RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781135|ref|YP_003065548.1| hypothetical protein
CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)



>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like
           domain, hormone/growth factor/membrane protein complex;
           HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1
          Length = 145

 Score = 24.8 bits (54), Expect = 5.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 54  VYFSYGWFFKNRQWYIA 70
            Y S+ W    RQ Y+A
Sbjct: 100 TYASFNWQHNGRQMYVA 116


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.1 bits (52), Expect = 6.9
 Identities = 19/126 (15%), Positives = 27/126 (21%), Gaps = 83/126 (65%)

Query: 6   WVTFQYTTPDKTFLIALNGQDERQIYNGNNCKS---SLLPIIC----------------- 45
           W+     TPDK +L+                 S   S  P+I                  
Sbjct: 218 WLENPSNTPDKDYLL-----------------SIPIS-CPLIGVIQLAHYVVTAKLLGFT 259

Query: 46  -----------AGHNQNNPVYFSYG------------W--FFKNRQW------YIASDSM 74
                       GH+Q        G            W  FF + +       +I     
Sbjct: 260 PGELRSYLKGATGHSQ--------GLVTAVAIAETDSWESFFVSVRKAITVLFFI----- 306

Query: 75  DAWTCQ 80
               C 
Sbjct: 307 -GVRCY 311


>2gl6_A Creatine kinase; non-protein kinase, ADP, structural genomics,
           structural genomics consortium, SGC, transferase; HET:
           ADP; 2.30A {Homo sapiens} PDB: 1crk_A 1qk1_A
          Length = 392

 Score = 24.1 bits (52), Expect = 7.4
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 11  YTTPDKTFLIALNGQDERQI---YNGNNCKSSLLPIICAGHNQNNPVYFSYGWFF 62
           +   DKTFLI +N +D  ++     G N K  +    C G  +   +    GW F
Sbjct: 228 WHNYDKTFLIWINEEDHTRVISMEKGGNMK-RVFERFCRGLKEVERLIQERGWEF 281


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.135    0.461 

Gapped
Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 761,668
Number of extensions: 27590
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 9
Length of query: 83
Length of database: 5,693,230
Length adjustment: 51
Effective length of query: 32
Effective length of database: 4,456,786
Effective search space: 142617152
Effective search space used: 142617152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)