BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781135|ref|YP_003065548.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62] (83 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781135|ref|YP_003065548.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62] gi|254040812|gb|ACT57608.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62] Length = 83 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW Sbjct: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60 Query: 61 FFKNRQWYIASDSMDAWTCQLKL 83 FFKNRQWYIASDSMDAWTCQLKL Sbjct: 61 FFKNRQWYIASDSMDAWTCQLKL 83 >gi|150397022|ref|YP_001327489.1| hypothetical protein Smed_1819 [Sinorhizobium medicae WSM419] gi|150028537|gb|ABR60654.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 538 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60 M G+W FQ++ ++L+ LNG ++R++YNG ++ G +YGW Sbjct: 125 MSGGDWCAFQHSNAGTSWLVCLNGANDRRLYNGTTWTTAPAITFTDGTTMAQ---LNYGW 181 Query: 61 FFKNRQWYIASDSMDAW 77 FKNR++++ + ++DA+ Sbjct: 182 LFKNREFFLKNGTLDAY 198 >gi|152982947|ref|YP_001353888.1| hypothetical protein mma_2198 [Janthinobacterium sp. Marseille] gi|151283024|gb|ABR91434.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 519 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%) Query: 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWF 61 S +W + T F+ +NG D Q++NG ++ Sbjct: 111 TSDKWQHVNFGTAGGNFMYLVNGSDAPQLFNGTTWQAVTAVSAPVSITGVTASNLINVTA 170 Query: 62 FKNRQWYIASDSMDAW 77 FK R W+I +SM AW Sbjct: 171 FKARLWFIERNSMKAW 186 >gi|316933870|ref|YP_004108852.1| hypothetical protein Rpdx1_2528 [Rhodopseudomonas palustris DX-1] gi|315601584|gb|ADU44119.1| hypothetical protein Rpdx1_2528 [Rhodopseudomonas palustris DX-1] Length = 558 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60 + G WV Q+ TP FL A+NG D +++G++ + + S+ W Sbjct: 148 LTGGNWVAVQFATPGGVFLRAVNGVDAPLVFDGSDWAETPA------ITGVDAASLSHVW 201 Query: 61 FFKNRQWYIASDSMDAW 77 + R +++ S+ A+ Sbjct: 202 LHQRRLFFVKGGSLSAY 218 >gi|315122528|ref|YP_004063017.1| hypothetical protein CKC_03900 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495930|gb|ADR52529.1| hypothetical protein CKC_03900 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 532 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 58/77 (75%), Positives = 67/77 (87%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60 M+SG+W TF YTTP+KTFLIALNGQDERQIY+GN+ KS PI+C GH+ NP+YFSYGW Sbjct: 117 MQSGDWSTFHYTTPEKTFLIALNGQDERQIYDGNDWKSDYPPIVCEGHSDINPIYFSYGW 176 Query: 61 FFKNRQWYIASDSMDAW 77 FKNRQWYIA+DSMDAW Sbjct: 177 LFKNRQWYIAADSMDAW 193 >gi|227822437|ref|YP_002826409.1| hypothetical protein NGR_c18920 [Sinorhizobium fredii NGR234] gi|227341438|gb|ACP25656.1| hypothetical protein NGR_c18920 [Sinorhizobium fredii NGR234] Length = 536 Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60 + G+W FQ+TT +FL+ LNG D R+IY+G ++ +YGW Sbjct: 123 LAGGDWCAFQHTTAGGSFLVCLNGADTRRIYDGTAWTTTPTITFPDATAMAE---LNYGW 179 Query: 61 FFKNRQWYIASDSMDAW 77 FKNR++++ + ++DA+ Sbjct: 180 LFKNREFFLKNATLDAY 196 >gi|13470677|ref|NP_102246.1| hypothetical protein mll0452 [Mesorhizobium loti MAFF303099] gi|14021419|dbj|BAB48032.1| mll0452 [Mesorhizobium loti MAFF303099] Length = 528 Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60 + SG + Q TP +L ALNG D + ++G + NQ S+ W Sbjct: 116 LTSGYFSYVQMPTPGGYYLSALNGTDSMRQFDGTTWTTVAALGPSINTNQ-----LSFIW 170 Query: 61 FFKNRQWYIASDSMDAW 77 ++NRQ+++ ++++ W Sbjct: 171 TYRNRQFFVQKNTLNVW 187 >gi|306839390|ref|ZP_07472204.1| Hypothetical protein BROD_2246 [Brucella sp. NF 2653] gi|306405513|gb|EFM61778.1| Hypothetical protein BROD_2246 [Brucella sp. NF 2653] Length = 481 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 1 MKSGEWVTFQYTT-PDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYG 59 + G+W + + LI +NG D + +NG G + S Sbjct: 115 LGGGKWSSVIFANSAGDISLIGVNGADYMKRFNGTAWTDIS-DTTTPGVTGVDTRKLSAI 173 Query: 60 WFFKNRQWYIASDSMDAW 77 W ++NR +++ D+M AW Sbjct: 174 WAYQNRLFFVQQDTMSAW 191 >gi|254720058|ref|ZP_05181869.1| hypothetical protein Bru83_11056 [Brucella sp. 83/13] gi|265985065|ref|ZP_06097800.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264663657|gb|EEZ33918.