BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781135|ref|YP_003065548.1| hypothetical protein
CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781135|ref|YP_003065548.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040812|gb|ACT57608.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 83

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60
          MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW
Sbjct: 1  MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60

Query: 61 FFKNRQWYIASDSMDAWTCQLKL 83
          FFKNRQWYIASDSMDAWTCQLKL
Sbjct: 61 FFKNRQWYIASDSMDAWTCQLKL 83


>gi|150397022|ref|YP_001327489.1| hypothetical protein Smed_1819 [Sinorhizobium medicae WSM419]
 gi|150028537|gb|ABR60654.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 538

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60
           M  G+W  FQ++    ++L+ LNG ++R++YNG    ++       G         +YGW
Sbjct: 125 MSGGDWCAFQHSNAGTSWLVCLNGANDRRLYNGTTWTTAPAITFTDGTTMAQ---LNYGW 181

Query: 61  FFKNRQWYIASDSMDAW 77
            FKNR++++ + ++DA+
Sbjct: 182 LFKNREFFLKNGTLDAY 198


>gi|152982947|ref|YP_001353888.1| hypothetical protein mma_2198 [Janthinobacterium sp. Marseille]
 gi|151283024|gb|ABR91434.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 519

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%)

Query: 2   KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWF 61
            S +W    + T    F+  +NG D  Q++NG   ++                       
Sbjct: 111 TSDKWQHVNFGTAGGNFMYLVNGSDAPQLFNGTTWQAVTAVSAPVSITGVTASNLINVTA 170

Query: 62  FKNRQWYIASDSMDAW 77
           FK R W+I  +SM AW
Sbjct: 171 FKARLWFIERNSMKAW 186


>gi|316933870|ref|YP_004108852.1| hypothetical protein Rpdx1_2528 [Rhodopseudomonas palustris DX-1]
 gi|315601584|gb|ADU44119.1| hypothetical protein Rpdx1_2528 [Rhodopseudomonas palustris DX-1]
          Length = 558

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60
           +  G WV  Q+ TP   FL A+NG D   +++G++   +            +    S+ W
Sbjct: 148 LTGGNWVAVQFATPGGVFLRAVNGVDAPLVFDGSDWAETPA------ITGVDAASLSHVW 201

Query: 61  FFKNRQWYIASDSMDAW 77
             + R +++   S+ A+
Sbjct: 202 LHQRRLFFVKGGSLSAY 218


>gi|315122528|ref|YP_004063017.1| hypothetical protein CKC_03900 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495930|gb|ADR52529.1| hypothetical protein CKC_03900 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 532

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 67/77 (87%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60
           M+SG+W TF YTTP+KTFLIALNGQDERQIY+GN+ KS   PI+C GH+  NP+YFSYGW
Sbjct: 117 MQSGDWSTFHYTTPEKTFLIALNGQDERQIYDGNDWKSDYPPIVCEGHSDINPIYFSYGW 176

Query: 61  FFKNRQWYIASDSMDAW 77
            FKNRQWYIA+DSMDAW
Sbjct: 177 LFKNRQWYIAADSMDAW 193


>gi|227822437|ref|YP_002826409.1| hypothetical protein NGR_c18920 [Sinorhizobium fredii NGR234]
 gi|227341438|gb|ACP25656.1| hypothetical protein NGR_c18920 [Sinorhizobium fredii NGR234]
          Length = 536

 Score = 93.7 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60
           +  G+W  FQ+TT   +FL+ LNG D R+IY+G    ++                 +YGW
Sbjct: 123 LAGGDWCAFQHTTAGGSFLVCLNGADTRRIYDGTAWTTTPTITFPDATAMAE---LNYGW 179

Query: 61  FFKNRQWYIASDSMDAW 77
            FKNR++++ + ++DA+
Sbjct: 180 LFKNREFFLKNATLDAY 196


>gi|13470677|ref|NP_102246.1| hypothetical protein mll0452 [Mesorhizobium loti MAFF303099]
 gi|14021419|dbj|BAB48032.1| mll0452 [Mesorhizobium loti MAFF303099]
          Length = 528

