Query         gi|254781135|ref|YP_003065548.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 83
No_of_seqs    19 out of 21
Neff          3.1 
Searched_HMMs 33803
Date          Wed Jun  1 22:45:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781135.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1pqh_A Aspartate 1-decarboxyl  32.4      25 0.00074   16.9   1.9   32    2-33     68-99  (143)
  2 >1vc3_B L-aspartate-alpha-deca  27.7      22 0.00065   17.2   0.9   32    2-33     27-58  (96)
  3 >3hfq_A Uncharacterized protei  24.4      56  0.0016   14.9   3.8   23   10-32     58-80  (97)
  4 >2c45_A Aspartate 1-decarboxyl  23.5      37  0.0011   16.0   1.4   32    2-33     51-82  (139)
  5 >3faw_A Reticulocyte binding p  20.1      69   0.002   14.4   4.4   31    2-32     57-90  (204)
  6 >2wr1_A Hemagglutinin; glycopr  18.5      60  0.0018   14.8   1.6   44   25-73     24-67  (172)
  7 >1ej6_A Lambda2; icosahedral,   13.1      34   0.001   16.1  -0.7   16    9-24    170-185 (262)
  8 >3ku3_A Hemagglutinin HA1 chai  12.3   1E+02   0.003   13.5   1.4   43   26-73     25-67  (173)
  9 >2kd2_A FAS apoptotic inhibito  12.3      85  0.0025   13.9   1.1   11   68-78     27-37  (43)
 10 >2qpw_A PR domain zinc finger   10.1      93  0.0028   13.7   0.7   17   14-30     59-75  (75)

No 1  
>>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} (A:)
Probab=32.41  E-value=25  Score=16.85  Aligned_cols=32  Identities=16%  Similarity=0.307  Sum_probs=27.3

Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCEEECC
Q ss_conf             77708899972799609999518785225648
Q gi|254781135|r    2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG   33 (83)
Q Consensus         2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG   33 (83)
                      .|.||+..-+.-+-||=.+++||+-|++.--|
T Consensus        68 NG~Rf~TYvI~g~~GSg~I~lNGAAArl~~~G   99 (143)
T 1pqh_A           68 NGKRFSTYAIAAERGSRIISVNGAAAHXASVG   99 (143)
T ss_dssp             TCCEEEEEEEEECTTCCCEECCGGGGGTCCTT
T ss_pred             CCCEEEEEEEECCCCCCEEEECCHHHHCCCCC
T ss_conf             99779999996358887587468888547999


No 2  
>>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B (B:)
Probab=27.68  E-value=22  Score=17.19  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=26.4

Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCEEECC
Q ss_conf             77708899972799609999518785225648
Q gi|254781135|r    2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG   33 (83)
Q Consensus         2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG   33 (83)
                      .|.||+..-+.-+-||=.+|+||+-|++.--|
T Consensus        27 NG~Rf~TY~I~G~~GSg~I~lNGAAArl~~~G   58 (96)
T 1vc3_B           27 NGARLTTYALPGERGSGVIGINGAAAHLVKPG   58 (96)
T ss_dssp             TCCEEEEECEEECTTTTCEEEEGGGGGTCCTT
T ss_pred             CCCEEEEEEEECCCCCCEEEECCHHHEECCCC
T ss_conf             99489879996367668798558564235999


No 3  
>>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} (A:89-185)
Probab=24.44  E-value=56  Score=14.94  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=16.8

Q ss_pred             EEECCCCEEEEEECCCCCCEEEC
Q ss_conf             97279960999951878522564
Q gi|254781135|r   10 QYTTPDKTFLIALNGQDERQIYN   32 (83)
Q Consensus        10 q~tT~Gg~fL~~~NG~D~~~~yn   32 (83)
                      -..+|.|.|++.-+|.|..++|.
T Consensus        58 v~~~p~g~~~v~dlG~D~I~~f~   80 (97)
T 3hfq_A           58 TDLTPDNRLAVIDLGSDKVYVYN   80 (97)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEE
T ss_pred             EEECCCCEEEEECCCCCCEEEEE
T ss_conf             98045426999658998367898


No 4  
>>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis} (A:)
Probab=23.54  E-value=37  Score=15.96  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=26.2

Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCEEECC
Q ss_conf             77708899972799609999518785225648
Q gi|254781135|r    2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG   33 (83)
Q Consensus         2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG   33 (83)
                      .|.||+..-+.-+-||=.+++||+-|++.--|
T Consensus        51 NG~Rf~TYvI~g~~GSg~I~lNGAAAr~~~~G   82 (139)
T 2c45_A           51 NGARLVTYAITGERGSGVIGINGAAAHLVHPG   82 (139)
T ss_dssp             TCCEEEECEEEECTTTTCEEEESSTTTTSCTT
T ss_pred             CCCEEEEEEEECCCCCCEEEECCHHHEECCCC
T ss_conf             99488878986578974487548344034889


No 5  
>>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* (A:674-877)
Probab=20.06  E-value=69  Score=14.43  Aligned_cols=31  Identities=10%  Similarity=0.141  Sum_probs=24.1

