Query         gi|254781135|ref|YP_003065548.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 83
No_of_seqs    19 out of 21
Neff          3.1 
Searched_HMMs 23785
Date          Wed Jun  1 01:48:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781135.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3oug_A Aspartate 1-decarboxyla  23.9      34  0.0014   15.3   2.1   32    2-33     54-85  (114)
  2 1pqh_A Aspartate 1-decarboxyla  22.0      35  0.0015   15.2   1.8   33    2-34     68-100 (143)
  3 1vc3_B L-aspartate-alpha-decar  16.2      38  0.0016   15.0   0.9   32    2-33     27-58  (96)
  4 2c45_A Aspartate 1-decarboxyla  14.6      56  0.0024   14.1   1.5   33    2-34     51-83  (139)
  5 2wj9_A ARDB, intergenic-region  12.5      77  0.0032   13.3   2.1   40    2-42     89-131 (181)
  6 1uhe_A Aspartate 1-decarboxyla  12.2      56  0.0024   14.1   0.9   31    2-34     26-57  (97)
  7 3l2f_A Glycocyamine kinase bet  10.6      89  0.0038   13.0   2.6   22   10-31    228-249 (390)
  8 3n5b_B ASR0485 protein; PII, P  10.1      72   0.003   13.5   0.9   36    8-71     29-64  (112)
  9 1m15_A Arginine kinase, AK; cr   9.6      97  0.0041   12.8   2.6   21   11-31    211-231 (357)
 10 3jpz_A Lombricine kinase; mixe   9.5      98  0.0041   12.8   2.7   21   11-31    205-225 (366)

No 1  
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp}
Probab=23.88  E-value=34  Score=15.27  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCEEECC
Q ss_conf             77708899972799609999518785225648
Q gi|254781135|r    2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG   33 (83)
Q Consensus         2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG   33 (83)
                      .|.||+..-+.-+.||=-+++||+-|++.--|
T Consensus        54 NG~Rf~TYvI~g~~gSg~I~lNGaAArl~~~G   85 (114)
T 3oug_A           54 NGERLETYVIKGEPNSKTIALNGPAARRCEIG   85 (114)
T ss_dssp             TCCEEEEEEEEECTTSCCEEEEGGGGGGCCTT
T ss_pred             CCCEEEEEEEECCCCCCEEEECCHHHHCCCCC
T ss_conf             99389989997479975686276786206999


No 2  
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 1aw8_B 1aw8_E 1pyu_A 1aw8_A
Probab=21.99  E-value=35  Score=15.23  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=27.5

Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCEEECCC
Q ss_conf             777088999727996099995187852256486
Q gi|254781135|r    2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGN   34 (83)
Q Consensus         2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynGT   34 (83)
                      .|.||+..-+.-+-||=.+++||+-|++.--|-
T Consensus        68 NG~Rf~TYvI~g~~gSg~I~lNGAAAr~~~~GD  100 (143)
T 1pqh_A           68 NGKRFSTYAIAAERGSRIISVNGAAAHCASVGD  100 (143)
T ss_dssp             TCCEEEEEEEEECTTCCCEECCGGGGGTCCTTC
T ss_pred             CCCEEEEEEEECCCCCCEEEECCHHHHCCCCCC
T ss_conf             997799999963588875874688885479999


No 3  
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=16.23  E-value=38  Score=15.04  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCEEECC
Q ss_conf             77708899972799609999518785225648
Q gi|254781135|r    2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG   33 (83)
Q Consensus         2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG   33 (83)
                      .|.||+..-+.-+-||=.+++||+-|++.--|
T Consensus        27 NG~Rf~TYvI~g~~gSg~I~lNGaAAr~~~~G   58 (96)
T 1vc3_B           27 NGARLTTYALPGERGSGVIGINGAAAHLVKPG   58 (96)
T ss_dssp             TCCEEEEECEEECTTTTCEEEEGGGGGTCCTT
T ss_pred             CCCEEEEEEEECCCCCCEEEECCHHHHCCCCC
T ss_conf             99588899997248876487467887347999