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60
           + SG +   Q  TP   +L ALNG D  + ++G    +          NQ      S+ W
Sbjct: 116 LTSGYFSYVQMPTPGGYYLSALNGTDSMRQFDGTTWTTVAALGPSINTNQ-----LSFIW 170

Query: 61  FFKNRQWYIASDSMDAW 77
            ++NRQ+++  ++++ W
Sbjct: 171 TYRNRQFFVQKNTLNVW 187


>gi|306839390|ref|ZP_07472204.1| Hypothetical protein BROD_2246 [Brucella sp. NF 2653]
 gi|306405513|gb|EFM61778.1| Hypothetical protein BROD_2246 [Brucella sp. NF 2653]
          Length = 481

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 1   MKSGEWVTFQYTT-PDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYG 59
           +  G+W +  +        LI +NG D  + +NG             G    +    S  
Sbjct: 115 LGGGKWSSVIFANSAGDISLIGVNGADYMKRFNGTAWTDIS-DTTTPGVTGVDTRKLSAI 173

Query: 60  WFFKNRQWYIASDSMDAW 77
           W ++NR +++  D+M AW
Sbjct: 174 WAYQNRLFFVQQDTMSAW 191


>gi|254720058|ref|ZP_05181869.1| hypothetical protein Bru83_11056 [Brucella sp. 83/13]
 gi|265985065|ref|ZP_06097800.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|264663657|gb|EEZ33918.1| conserved hypothetical protein [Brucella sp. 83/13]
          Length = 481

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 1   MKSGEWVTFQYTT-PDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYG 59
           +  G+W +  +        LI +NG D  + +NG             G    +    S  
Sbjct: 115 LGGGKWSSVMFANSAGDISLIGVNGADYMKRFNGTAWTDIS-DTTTPGVTGVDTRKLSAI 173

Query: 60  WFFKNRQWYIASDSMDAW 77
           W ++NR +++  D+M AW
Sbjct: 174 WAYQNRLFFVQQDTMSAW 191


>gi|209548341|ref|YP_002280258.1| hypothetical protein Rleg2_0736 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534097|gb|ACI54032.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 607

 Score = 64.8 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MKSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPV 54
           M S  W   QYT P  + FL  +NG D   ++NG +  ++ L    A   QN  V
Sbjct: 110 MASAHWSVQQYTNPAGQEFLRLVNGLDTPLLFNGTSWTNNFLVGTAALATQNVAV 164



 Score = 34.0 bits (76), Expect = 6.3,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 15/40 (37%)

Query: 38  SSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77
           ++           ++         +++R W+I  +S + W
Sbjct: 228 ATPYVASTMISGISDSSLLIAVTAYRSRLWFIEKNSTNVW 267


>gi|116253670|ref|YP_769508.1| hypothetical protein RL3930 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258318|emb|CAK09420.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 607

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 1   MKSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYG 59
           + S  W   QYT P  + +L  +NG D   +YNG    +++L        QN  V     
Sbjct: 110 LSSARWSVQQYTNPAGQEYLRLVNGLDLPLLYNGTTWTNNILVGTATLATQNVAVKAVQY 169

Query: 60  WF 61
             
Sbjct: 170 TL 171



 Score = 35.9 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 38  SSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77
           ++            +P        +++R W+I  +S + W
Sbjct: 228 ATPYVSSTMITGIPDPSLLIAITAYRSRLWFIEKNSTNVW 267


>gi|117925017|ref|YP_865634.1| hypothetical protein Mmc1_1720 [Magnetococcus sp. MC-1]
 gi|117608773|gb|ABK44228.1| hypothetical protein Mmc1_1720 [Magnetococcus sp. MC-1]
          Length = 508

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 9/77 (11%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60
           + S  W    Y    K  L   NG D    Y+G +  ++               +     
Sbjct: 109 LASSRWQHVNY----KGRLFIANGVDAPMDYDGTSWNTTAWSG-----EGLITTHLIGVN 159

