RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781136|ref|YP_003065549.1| hypothetical protein CLIBASIA_05190 [Candidatus Liberibacter asiaticus str. psy62] (114 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 31.8 bits (72), Expect = 0.039 Identities = 25/149 (16%), Positives = 40/149 (26%), Gaps = 65/149 (43%) Query: 18 EYISSKDQ-NFLYFPTEKQQLQENAFSI-LHN----FWPTTKGPIM--RGGC---RKI-- 64 +Y+ ++ N + P KQ I L N + GP G RK Sbjct: 351 DYV---NKTN-SHLPAGKQ------VEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKA 398 Query: 65 -CTLDSNSSI---------------ISA-F--SYRSSTQQRV---FLANHREI------- 95 LD S I +++ F + + N+ Sbjct: 399 PSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457 Query: 96 --YDVTDASSMQ--------SATVCVCRE 114 YD D S ++ C+ R Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRL 486 >1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 633 Score = 28.8 bits (64), Expect = 0.33 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 14/110 (12%) Query: 2 SQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQ-------QLQENAFSILHNFWPTTKG 54 ++R D +N+SG ++ T L+E+A I+ Sbjct: 119 VYYMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIY 178 Query: 55 PIMRGGCRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSM 104 + R G I I + Q +V + T Sbjct: 179 RLDRLGIPLI-------EISTTPDIHHPEQAKVVAKFIGDALRATKKVKR 221 >2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A Length = 418 Score = 25.3 bits (54), Expect = 3.5 Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 2/56 (3%) Query: 1 MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPI 56 + Y L +++ + Q+ + A +++ +P I Sbjct: 67 KGREEGQHYRQLGLLQAGCPTAES--IYVRASPLQRTRATAQALVDGAFPGCGVAI 120 >3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A* Length = 342 Score = 24.8 bits (53), Expect = 4.8 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 1 MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIM 57 + LR +Y D L E+ + L + + +A S+L +P GP++ Sbjct: 51 LGLQLRKRYIDKFGLLPEHYVDQSIYVLS--SHTNRTVVSAQSLLMGLYPAGTGPLI 105 >1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A* Length = 747 Score = 24.6 bits (53), Expect = 5.0 Identities = 6/32 (18%), Positives = 13/32 (40%) Query: 65 CTLDSNSSIISAFSYRSSTQQRVFLANHREIY 96 C ++ ++Y T+ + N E+Y Sbjct: 716 CGVEVAEPNFEDYTYGRGTRINKKMTNSDEVY 747 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.130 0.386 Gapped Lambda K H 0.267 0.0481 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 858,299 Number of extensions: 30358 Number of successful extensions: 72 Number of sequences better than 10.0: 1 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 6 Length of query: 114 Length of database: 5,693,230 Length adjustment: 77 Effective length of query: 37 Effective length of database: 3,826,442 Effective search space: 141578354 Effective search space used: 141578354 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.6 bits)