Q ss_pred             CCCEEEEEEEEC---CCCEEEEEECCCCCCEEEC
Q ss_conf             777088999727---9960999951878522564
Q gi|254781135|r    2 KSGEWVTFQYTT---PDKTFLIALNGQDERQIYN   32 (83)
Q Consensus         2 s~g~W~~vq~tT---~Gg~fL~~~NG~D~~~~yn   32 (83)
                      ...+|..+-|.-   .|..+|+++|..+.++.|.
T Consensus        57 ~~~~~~v~a~~~~~~~~~~~lvv~N~~~~~~~~~   90 (204)
T 3faw_A           57 IKEKDLVIAYQTIDSKGDIYAVFVNADSKARNVL   90 (204)
T ss_dssp             CCSEESEEEEEEECTTCCEEEEEEECSSSCEEEE
T ss_pred             CCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf             6778808999998899998999990899728998


No 6  
>>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* (A:103-274)
Probab=18.51  E-value=60  Score=14.78  Aligned_cols=44  Identities=14%  Similarity=0.111  Sum_probs=29.5

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCC
Q ss_conf             7852256486424644456545421100135541014311568662487
Q gi|254781135|r   25 QDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDS   73 (83)
Q Consensus        25 ~D~~~~ynGTtWt~~~~~~~~a~~t~~~~~~ls~~w~fkNRlwFiq~~T   73 (83)
                      -.--++|.+++|+.....|++++-.-.     +.--+|+|-.|.++++-
T Consensus        24 ~er~~ifp~~~W~~v~~~G~S~AC~~~-----~~~SFyr~l~Wl~~k~~   67 (172)
T 2wr1_A           24 FEKVKILPRDQWTQHTTTGGSRACAVL-----DNPSFFRNMVWLTKKGS   67 (172)
T ss_dssp             EEEEECSCGGGCTTSBCCCCEEEEEET-----TEEECCTTEEECBCBTT
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHCCC
T ss_conf             013783577766664169865006689-----97668876688751688


No 7  
>>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} (A:434-695)
Probab=13.14  E-value=34  Score=16.10  Aligned_cols=16  Identities=25%  Similarity=0.515  Sum_probs=12.7

Q ss_pred             EEEECCCCEEEEEECC
Q ss_conf             9972799609999518
Q gi|254781135|r    9 FQYTTPDKTFLIALNG   24 (83)
Q Consensus         9 vq~tT~Gg~fL~~~NG   24 (83)
                      .|.|++||++..-||=
T Consensus       170 l~~T~~GG~~V~KvNF  185 (262)
T 1ej6_A          170 MHATAPGGSFVVKINF  185 (262)
T ss_dssp             HHHEEEEEEEEEEESS
T ss_pred             HHHCCCCCEEEEEECC
T ss_conf             8541478438999558


No 8  
>>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, envelope protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* (A:90-262)
Probab=12.31  E-value=1e+02  Score=13.51  Aligned_cols=43  Identities=14%  Similarity=0.162  Sum_probs=28.1

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCC
Q ss_conf             852256486424644456545421100135541014311568662487
Q gi|254781135|r   26 DERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDS   73 (83)
Q Consensus        26 D~~~~ynGTtWt~~~~~~~~a~~t~~~~~~ls~~w~fkNRlwFiq~~T   73 (83)
                      +--++|..++|..+...|++++-.-.     +---+|+|-.|.++++-
T Consensus        25 er~~i~~~~~w~~v~~~G~S~AC~~~-----g~~SFyr~l~Wl~~k~~   67 (173)
T 3ku3_A           25 EKVKILPKDRWTQHTTTGGSRACAVS-----GNPSFFRNMVWLTEKGS   67 (173)
T ss_dssp             EEECCSCGGGCTTSBCCCCEEEEEET-----TEEECCTTEEECBCBTT
T ss_pred             EEEEECCCCCCCCEECCCCCEECCCC-----CCCHHHHHHHHHHHCCC
T ss_conf             45883587643565359956422579-----96578886678753579


No 9  
>>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} (A:1-43)
Probab=12.29  E-value=85  Score=13.93  Aligned_cols=11  Identities=36%  Similarity=0.933  Sum_probs=8.7

Q ss_pred             EEECCCEEEEE
Q ss_conf             66248731789
Q gi|254781135|r   68 YIASDSMDAWT   78 (83)
Q Consensus        68 Fiq~~TL~Aw~   78 (83)
                      -++++||+.|.
T Consensus        27 VLEKdTmdVW~   37 (43)
T 2kd2_A           27 VLEKDTMDVWC   37 (43)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEECCCEEEEE
T ss_conf             99626344578


No 10 
>>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* (A:1-54,A:129-149)
Probab=10.12  E-value=93  Score=13.70  Aligned_cols=17  Identities=35%  Similarity=0.722  Sum_probs=12.9

Q ss_pred             CCCEEEEEECCCCCCEE
Q ss_conf             99609999518785225
Q gi|254781135|r   14 PDKTFLIALNGQDERQI   30 (83)
Q Consensus        14 ~Gg~fL~~~NG~D~~~~   30 (83)
                      ||-..|+--||.|-|-+
T Consensus        59 pgeellvwyngednp~i   75 (75)
T 2qpw_A           59 PGEELLVWYNGEDNPEI   75 (75)
T ss_dssp             TTCBCEECCCCCCCCCC
T ss_pred             CCCEEEEECCCCCCCCC
T ss_conf             99999985587545669


Done!