Query: 61  FFKNRQWYIASDSMDAW 77
            F+ R +++  +S   W
Sbjct: 160 LFQQRLFFVEKESAAVW 176


>gi|327191475|gb|EGE58495.1| hypothetical protein RHECNPAF_300005 [Rhizobium etli CNPAF512]
          Length = 607

 Score = 64.4 bits (155), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MKSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPV 54
           + S  W   QYT P  + FL  +NG D   ++NG +  ++ L    A   QN  V
Sbjct: 110 LASAHWSVQQYTNPAGQEFLRLVNGLDTPLLFNGTSWTNNFLVGTAALATQNVAV 164



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 16/40 (40%)

Query: 38  SSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77
           ++           ++    +    +++R W+I  +S + W
Sbjct: 228 ATPYVASTMITGISDASLLAAVTAYRSRLWFIEKNSTNVW 267


>gi|218674218|ref|ZP_03523887.1| hypothetical protein RetlG_23247 [Rhizobium etli GR56]
          Length = 457

 Score = 63.6 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MKSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPV 54
           + S  W   QYT P  + FL  +NG D   I+NG +  ++ L    A   QN  V
Sbjct: 110 LASAHWSVQQYTNPAGQEFLRLVNGLDTPLIFNGTSWTNNFLVGTAALATQNVAV 164



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 5/41 (12%), Positives = 16/41 (39%)

Query: 37  KSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77
            ++           ++    +    +++R W+I  +S + W
Sbjct: 227 AATPYVASTMITGMSDAALLAAVTAYRSRLWFIEKNSTNVW 267


>gi|126444876|ref|YP_001063338.1| hypothetical protein BURPS668_A2344 [Burkholderia pseudomallei 668]
 gi|126224367|gb|ABN87872.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 590

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 34/150 (22%), Gaps = 73/150 (48%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQI------------------------------ 30
           + +  W    +T    TFL+ +NG D   +                              
Sbjct: 106 LTNSRWQWVNFTNAGLTFLVMVNGVDAPLLYDGTTWRRIRSAVPQSITSITASGTTATLT 165

Query: 31  ----------------------YNGN-----------NCKSSLLPIICA----------G 47
                                 YNG                +  P   A           
Sbjct: 166 TGTAHGLQTGDQITVSGAVPAVYNGTFTVTVTGANTLTYTMTGAPGGPATTVGTYTVLWS 225

Query: 48  HNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77
               +P  F +   F NR W+  + +M +W
Sbjct: 226 ITGVDPTTFVHINVFANRLWFTQTHTMQSW 255


>gi|167907341|ref|ZP_02494546.1| hypothetical protein BpseN_34245 [Burkholderia pseudomallei NCTC
           13177]
          Length = 590

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 34/150 (22%), Gaps = 73/150 (48%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQI------------------------------ 30
           + +  W    +T    TFL+ +NG D   +                              
Sbjct: 106 LTNSRWQWVNFTNAGLTFLVMVNGVDAPLLYDGTTWRRIRSAVPQSITSITASGTTATLT 165

Query: 31  ----------------------YNGN-----------NCKSSLLPIICA----------G 47
                                 YNG                +  P   A           
Sbjct: 166 TGTAHGLQTGDQITVSGAVPAVYNGTFTVTVTGANTLTYTMTGAPGGPATTVGTYTVLWS 225

Query: 48  HNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77
               +P  F +   F NR W+  + +M +W
Sbjct: 226 ITGVDPTTFVHINVFANRLWFTQTHTMQSW 255


>gi|110632595|ref|YP_672803.1| hypothetical protein Meso_0234 [Mesorhizobium sp. BNC1]
 gi|110283579|gb|ABG61638.1| hypothetical protein Meso_0234 [Chelativorans sp. BNC1]
          Length = 632

