Query gi|254781137|ref|YP_003065550.1| hypothetical protein CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 195
No_of_seqs 27 out of 29
Neff 4.7
Searched_HMMs 33803
Date Wed Jun 1 22:09:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781137.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2fqx_A Membrane lipoprotein T 27.2 45 0.0013 14.8 2.7 37 6-42 67-103 (137)
2 >1m98_A Orange carotenoid prot 23.2 21 0.00063 16.7 0.1 50 25-74 75-139 (179)
3 >3hvm_A Agmatine deiminase; hy 21.1 49 0.0014 14.6 1.6 27 168-194 25-51 (59)
4 >2dky_A RHO-GTPase-activating 19.9 50 0.0015 14.6 1.5 16 164-179 27-43 (91)
5 >1byk_A Protein (trehalose ope 19.7 63 0.0019 14.0 2.0 33 10-42 66-98 (125)
6 >1zbr_A AAQ65385, conserved hy 19.3 43 0.0013 14.9 1.0 27 168-194 25-51 (59)
7 >3dbi_A Sugar-binding transcri 17.5 72 0.0021 13.7 1.8 25 17-41 78-102 (133)
8 >3brq_A HTH-type transcription 17.5 72 0.0021 13.7 2.2 25 17-41 78-102 (133)
9 >1s4x_A Integrin beta-3; cell 16.5 50 0.0015 14.6 0.8 31 157-189 13-43 (67)
10 >2ewo_A Putative agmatine deim 16.2 68 0.002 13.8 1.5 28 168-195 25-52 (133)
No 1
>>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:110-246)
Probab=27.23 E-value=45 Score=14.84 Aligned_cols=37 Identities=5% Similarity=-0.085 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999819888631113899889999999999999
Q gi|254781137|r 6 ILNTVCDLVGLSRFETVYQNQDESTVLLVSFLQQAGE 42 (195)
Q Consensus 6 iiq~v~~~igl~~P~aV~~stDp~~~qllal~~~~g~ 42 (195)
..+.+...+.-..|++|+.++|..++..+..+++.|.
T Consensus 67 ~~~~~~~~~~~~~~~ai~~~~D~~A~g~~~al~~~g~ 103 (137)
T 2fqx_A 67 KGQALAAKLYDSGVNVIFQVAGGTGNGVIKEARDRRL 103 (137)
T ss_dssp HHHHHHHHHHHTTCCEEEEECGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 8999999986269979997478866169999998751
No 2
>>1m98_A Orange carotenoid protein; carotenoid binding protein, unknown function; HET: SUC HEQ; 2.10A {Arthrospira maxima} (A:1-179)
Probab=23.19 E-value=21 Score=16.74 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHH------------HHCCC--CCCCCCCHHHHHHC
Q ss_conf 899889999999999999999725-8046766------------54034--56677885665323
Q gi|254781137|r 25 NQDESTVLLVSFLQQAGEEICLKV-DWPQLLQ------------EIKID--HWPFHLPQDYYRPL 74 (195)
Q Consensus 25 stDp~~~qllal~~~~g~el~~~~-dW~~l~~------------e~t~~--~~~~~lP~Dy~R~v 74 (195)
|.+++..-|++|+++..-+|.|.| -|..-.| +-++. +..|+|+.+-+.++
T Consensus 75 s~~EQlq~MrDL~~~~dt~isR~Y~~ls~n~KL~fWY~Lae~M~~G~VipiP~~YqlS~~a~~vl 139 (179)
T 1m98_A 75 TPLQQTQAMCDLANRTDTPICRTYASWSPNIKLGFWYELGRFMDQGLVAPIPEGYKLSANANAIL 139 (179)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCCCCTTCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH
T ss_conf 99999999999983789777788740688624589999998850782873798887687899999
No 3
>>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori J99} PDB: 2cmu_A (A:140-198)
Probab=21.09 E-value=49 Score=14.63 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 716999799999999998552433037
Q gi|254781137|r 168 RAQGLSFDDCLREFDLALIAEKILWLG 194 (195)
Q Consensus 168 raKGldY~e~l~~Ye~al~qek~~~~~ 194 (195)
|+-++.=++--+++...|-.+|++||.
T Consensus 25 RNp~lt~~~ie~~L~~~lG~~kviWL~ 51 (59)
T 3hvm_A 25 RNPHLNQNGIETMLKKELGAKQVLWYS 51 (59)
T ss_dssp TSTTSCHHHHHHHHHHHHCCSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 387879999999999974997699967
No 4
>>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=19.88 E-value=50 Score=14.59 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=8.0
Q ss_pred HHHHHHCCCC-HHHHHH
Q ss_conf 9998716999-799999
Q gi|254781137|r 164 WRWRRAQGLS-FDDCLR 179 (195)
Q Consensus 164 WRwkraKGld-Y~e~l~ 179 (195)
-.|.|+-||+ |++-+.
