Query gi|254781135|ref|YP_003065548.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 83 No_of_seqs 19 out of 21 Neff 3.1 Searched_HMMs 33803 Date Wed Jun 1 22:45:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781135.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1pqh_A Aspartate 1-decarboxyl 32.4 25 0.00074 16.9 1.9 32 2-33 68-99 (143) 2 >1vc3_B L-aspartate-alpha-deca 27.7 22 0.00065 17.2 0.9 32 2-33 27-58 (96) 3 >3hfq_A Uncharacterized protei 24.4 56 0.0016 14.9 3.8 23 10-32 58-80 (97) 4 >2c45_A Aspartate 1-decarboxyl 23.5 37 0.0011 16.0 1.4 32 2-33 51-82 (139) 5 >3faw_A Reticulocyte binding p 20.1 69 0.002 14.4 4.4 31 2-32 57-90 (204) 6 >2wr1_A Hemagglutinin; glycopr 18.5 60 0.0018 14.8 1.6 44 25-73 24-67 (172) 7 >1ej6_A Lambda2; icosahedral, 13.1 34 0.001 16.1 -0.7 16 9-24 170-185 (262) 8 >3ku3_A Hemagglutinin HA1 chai 12.3 1E+02 0.003 13.5 1.4 43 26-73 25-67 (173) 9 >2kd2_A FAS apoptotic inhibito 12.3 85 0.0025 13.9 1.1 11 68-78 27-37 (43) 10 >2qpw_A PR domain zinc finger 10.1 93 0.0028 13.7 0.7 17 14-30 59-75 (75) No 1 >>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} (A:) Probab=32.41 E-value=25 Score=16.85 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=27.3 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCEEECC Q ss_conf 77708899972799609999518785225648 Q gi|254781135|r 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG 33 (83) Q Consensus 2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG 33 (83) .|.||+..-+.-+-||=.+++||+-|++.--| T Consensus 68 NG~Rf~TYvI~g~~GSg~I~lNGAAArl~~~G 99 (143) T 1pqh_A 68 NGKRFSTYAIAAERGSRIISVNGAAAHXASVG 99 (143) T ss_dssp TCCEEEEEEEEECTTCCCEECCGGGGGTCCTT T ss_pred CCCEEEEEEEECCCCCCEEEECCHHHHCCCCC T ss_conf 99779999996358887587468888547999 No 2 >>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B (B:) Probab=27.68 E-value=22 Score=17.19 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=26.4 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCEEECC Q ss_conf 77708899972799609999518785225648 Q gi|254781135|r 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG 33 (83) Q Consensus 2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG 33 (83) .|.||+..-+.-+-||=.+|+||+-|++.--| T Consensus 27 NG~Rf~TY~I~G~~GSg~I~lNGAAArl~~~G 58 (96) T 1vc3_B 27 NGARLTTYALPGERGSGVIGINGAAAHLVKPG 58 (96) T ss_dssp TCCEEEEECEEECTTTTCEEEEGGGGGTCCTT T ss_pred CCCEEEEEEEECCCCCCEEEECCHHHEECCCC T ss_conf 99489879996367668798558564235999 No 3 >>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} (A:89-185) Probab=24.44 E-value=56 Score=14.94 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=16.8 Q ss_pred EEECCCCEEEEEECCCCCCEEEC Q ss_conf 97279960999951878522564 Q gi|254781135|r 10 QYTTPDKTFLIALNGQDERQIYN 32 (83) Q Consensus 10 q~tT~Gg~fL~~~NG~D~~~~yn 32 (83) -..+|.|.|++.-+|.|..++|. T Consensus 58 v~~~p~g~~~v~dlG~D~I~~f~ 80 (97) T 3hfq_A 58 TDLTPDNRLAVIDLGSDKVYVYN 80 (97) T ss_dssp EEECTTSCEEEEETTTTEEEEEE T ss_pred EEECCCCEEEEECCCCCCEEEEE T ss_conf 98045426999658998367898 No 4 >>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis} (A:) Probab=23.54 E-value=37 Score=15.96 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=26.2 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCEEECC Q ss_conf 77708899972799609999518785225648 Q gi|254781135|r 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG 33 (83) Q Consensus 2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG 33 (83) .|.||+..-+.-+-||=.+++||+-|++.