjct: 241 YPEFSKETISNNPMDNGIWDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVI 300 Query: 301 VSSGKSINDIQINNAKLLVE 320 VSSGKSINDIQINNAKLLVE Sbjct: 301 VSSGKSINDIQINNAKLLVE 320 >gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] Length = 114 Score = 29.6 bits (65), Expect = 0.071, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 47 SFSLKAIYHIGRPLGKRAI--VFVKNDVWIATNNGLISMKNILLQEEKTNL 95 S SL +I H P K+A+ +F + VW+ L+S N L QE K NL Sbjct: 27 SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 >gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Query: 185 SGSDNAR---PFIGIYLSPFHAIDPRLGFQR 212 SG+ N+R P I + S FH I PR+ FQ Sbjct: 379 SGTYNSRLLIPEIMVNGSQFHIIRPRMTFQE 409 >gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] Length = 692 Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 3 AGGSLPAGFSWSTESGDGLSTLCVF--LSTLGEVAVYGGDN--PDDSSSFSLKAI 53 A G + AGFS SGD + L VF L T+ + + G + + F+L AI Sbjct: 104 AAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAI 158 >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 276 TKKKLFQ-FCQNVVAYGNCLAVGCVIVSSGKSINDIQINNAKLLV 319 T +L++ F + + C I+ S KS+ND NN+K L+ Sbjct: 361 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDF-FNNSKFLI 404 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.135 0.432 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,623 Number of Sequences: 1233 Number of extensions: 9129 Number of successful extensions: 25 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 6 length of query: 320 length of database: 328,796 effective HSP length: 74 effective length of query: 246 effective length of database: 237,554 effective search space: 58438284 effective search space used: 58438284 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)