RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781135|ref|YP_003065548.1| hypothetical protein
CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)



>gnl|CDD|39623 KOG4422, KOG4422, KOG4422, Uncharacterized conserved protein
           [Function unknown].
          Length = 625

 Score = 30.1 bits (67), Expect = 0.15
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 37  KSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAW 77
           +  L  ++   +N +N  +  +  F   R +    DS  +W
Sbjct: 153 QLELFRLVTY-YNSSNVPFAEWEEFVGMRNF--GEDSTSSW 190


>gnl|CDD|33792 COG4033, COG4033, Uncharacterized protein conserved in archaea
          [Function unknown].
          Length = 102

 Score = 25.2 bits (55), Expect = 4.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 3  SGEWVTFQYTTP-DKTFLIALNGQDE 27
          SGE + F YT P   TF++ +  + E
Sbjct: 58 SGEAIIFPYTKPCYGTFVLKIKVEAE 83


>gnl|CDD|144602 pfam01067, Calpain_III, Calpain large subunit, domain III.  The
          function of the domain III and I are currently unknown.
          Domain II is a cysteine protease and domain IV is a
          calcium binding domain. Calpains are believed to
          participate in intracellular signaling pathways
          mediated by calcium ions.
          Length = 139

 Score = 24.2 bits (53), Expect = 8.9
 Identities = 6/31 (19%), Positives = 14/31 (45%)

Query: 6  WVTFQYTTPDKTFLIALNGQDERQIYNGNNC 36
           ++      D + L+AL  ++ R+   G + 
Sbjct: 34 RLSLTEPDDDDSVLVALMQKNRRKKRKGEDN 64


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.135    0.461 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,075,905
Number of extensions: 45262
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 5
Length of query: 83
Length of database: 6,263,737
Length adjustment: 53
Effective length of query: 30
Effective length of database: 5,118,460
Effective search space: 153553800
Effective search space used: 153553800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)