BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781136|ref|YP_003065549.1| hypothetical protein
CLIBASIA_05190 [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781136|ref|YP_003065549.1| hypothetical protein CLIBASIA_05190 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040813|gb|ACT57609.1| hypothetical protein CLIBASIA_05190 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 114

 Score =  229 bits (585), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIMRGG 60
           MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIMRGG
Sbjct: 1   MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIMRGG 60

Query: 61  CRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATVCVCRE 114
           CRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATVCVCRE
Sbjct: 61  CRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATVCVCRE 114


>gi|315122528|ref|YP_004063017.1| hypothetical protein CKC_03900 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495930|gb|ADR52529.1| hypothetical protein CKC_03900 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 532

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 64/114 (56%), Positives = 84/114 (73%), Gaps = 3/114 (2%)

Query: 1   MSQFLRNQYFDSNNLSGE---YISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIM 57
           MS  ++N+Y +  N+  E   + S +  NFL+FP   QQL++N   +L NFWPT+ GP +
Sbjct: 1   MSYLMKNRYHNQKNIGTEQSSFFSREQHNFLHFPVGTQQLEDNISCVLRNFWPTSNGPSI 60

Query: 58  RGGCRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATVCV 111
           RGGCR+ICTL+  S+IISAFSY SS+QQR+FLANHREIYDVT+AS MQ A  C+
Sbjct: 61  RGGCRRICTLNHRSNIISAFSYCSSSQQRIFLANHREIYDVTNASLMQPAIRCL 114


>gi|227822437|ref|YP_002826409.1| hypothetical protein NGR_c18920 [Sinorhizobium fredii NGR234]
 gi|227341438|gb|ACP25656.1| hypothetical protein NGR_c18920 [Sinorhizobium fredii NGR234]
          Length = 536

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 43  SILHNFWPTTKGPIMRGGCRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDV 98
           ++L NF PT  G  +RGG RK+       +I SAF Y+    +++F+A    IY++
Sbjct: 51  TVLTNFLPTLAGCKIRGGSRKVGLAADGGAIRSAFKYKFGNNEKLFMATATAIYNM 106


>gi|150397022|ref|YP_001327489.1| hypothetical protein Smed_1819 [Sinorhizobium medicae WSM419]
 gi|150028537|gb|ABR60654.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 538

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 38  QENAFSILHNFWPTTKGPIMRGGCRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYD 97
           Q  + ++L NF+PT  G  +RGG ++         I SAF Y+  + +++F+A +  IY+
Sbjct: 48  QPGSATVLRNFFPTLMGCKIRGGSQRKGLAADGGDIRSAFKYKYGSNEKLFMATNAGIYN 107

Query: 98  V 98
           +
Sbjct: 108 M 108


>gi|316933870|ref|YP_004108852.1| hypothetical protein Rpdx1_2528 [Rhodopseudomonas palustris DX-1]
 gi|315601584|gb|ADU44119.1| hypothetical protein Rpdx1_2528 [Rhodopseudomonas palustris DX-1]
          Length = 558

 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 39  ENAFSILHNFWPTTKGPIMRGGCRKICTL--DSNSSIISAFSYRSSTQQRVFLANHREIY 96
           + AF +L NF+P   G  MR G      +  D +  ++S FSY +    ++F A   +IY
Sbjct: 47  QGAF-VLDNFFPEATGLRMRRGSESYAQVGADGSQPVLSLFSYINGANAKLFAATATDIY 105

Query: 97  DVTDAS 102
           DV+  +
Sbjct: 106 DVSSPA 111


>gi|13470677|ref|NP_102246.1| hypothetical protein mll0452 [Mesorhizobium loti MAFF303099]
 gi|14021419|dbj|BAB48032.1| mll0452 [Mesorhizobium loti MAFF303099]
          Length = 528

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 44  ILHNFWPTTKGPIMRGGCRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASS 103
           +L N++PT+ G  +RGG  +  T+ +   ++S  SY       +F A+   I+DVT  +S
Sbjct: 46  VLENWFPTSTGIRLRGGAARHATIGT-IPVVSMMSYDGPAGSFMFAADGTNIFDVTTPAS 104


>gi|110632595|ref|YP_672803.1| hypothetical protein Meso_0234 [Mesorhizobium sp. BNC1]
 gi|110283579|gb|ABG61638.1| hypothetical protein Meso_0234 [Chelativorans sp. BNC1]
          Length = 632

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 44  ILHNFWPTTKGPIMRGGCRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVT 99
           +L NF+PT  G I+R G +K   L   + + S F Y     + +F +    IYDVT
Sbjct: 47  VLENFFPTATGAILRRGRQKHAELP--TEVRSLFKYVVGNNRHLFASTVTTIYDVT 100


>gi|257092814|ref|YP_003166455.1| NTPase (NACHT family)-like protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045338|gb|ACV34526.1| NTPase (NACHT family)-like protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1416

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 50  PTTKGPIMRGGCRKICTLDSNSSIISAFSYRSSTQQRVFLA 90
           P TK  I R GCR +    S S + +AF  R ST QR+ +A
Sbjct: 258 PATKQEIFRQGCRLLADELSQSRLQAAFRGRLSTDQRLAIA 298


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.320    0.130    0.386 

Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,080,231,017
Number of Sequences: 14124377
Number of extensions: 41049744
Number of successful extensions: 75322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 75316
Number of HSP's gapped (non-prelim): 8
length of query: 114
length of database: 4,842,793,630
effective HSP length: 81
effective length of query: 33
effective length of database: 3,698,719,093
effective search space: 122057730069
effective search space used: 122057730069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)