RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781135|ref|YP_003065548.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62] (83 letters) >gnl|CDD|39623 KOG4422, KOG4422, KOG4422, Uncharacterized conserved protein [Function unknown]. Length = 625 Score = 30.1 bits (67), Expect = 0.15 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%) Query: 37 KSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77 + L ++ +N +N + + F R + DS +W Sbjct: 153 QLELFRLVTY-YNSSNVPFAEWEEFVGMRNF--GEDSTSSW 190 >gnl|CDD|33792 COG4033, COG4033, Uncharacterized protein conserved in archaea [Function unknown]. Length = 102 Score = 25.2 bits (55), Expect = 4.2 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 3 SGEWVTFQYTTP-DKTFLIALNGQDE 27 SGE + F YT P TF++ + + E Sbjct: 58 SGEAIIFPYTKPCYGTFVLKIKVEAE 83 >gnl|CDD|144602 pfam01067, Calpain_III, Calpain large subunit, domain III. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. Length = 139 Score = 24.2 bits (53), Expect = 8.9 Identities = 6/31 (19%), Positives = 14/31 (45%) Query: 6 WVTFQYTTPDKTFLIALNGQDERQIYNGNNC 36 ++ D + L+AL ++ R+ G + Sbjct: 34 RLSLTEPDDDDSVLVALMQKNRRKKRKGEDN 64 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.135 0.461 Gapped Lambda K H 0.267 0.0733 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,075,905 Number of extensions: 45262 Number of successful extensions: 95 Number of sequences better than 10.0: 1 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 5 Length of query: 83 Length of database: 6,263,737 Length adjustment: 53 Effective length of query: 30 Effective length of database: 5,118,460 Effective search space: 153553800 Effective search space used: 153553800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.4 bits)