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 481 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 1 MKSGEWVTFQYTT-PDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYG 59 + G+W + + LI +NG D + +NG G + S Sbjct: 115 LGGGKWSSVMFANSAGDISLIGVNGADYMKRFNGTAWTDIS-DTTTPGVTGVDTRKLSAI 173 Query: 60 WFFKNRQWYIASDSMDAW 77 W ++NR +++ D+M AW Sbjct: 174 WAYQNRLFFVQQDTMSAW 191 >gi|209548341|ref|YP_002280258.1| hypothetical protein Rleg2_0736 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534097|gb|ACI54032.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 607 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 1 MKSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPV 54 M S W QYT P + FL +NG D ++NG + ++ L A QN V Sbjct: 110 MASAHWSVQQYTNPAGQEFLRLVNGLDTPLLFNGTSWTNNFLVGTAALATQNVAV 164 Score = 34.0 bits (76), Expect = 6.3, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 15/40 (37%) Query: 38 SSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77 ++ ++ +++R W+I +S + W Sbjct: 228 ATPYVASTMISGISDSSLLIAVTAYRSRLWFIEKNSTNVW 267 >gi|116253670|ref|YP_769508.1| hypothetical protein RL3930 [Rhizobium leguminosarum bv. viciae 3841] gi|115258318|emb|CAK09420.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 607 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 1 MKSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYG 59 + S W QYT P + +L +NG D +YNG +++L QN V Sbjct: 110 LSSARWSVQQYTNPAGQEYLRLVNGLDLPLLYNGTTWTNNILVGTATLATQNVAVKAVQY 169 Query: 60 WF 61 Sbjct: 170 TL 171 Score = 35.9 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 15/40 (37%) Query: 38 SSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77 ++ +P +++R W+I +S + W Sbjct: 228 ATPYVSSTMITGIPDPSLLIAITAYRSRLWFIEKNSTNVW 267 >gi|117925017|ref|YP_865634.1| hypothetical protein Mmc1_1720 [Magnetococcus sp. MC-1] gi|117608773|gb|ABK44228.1| hypothetical protein Mmc1_1720 [Magnetococcus sp. MC-1] Length = 508 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 9/77 (11%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60 + S W Y K L NG D Y+G + ++ + Sbjct: 109 LASSRWQHVNY----KGRLFIANGVDAPMDYDGTSWNTTAWSG-----EGLITTHLIGVN 159 Query: 61 FFKNRQWYIASDSMDAW 77 F+ R +++ +S W Sbjct: 160 LFQQRLFFVEKESAAVW 176 >gi|327191475|gb|EGE58495.1| hypothetical protein RHECNPAF_300005 [Rhizobium etli CNPAF512] Length = 607 Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 1 MKSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPV 54 + S W QYT P + FL +NG D ++NG + ++ L A QN V Sbjct: 110 LASAHWSVQQYTNPAGQEFLRLVNGLDTPLLFNGTSWTNNFLVGTAALATQNVAV 164 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 16/40 (40%) Query: 38 SSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77 ++ ++ + +++R W+I +S + W Sbjct: 228 ATPYVASTMITGISDASLLAAVTAYRSRLWFIEKNSTNVW 267 >gi|218674218|ref|ZP_03523887.1| hypothetical protein RetlG_23247 [Rhizobium etli GR56] Length = 457 Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 1 MKSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPV 54 + S W QYT P + FL +NG D I+NG + ++ L A QN V Sbjct: 110 LASAHWSVQQYTNPAGQEFLRLVNGLDTPLIFNGTSWTNNFLVGTAALATQNVAV 164 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 5/41 (12%), Positives = 16/41 (39%) Query: 37 KSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77 ++ ++ + +++R W+I +S + W Sbjct: 227 AATPYVASTMITGMSDAALLAAVTAYRSRLWFIEKNSTNVW 267 >gi|126444876|ref|YP_001063338.1| hypothetical protein BURPS668_A2344 [Burkholderia pseudomallei 668] gi|126224367|gb|ABN87872.1| conserved hypothetical protein [Burkholderia pseudomallei 668] Length = 590 Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 34/150 (22%), Gaps = 73/150 (48%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQI------------------------------ 30 + + W +T TFL+ +NG D + Sbjct: 106 LTNSRWQWVNFTNAGLTFLVMVNGVDAPLLYDGTTWRRIRSAVPQSITSITASGTTATLT 165 Query: 31 ----------------------YNGN-----------NCKSSLLPIICA----------G 47 YNG + P A Sbjct: 166 TGTAHGLQTGDQITVSGAVPAVYNGTFTVTVTGANTLTYTMTGAPGGPATTVGTYTVLWS 225 Query: 48 HNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77 +P F + F NR W+ + +M +W Sbjct: 226 ITGVDPTTFVHINVFANRLWFTQTHTMQSW 255 >gi|167907341|ref|ZP_02494546.1| hypothetical protein BpseN_34245 [Burkholderia pseudomallei NCTC 13177] Length = 590 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 34/150 (22%), Gaps = 73/150 (48%) Query: 1 