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 2   KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYG 59
             G+W T Q+ T    FL+ +NGQ    IY+G     ++   +           F  G
Sbjct: 140 TGGDWFTVQFATTGGVFLVGVNGQSTGFIYDGQAFYPNVAGGVWTVSFDAETTPFQVG 197



 Score = 39.0 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 39  SLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77
                   G    +    ++ W +KN  W++  +S+ AW
Sbjct: 258 VPGVEFPDGLTSAD---MAFVWVYKNTLWFVQKESLTAW 293


>gi|15320622|ref|NP_203466.1| hypothetical protein Mx8p52 [Myxococcus phage Mx8]
 gi|15281732|gb|AAK94387.1|AF396866_52 p52 [Myxococcus phage Mx8]
          Length = 536

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 11  YTTPDKTFLIALNGQDERQIYNGNN--CKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWY 68
           + T    FL   +  +    Y+ +     +          +  NP    +   FK R W 
Sbjct: 128 FVTQRGHFLFYADETNGLFRYSESTDTWTAVAQGTGVGEIDGVNPANIVFVAVFKQRVWL 187

Query: 69  IASDSMDAW 77
           +  D+  AW
Sbjct: 188 VERDTARAW 196


>gi|319783505|ref|YP_004142981.1| hypothetical protein Mesci_3814 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169393|gb|ADV12931.1| hypothetical protein Mesci_3814 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 617

 Score = 44.0 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 33  GNNCKSSLL--PIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDA 76
           G+           I A          S+ W ++NR ++I + +M A
Sbjct: 226 GSAKADIPGGVVQISAAITGVATSVLSHVWLYRNRLFFIENGTMRA 271



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 2   KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGN-NCKSSLLPII 44
            SG +    +TT   +F++A+NG D  Q+Y+ + +  +      
Sbjct: 121 TSGYYSYVNFTTSGGSFVVAVNGTDFLQLYSTSFDWSAVNGLPT 164


>gi|168017766|ref|XP_001761418.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687424|gb|EDQ73807.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 469

 Score = 35.9 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 1   MKSGEWVTFQYT-------TPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNP 53
           + SG+W T  +           +  L  ++G     +++ ++C S+ L          + 
Sbjct: 320 LLSGQWSTASFAFSKCCTSASGRLMLDLVDG--ALVVFDTSSCTSTTLHG-----TLLDV 372

Query: 54  VYFSYGWFFKNRQWYIASDSMDAWTCQL 81
           V  S GW  +  +++I +D +    CQ+
Sbjct: 373 VGMSKGWRQETVRFFIENDYIHLTPCQV 400


>gi|302545849|ref|ZP_07298191.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302463467|gb|EFL26560.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 369

 Score = 34.0 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 6   WVTFQYTT-PDKTFLIALNGQD-ERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFK 63
           W    +T  P   +++  +G   +   Y+G+   +   P              +  W + 
Sbjct: 153 WTYQDFTAVPGAAWVVGEDGTGLKVLRYDGSGWTTQPTPDGVLFLMGITARTATDVWAWA 212

Query: 64  N 64
           +
Sbjct: 213 D 213


>gi|260579093|ref|ZP_05846991.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258602778|gb|EEW16057.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 1446

 Score = 33.6 bits (75), Expect = 8.9,   Method: Composition-based stats.
 Identities = 4/57 (7%), Positives = 15/57 (26%)

Query: 8   TFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKN 64
             Q+      ++   +G +  + +NG    +           +      +     + 
Sbjct: 608 AQQFQKATTLWIDTTSGANTPKRWNGTAWVAVTDKTARDAATRATQASSAATTAQQR 664


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.305    0.127    0.373 

Lambda     K      H
   0.267   0.0391    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 746,359,859
Number of Sequences: 14124377
Number of extensions: 18720088
Number of successful extensions: 70449
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 70402
Number of HSP's gapped (non-prelim): 45
length of query: 83
length of database: 4,842,793,630
effective HSP length: 54
effective length of query: 29
effective length of database: 4,080,077,272
effective search space: 118322240888
effective search space used: 118322240888
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 75 (33.6 bits)