T Consensus 27 C~WLraaGFpqYAqlyE 43 (91)
T 2dky_A 27 CDWLRATGFPQYAQLYE 43 (91)
T ss_dssp HHHHHHHTCTTHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
T ss_conf 99999838848999865
No 5
>>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223)
Probab=19.66 E-value=63 Score=13.98 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=22.4
Q ss_pred HHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 999819888631113899889999999999999
Q gi|254781137|r 10 VCDLVGLSRFETVYQNQDESTVLLVSFLQQAGE 42 (195)
Q Consensus 10 v~~~igl~~P~aV~~stDp~~~qllal~~~~g~ 42 (195)
...+...+.|++++.++|..+.-++..+++.|-
T Consensus 66 ~~~~~~~~~~~ai~~~~d~~A~~~~~~l~~~gp 98 (125)
T 1byk_A 66 NVAKVITPETTALLCATDTLALGASKYLQEQRI 98 (125)
T ss_dssp HSGGGCCTTCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCEECCCCHHHHHHHHHHHHHCCC
T ss_conf 999971356760011324667568999976086
No 6
>>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Porphyromonas gingivalis W83} (A:146-204)
Probab=19.26 E-value=43 Score=14.94 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 716999799999999998552433037
Q gi|254781137|r 168 RAQGLSFDDCLREFDLALIAEKILWLG 194 (195)
Q Consensus 168 raKGldY~e~l~~Ye~al~qek~~~~~ 194 (195)
|+-+++-++--+.+-..|-.+|++||.
T Consensus 25 RNp~ls~~~ie~~L~~~lG~~kviWL~ 51 (59)
T 1zbr_A 25 RNAGLSRTAIIDTLKESLGVSRVLSLR 51 (59)
T ss_dssp TSTTSCHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 788756789999999861976478606
No 7
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296)
Probab=17.46 E-value=72 Score=13.65 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=0.0
Q ss_pred CCCCEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8863111389988999999999999
Q gi|254781137|r 17 SRFETVYQNQDESTVLLVSFLQQAG 41 (195)
Q Consensus 17 ~~P~aV~~stDp~~~qllal~~~~g 41 (195)
+.|++++.++|..+..++..+++.|
T Consensus 78 ~~~~ai~~~~d~~a~~~~~~l~~~g 102 (133)
T 3dbi_A 78 AKFSALVASNDDXAIGAXKALHERG 102 (133)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 8864999678999999999999759
No 8
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254)
Probab=17.46 E-value=72 Score=13.65 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=0.0
Q ss_pred CCCCEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8863111389988999999999999
Q gi|254781137|r 17 SRFETVYQNQDESTVLLVSFLQQAG 41 (195)
Q Consensus 17 ~~P~aV~~stDp~~~qllal~~~~g 41 (195)
+.|++++.++|..+..++..+++.|
T Consensus 78 ~~~~ai~~~~d~~a~~~~~~l~~~g 102 (133)
T 3brq_A 78 AKFSALVASNDDXAIGAXKALHERG 102 (133)
T ss_dssp -CCSEEEESSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHEHHHHHCC
T ss_conf 9987223588088842244366549
No 9
>>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} (A:)
Probab=16.51 E-value=50 Score=14.58 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 998678999987169997999999999985524
Q gi|254781137|r 157 LLIKDIIWRWRRAQGLSFDDCLREFDLALIAEK 189 (195)
Q Consensus 157 Ll~LgliWRwkraKGldY~e~l~~Ye~al~qek 189 (195)
++.+|||||.+.. +.=.-|++.||++....|
T Consensus 13 ivlIgLiwKll~~--i~DrREyakFEkEr~~ak 43 (67)
T 1s4x_A 13 LVPRGSHMKLLIT--IHDRKEFAKFEEERARAK 43 (67)
T ss_dssp --------CHHHH--HHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCEEEEEE--EEEHHHHHHHHHHHHHCC
T ss_conf 4437763589998--530899999999998767
No 10
>>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} (A:161-293)
Probab=16.17 E-value=68 Score=13.77 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7169997999999999985524330379
Q gi|254781137|r 168 RAQGLSFDDCLREFDLALIAEKILWLGG 195 (195)
Q Consensus 168 raKGldY~e~l~~Ye~al~qek~~~~~~ 195 (195)
|+.|+.-++--.++...|--+|++||-|
T Consensus 25 RNp~~s~~~ie~~L~~~lGv~kviwl~~ 52 (133)
T 2ewo_A 25 RNPHLTKEDIEDKLKDYLNCVKVLWVKD 52 (133)
T ss_dssp SCTTSCHHHHHHHHHHHHCCSEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHCCEEEEEECC
T ss_conf 8999899999999999739827997347
Done!