MKSGEWVTFQYTTPDKTFLIALNGQDERQI------------------------------ 30 + + W +T TFL+ +NG D + Sbjct: 106 LTNSRWQWVNFTNAGLTFLVMVNGVDAPLLYDGTTWRRIRSAVPQSITSITASGTTATLT 165 Query: 31 ----------------------YNGN-----------NCKSSLLPIICA----------G 47 YNG + P A Sbjct: 166 TGTAHGLQTGDQITVSGAVPAVYNGTFTVTVTGANTLTYTMTGAPGGPATTVGTYTVLWS 225 Query: 48 HNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77 +P F + F NR W+ + +M +W Sbjct: 226 ITGVDPTTFVHINVFANRLWFTQTHTMQSW 255 >gi|110632595|ref|YP_672803.1| hypothetical protein Meso_0234 [Mesorhizobium sp. BNC1] gi|110283579|gb|ABG61638.1| hypothetical protein Meso_0234 [Chelativorans sp. BNC1] Length = 632 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYG 59 G+W T Q+ T FL+ +NGQ IY+G ++ + F G Sbjct: 140 TGGDWFTVQFATTGGVFLVGVNGQSTGFIYDGQAFYPNVAGGVWTVSFDAETTPFQVG 197 Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%) Query: 39 SLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77 G + ++ W +KN W++ +S+ AW Sbjct: 258 VPGVEFPDGLTSAD---MAFVWVYKNTLWFVQKESLTAW 293 >gi|15320622|ref|NP_203466.1| hypothetical protein Mx8p52 [Myxococcus phage Mx8] gi|15281732|gb|AAK94387.1|AF396866_52 p52 [Myxococcus phage Mx8] Length = 536 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%) Query: 11 YTTPDKTFLIALNGQDERQIYNGNN--CKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWY 68 + T FL + + Y+ + + + NP + FK R W Sbjct: 128 FVTQRGHFLFYADETNGLFRYSESTDTWTAVAQGTGVGEIDGVNPANIVFVAVFKQRVWL 187 Query: 69 IASDSMDAW 77 + D+ AW Sbjct: 188 VERDTARAW 196 >gi|319783505|ref|YP_004142981.1| hypothetical protein Mesci_3814 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169393|gb|ADV12931.1| hypothetical protein Mesci_3814 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 617 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%) Query: 33 GNNCKSSLL--PIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDA 76 G+ I A S+ W ++NR ++I + +M A Sbjct: 226 GSAKADIPGGVVQISAAITGVATSVLSHVWLYRNRLFFIENGTMRA 271 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGN-NCKSSLLPII 44 SG + +TT +F++A+NG D Q+Y+ + + + Sbjct: 121 TSGYYSYVNFTTSGGSFVVAVNGTDFLQLYSTSFDWSAVNGLPT 164 >gi|168017766|ref|XP_001761418.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687424|gb|EDQ73807.1| predicted protein [Physcomitrella patens subsp. patens] Length = 469 Score = 35.9 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 14/88 (15%) Query: 1 MKSGEWVTFQYT-------TPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNP 53 + SG+W T + + L ++G +++ ++C S+ L + Sbjct: 320 LLSGQWSTASFAFSKCCTSASGRLMLDLVDG--ALVVFDTSSCTSTTLHG-----TLLDV 372 Query: 54 VYFSYGWFFKNRQWYIASDSMDAWTCQL 81 V S GW + +++I +D + CQ+ Sbjct: 373 VGMSKGWRQETVRFFIENDYIHLTPCQV 400 >gi|302545849|ref|ZP_07298191.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302463467|gb|EFL26560.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length = 369 Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 2/61 (3%) Query: 6 WVTFQYTT-PDKTFLIALNGQD-ERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFK 63 W +T P +++ +G + Y+G+ + P + W + Sbjct: 153 WTYQDFTAVPGAAWVVGEDGTGLKVLRYDGSGWTTQPTPDGVLFLMGITARTATDVWAWA 212 Query: 64 N 64 + Sbjct: 213 D 213 >gi|260579093|ref|ZP_05846991.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258602778|gb|EEW16057.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 1446 Score = 33.6 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 4/57 (7%), Positives = 15/57 (26%) Query: 8 TFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKN 64 Q+ ++ +G + + +NG + + + + Sbjct: 608 AQQFQKATTLWIDTTSGANTPKRWNGTAWVAVTDKTARDAATRATQASSAATTAQQR 664 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.305 0.127 0.373 Lambda K H 0.267 0.0391 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 746,359,859 Number of Sequences: 14124377 Number of extensions: 18720088 Number of successful extensions: 70449 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 70402 Number of HSP's gapped (non-prelim): 45 length of query: 83 length of database: 4,842,793,630 effective HSP length: 54 effective length of query: 29 effective length of database: 4,080,077,272 effective search space: 118322240888 effective search space used: 118322240888 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 75 (33.6 bits)