RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781136|ref|YP_003065549.1| hypothetical protein
CLIBASIA_05190 [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.8 bits (72), Expect = 0.039
 Identities = 25/149 (16%), Positives = 40/149 (26%), Gaps = 65/149 (43%)

Query: 18  EYISSKDQ-NFLYFPTEKQQLQENAFSI-LHN----FWPTTKGPIM--RGGC---RKI-- 64
           +Y+   ++ N  + P  KQ        I L N       +  GP     G     RK   
Sbjct: 351 DYV---NKTN-SHLPAGKQ------VEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKA 398

Query: 65  -CTLDSNSSI---------------ISA-F--SYRSSTQQRV---FLANHREI------- 95
              LD  S I               +++ F           +    + N+          
Sbjct: 399 PSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457

Query: 96  --YDVTDASSMQ--------SATVCVCRE 114
             YD  D S ++            C+ R 
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRL 486


>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
           asparaginase 1 family, GATD subfamily, lyase; 3.00A
           {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
          Length = 633

 Score = 28.8 bits (64), Expect = 0.33
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 14/110 (12%)

Query: 2   SQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQ-------QLQENAFSILHNFWPTTKG 54
             ++R    D +N+SG   ++         T           L+E+A  I+         
Sbjct: 119 VYYMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIY 178

Query: 55  PIMRGGCRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSM 104
            + R G   I        I +        Q +V      +    T     
Sbjct: 179 RLDRLGIPLI-------EISTTPDIHHPEQAKVVAKFIGDALRATKKVKR 221


>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
           pneumoniae} PDB: 2wni_A 2wu0_A
          Length = 418

 Score = 25.3 bits (54), Expect = 3.5
 Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 1   MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPI 56
             +     Y     L     +++        +  Q+ +  A +++   +P     I
Sbjct: 67  KGREEGQHYRQLGLLQAGCPTAES--IYVRASPLQRTRATAQALVDGAFPGCGVAI 120


>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
           tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
           3it1_A* 3it2_A 2p36_A*
          Length = 342

 Score = 24.8 bits (53), Expect = 4.8
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 1   MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIM 57
           +   LR +Y D   L  E+   +    L   +   +   +A S+L   +P   GP++
Sbjct: 51  LGLQLRKRYIDKFGLLPEHYVDQSIYVLS--SHTNRTVVSAQSLLMGLYPAGTGPLI 105


>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein,
           topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A
           {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB:
           1rky_A* 1n9e_A*
          Length = 747

 Score = 24.6 bits (53), Expect = 5.0
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 65  CTLDSNSSIISAFSYRSSTQQRVFLANHREIY 96
           C ++        ++Y   T+    + N  E+Y
Sbjct: 716 CGVEVAEPNFEDYTYGRGTRINKKMTNSDEVY 747


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0481    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 858,299
Number of extensions: 30358
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 6
Length of query: 114
Length of database: 5,693,230
Length adjustment: 77
Effective length of query: 37
Effective length of database: 3,826,442
Effective search space: 141578354
Effective search space used: 141578354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)