No 4  
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=14.63  E-value=56  Score=14.08  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=27.0

Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCEEECCC
Q ss_conf             777088999727996099995187852256486
Q gi|254781135|r    2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGN   34 (83)
Q Consensus         2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynGT   34 (83)
                      .|.|++..-+.-+-||=.+++||+-|++.--|-
T Consensus        51 NG~Rf~TYvI~g~~gSg~I~lNGaAA~~~~~GD   83 (139)
T 2c45_A           51 NGARLVTYAITGERGSGVIGINGAAAHLVHPGD   83 (139)
T ss_dssp             TCCEEEECEEEECTTTTCEEEESSTTTTSCTTC
T ss_pred             CCCEEEEEEEECCCCCCEEEECCHHHHCCCCCC
T ss_conf             995889999876888852763667874469999


No 5  
>2wj9_A ARDB, intergenic-region protein; antirestriction, hydrolase inhibitor; 1.62A {Escherichia coli}
Probab=12.46  E-value=77  Score=13.33  Aligned_cols=40  Identities=13%  Similarity=0.317  Sum_probs=26.7

Q ss_pred             CCCEEEEEEEECCCCEEEEEEC---CCCCCEEECCCCCCCCCCC
Q ss_conf             7770889997279960999951---8785225648642464445
Q gi|254781135|r    2 KSGEWVTFQYTTPDKTFLIALN---GQDERQIYNGNNCKSSLLP   42 (83)
Q Consensus         2 s~g~W~~vq~tT~Gg~fL~~~N---G~D~~~~ynGTtWt~~~~~   42 (83)
                      .||.|+.....+ ||-|+.--.   +.+.-+++|..+|-.-...
T Consensus        89 ~GG~W~f~~LsN-GG~yMaP~~~~~~~~~~~l~n~~Ngf~~evS  131 (181)
T 2wj9_A           89 CGGIWNLYTLNN-GGAFMAPEPDDDDDETWVLFNAMNGNRAEMS  131 (181)
T ss_dssp             C--CEEEEEETT-SCEEEEEC------CCEEEEETTTTEEEEEC
T ss_pred             CCCEEEEEEECC-CEEEECCCCCCCCCCCEEEECCCCCCCCEEC
T ss_conf             998578999169-8267675765556631257517987765277


No 6  
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=12.19  E-value=56  Score=14.07  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=21.7

Q ss_pred             CCCEEEEEEEECC-CCEEEEEECCCCCCEEECCC
Q ss_conf             7770889997279-96099995187852256486
Q gi|254781135|r    2 KSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGN   34 (83)
Q Consensus         2 s~g~W~~vq~tT~-Gg~fL~~~NG~D~~~~ynGT   34 (83)
                      .|.||+..-+.-+ +|  .+++||+-|++.--|-
T Consensus        26 NG~Rf~TYvI~g~~sg--~I~lNGaAAr~~~~GD   57 (97)
T 1uhe_A           26 NGERFSTYVILGKKRG--EICVNGAAARKVAIGD   57 (97)
T ss_dssp             TCCEEEEECEEECSTT--CEEEEGGGGGGCCTTC
T ss_pred             CCCEEEEEEEECCCCC--EEEECCHHHHCCCCCC
T ss_conf             9958898998327888--7987878983479999


No 7  
>3l2f_A Glycocyamine kinase beta chain; phosphagen kinase, transition state ANA kinase, transferase; HET: ADP; 2.30A {Namalycastis SP} PDB: 3l2e_B 3l2d_A* 3l2g_A* 3l2e_A
Probab=10.57  E-value=89  Score=12.97  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=17.6