--| T Consensus 51 NG~Rf~TYvI~g~~GSg~I~lNGAAAr~~~~G 82 (139) T 2c45_A 51 NGARLVTYAITGERGSGVIGINGAAAHLVHPG 82 (139) T ss_dssp TCCEEEECEEEECTTTTCEEEESSTTTTSCTT T ss_pred CCCEEEEEEEECCCCCCEEEECCHHHEECCCC T ss_conf 99488878986578974487548344034889 No 5 >>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* (A:674-877) Probab=20.06 E-value=69 Score=14.43 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=24.1 Q ss_pred CCCEEEEEEEEC---CCCEEEEEECCCCCCEEEC Q ss_conf 777088999727---9960999951878522564 Q gi|254781135|r 2 KSGEWVTFQYTT---PDKTFLIALNGQDERQIYN 32 (83) Q Consensus 2 s~g~W~~vq~tT---~Gg~fL~~~NG~D~~~~yn 32 (83) ...+|..+-|.- .|..+|+++|..+.++.|. T Consensus 57 ~~~~~~v~a~~~~~~~~~~~lvv~N~~~~~~~~~ 90 (204) T 3faw_A 57 IKEKDLVIAYQTIDSKGDIYAVFVNADSKARNVL 90 (204) T ss_dssp CCSEESEEEEEEECTTCCEEEEEEECSSSCEEEE T ss_pred CCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEE T ss_conf 6778808999998899998999990899728998 No 6 >>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* (A:103-274) Probab=18.51 E-value=60 Score=14.78 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=29.5 Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCC Q ss_conf 7852256486424644456545421100135541014311568662487 Q gi|254781135|r 25 QDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDS 73 (83) Q Consensus 25 ~D~~~~ynGTtWt~~~~~~~~a~~t~~~~~~ls~~w~fkNRlwFiq~~T 73 (83) -.--++|.+++|+.....|++++-.-. +.--+|+|-.|.++++- T Consensus 24 ~er~~ifp~~~W~~v~~~G~S~AC~~~-----~~~SFyr~l~Wl~~k~~ 67 (172) T 2wr1_A 24 FEKVKILPRDQWTQHTTTGGSRACAVL-----DNPSFFRNMVWLTKKGS 67 (172) T ss_dssp EEEEECSCGGGCTTSBCCCCEEEEEET-----TEEECCTTEEECBCBTT T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHCCC T ss_conf 013783577766664169865006689-----97668876688751688 No 7 >>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} (A:434-695) Probab=13.14 E-value=34 Score=16.10 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.7 Q ss_pred EEEECCCCEEEEEECC Q ss_conf 9972799609999518 Q gi|254781135|r 9 FQYTTPDKTFLIALNG 24 (83) Q Consensus 9 vq~tT~Gg~fL~~~NG 24 (83) .|.|++||++..-||= T Consensus 170 l~~T~~GG~~V~KvNF 185 (262) T 1ej6_A 170 MHATAPGGSFVVKINF 185 (262) T ss_dssp HHHEEEEEEEEEEESS T ss_pred HHHCCCCCEEEEEECC T ss_conf 8541478438999558 No 8 >>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, envelope protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* (A:90-262) Probab=12.31 E-value=1e+02 Score=13.51 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=28.1 Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCC Q ss_conf 852256486424644456545421100135541014311568662487 Q gi|254781135|r 26 DERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDS 73 (83) Q Consensus 26 D~~~~ynGTtWt~~~~~~~~a~~t~~~~~~ls~~w~fkNRlwFiq~~T 73 (83) +--++|..++|..+...|++++-.-. +---+|+|-.|.++++- T Consensus 25 er~~i~~~~~w~~v~~~G~S~AC~~~-----g~~SFyr~l~Wl~~k~~ 67 (173) T 3ku3_A 25 EKVKILPKDRWTQHTTTGGSRACAVS-----GNPSFFRNMVWLTEKGS 67 (173) T ss_dssp EEECCSCGGGCTTSBCCCCEEEEEET-----TEEECCTTEEECBCBTT T ss_pred EEEEECCCCCCCCEECCCCCEECCCC-----CCCHHHHHHHHHHHCCC T ss_conf 45883587643565359956422579-----96578886678753579 No 9 >>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} (A:1-43) Probab=12.29 E-value=85 Score=13.93 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=8.7 Q ss_pred EEECCCEEEEE Q ss_conf 66248731789 Q gi|254781135|r 68 YIASDSMDAWT 78 (83) Q Consensus 68 Fiq~~TL~Aw~ 78 (83) -++++||+.|. T Consensus 27 VLEKdTmdVW~ 37 (43) T 2kd2_A 27 VLEKDTMDVWC 37 (43) T ss_dssp EEETTTTEEEE T ss_pred EEECCCEEEEE T ss_conf 99626344578 No 10 >>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* (A:1-54,A:129-149) Probab=10.12 E-value=93 Score=13.70 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=12.9 Q ss_pred CCCEEEEEECCCCCCEE Q ss_conf 99609999518785225 Q gi|254781135|r 14 PDKTFLIALNGQDERQI 30 (83) Q Consensus 14 ~Gg~fL~~~NG~D~~~~ 30 (83) ||-..|+--||.|-|-+ T Consensus 59 pgeellvwyngednp~i 75 (75) T 2qpw_A 59 PGEELLVWYNGEDNPEI 75 (75) T ss_dssp TTCBCEECCCCCCCCCC T ss_pred CCCEEEEECCCCCCCCC T ss_conf 99999985587545669 Done!