RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781136|ref|YP_003065549.1| hypothetical protein
CLIBASIA_05190 [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)



>2z8l_A Exotoxin 3; OB fold, B-grAsp, sugar binding protein; HET:
          SIA NAG GAL FUC; 1.65A {Staphylococcus aureus}
          (A:28-105)
          Length = 78

 Score = 24.7 bits (54), Expect = 4.5
 Identities = 5/30 (16%), Positives = 14/30 (46%)

Query: 9  YFDSNNLSGEYISSKDQNFLYFPTEKQQLQ 38
            +  N++G   S   +++L F   ++  +
Sbjct: 2  SKELKNVTGYRYSKGGKHYLIFDKHQKFTR 31


>2gjv_A Putative cytoplasmic protein; structural genomics, unknown
          function, PSI, protein structure initiative; 2.39A
          {Salmonella typhimurium} (A:)
          Length = 175

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 5/41 (12%)

Query: 7  NQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHN 47
          N YF SN +    +     N L     ++   +    I   
Sbjct: 17 NLYFQSNAMETLSVIHTVANRL-----RELNPDMDIHISST 52


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 24.1 bits (52), Expect = 6.1
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 14/57 (24%)

Query: 15  LSGEYISSKDQNFLYFPTE---------KQQLQENAFSILHNFW---PTTKGPIMRG 59
           L  E      ++   F  E         + QL+       ++F+   P    P+ RG
Sbjct: 51  LKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRI-APL-RG 105


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 756,284
Number of extensions: 25909
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 5
Length of query: 114
Length of database: 4,956,049
Length adjustment: 68
Effective length of query: 46
Effective length of database: 2,657,309
Effective search space: 122236214
Effective search space used: 122236214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)