Q ss_pred             EEECCCCEEEEEECCCCCCEEE
Q ss_conf             9727996099995187852256
Q gi|254781135|r   10 QYTTPDKTFLIALNGQDERQIY   31 (83)
Q Consensus        10 q~tT~Gg~fL~~~NG~D~~~~y   31 (83)
                      .|-+..++|++.+|..|-.|+-
T Consensus       228 i~~n~dk~~~vwVNEEDHlRIi  249 (390)
T 3l2f_A          228 IWHNNEKNFLVWINEEDHIRVI  249 (390)
T ss_dssp             EEEESSSSEEEEESSSSSEEEE
T ss_pred             EEECCCCCEEEEECCCCEEEEE
T ss_conf             5775897078997466638999


No 8  
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=10.06  E-value=72  Score=13.49  Aligned_cols=36  Identities=8%  Similarity=0.158  Sum_probs=22.6

Q ss_pred             EEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEC
Q ss_conf             9997279960999951878522564864246444565454211001355410143115686624
Q gi|254781135|r    8 TFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIAS   71 (83)
Q Consensus         8 ~vq~tT~Gg~fL~~~NG~D~~~~ynGTtWt~~~~~~~~a~~t~~~~~~ls~~w~fkNRlwFiq~   71 (83)
                      +.||+|=|--|.+|.-|..                            .=.|..||.-||||+-.
T Consensus        29 YLNHPTFGLLY~Vc~~~e~----------------------------~~LyaTLYAQRlFFLVt   64 (112)
T 3n5b_B           29 YINHPTWGLLYRICMVDES----------------------------QDLFTTLYAQRLFFLVG   64 (112)
T ss_dssp             EEEETTTEEEEEEEEEETT----------------------------EEEEEESSSSCCEEEEE
T ss_pred             CCCCCCCCHHEEEEECCCC----------------------------CHHHHHHHHHHHEEEEE
T ss_conf             0268850321064057887----------------------------18999999875304798


No 9  
>1m15_A Arginine kinase, AK; creatine kinase, phosphagen kinase, transition state analog, adenosine triphosphate, transferas; HET: ARG ADP; 1.20A {Limulus polyphemus} SCOP: a.83.1.1 d.128.1.2 PDB: 1m80_A 3m10_A 1bg0_A* 1p50_A* 1sd0_A* 1p52_A* 1rl9_A* 2j1q_A
Probab=9.64  E-value=97  Score=12.77  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=17.2

Q ss_pred             EECCCCEEEEEECCCCCCEEE
Q ss_conf             727996099995187852256
Q gi|254781135|r   11 YTTPDKTFLIALNGQDERQIY   31 (83)
Q Consensus        11 ~tT~Gg~fL~~~NG~D~~~~y   31 (83)
                      +-+..++|++++|..|-.|+-
T Consensus       211 ~~n~d~~~~i~VNeEDHlRI~  231 (357)
T 1m15_A          211 FHNDAKTFLVWVNEEDHLRII  231 (357)
T ss_dssp             EEETTSSEEEEESSSSSEEEE
T ss_pred             EECCCCCEEEEECCCCEEEEE
T ss_conf             765887278997466628999


No 10 
>3jpz_A Lombricine kinase; mixed alpha / beta, transferase; 1.95A {Urechis caupo} PDB: 3jq3_A*
Probab=9.54  E-value=98  Score=12.75  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=17.4

Q ss_pred             EECCCCEEEEEECCCCCCEEE
Q ss_conf             727996099995187852256
Q gi|254781135|r   11 YTTPDKTFLIALNGQDERQIY   31 (83)
Q Consensus        11 ~tT~Gg~fL~~~NG~D~~~~y   31 (83)
                      |-+..++|++.+|..|-.|+-
T Consensus       205 ~~n~d~~~~vwVNEEDHlRI~  225 (366)
T 3jpz_A          205 WHNNEKTFLIWINEEDHMRVI  225 (366)
T ss_dssp             EEETTSCEEEEESSSSSEEEE
T ss_pred             EECCCCCEEEEECCCCEEEEE
T ss_conf             885897178997366628999


Done!