RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781136|ref|YP_003065549.1| hypothetical protein
CLIBASIA_05190 [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)



>gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme.  This enzyme is
           involved in the biosynthesis of the thiamine precursor
           thiazole, and is repressed by thiamine.This family
           includes c-thi1, a Citrus gene induced during natural
           and ethylene induced fruit maturation and is highly
           homologous to plant and yeast thi genes involved in
           thiamine biosynthesis.
          Length = 254

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 11/56 (19%), Positives = 18/56 (32%)

Query: 54  GPIMRGGCRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATV 109
             I+    +KI   D    +    S  +   +     N RE+      + M  A V
Sbjct: 170 AEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAV 225


>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
           P-type ATPase.  The calcium P-type ATPases have been
           characterized as Type IIA based on a phylogenetic
           analysis which distinguishes this group from the Type
           IIB PMCA calcium pump modelled by TIGR01517. A separate
           analysis divides Type IIA into sub-types, SERCA and PMR1
           the former of which is modelled by TIGR01116.
          Length = 884

 Score = 24.8 bits (54), Expect = 4.6
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 61  CRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATVC 110
             KI T D   ++++A S     +  V        Y V  +  +++  +C
Sbjct: 342 VTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLC 391


>gnl|CDD|119131 pfam10611, DUF2469, Protein of unknown function (DUF2469).
          Member proteins often found in Actinomycetes clustered
          with signal peptidase and/or RNAse-HII.
          Length = 101

 Score = 25.1 bits (55), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 73 IISAFSYRSSTQQRVFLANHREI 95
          ++  FSY   T++R +LAN  ++
Sbjct: 24 VVGLFSYVVETERRFYLANSVDL 46


>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
           Provisional.
          Length = 245

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 87  VFLANHREIYD-VTDASSMQSATVCVCRE 114
           +++ANH+  YD VT ++ +Q  TV V ++
Sbjct: 68  IYIANHQNNYDMVTASNIVQPPTVTVGKK 96


>gnl|CDD|183257 PRK11649, PRK11649, putative peptidase; Provisional.
          Length = 439

 Score = 24.2 bits (53), Expect = 7.6
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 12/50 (24%)

Query: 7   NQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPI 56
            +++D N       S   + FL FPT KQ      F I  NF P    P+
Sbjct: 269 GKFYDRNG------SGLAKGFLRFPTAKQ------FRISSNFNPRRLNPV 306


>gnl|CDD|119073 pfam10553, MSV199, MSV199 domain.  This domain was identified by
          Iyer and colleagues.
          Length = 135

 Score = 24.2 bits (53), Expect = 8.9
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 14 NLSGEYISSKDQNFLYFPTEKQQLQENAFSILHN 47
          N S  +I++    ++ +  E +  ++N   IL  
Sbjct: 29 NNSNVHITTSILEWIGYEGEFRNQKKNFKKILKR 62


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,644,648
Number of extensions: 81357
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 18
Length of query: 114
Length of database: 5,994,473
Length adjustment: 79
Effective length of query: 35
Effective length of database: 4,287,441
Effective search space: 150060435
Effective search space used: 150060435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)