Query         gi|254781137|ref|YP_003065550.1| hypothetical protein CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 195
No_of_seqs    27 out of 29
Neff          4.7 
Searched_HMMs 23785
Date          Wed Jun  1 01:08:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781137.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2gjv_A Putative cytoplasmic pr  24.7      32  0.0013   14.8   2.0   17   61-77     72-88  (175)
  2 2l1s_A Uncharacterized protein  22.4      39  0.0016   14.3   3.9   27  107-133    54-80  (83)
  3 3mg1_A OCP, orange carotenoid   22.1      15 0.00061   16.8  -0.1   51   25-75     75-140 (323)
  4 2dky_A RHO-GTPase-activating p  21.5      31  0.0013   14.9   1.5   17  164-180    27-44  (91)
  5 1rcu_A Conserved hypothetical   18.4      44  0.0019   14.0   1.7   34   17-51     23-60  (195)
  6 2k53_A A3DK08 protein; NESG, C  17.6      50  0.0021   13.7   2.8   29  163-191    41-69  (76)
  7 2al3_A TUG long isoform; TUG U  14.1      62  0.0026   13.1   2.4   16    1-16     30-45  (90)
  8 1w8x_P Protein P16, protein S,  12.5      69  0.0029   12.9   1.9   11  173-183   102-112 (117)
  9 2h80_A STAR-related lipid tran  12.4      30  0.0013   15.0  -0.4   14  164-177    25-39  (81)
 10 3gpk_A PPIC-type peptidyl-prol  10.0      84  0.0035   12.4   2.7   52   23-74     15-77  (112)

No 1  
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=24.70  E-value=32  Score=14.84  Aligned_cols=17  Identities=12%  Similarity=0.028  Sum_probs=10.4

Q ss_pred             CCCCCCCHHHHHHCCCC
Q ss_conf             56677885665323664
Q gi|254781137|r   61 HWPFHLPQDYYRPLLGG   77 (195)
Q Consensus        61 ~~~~~lP~Dy~R~v~~~   77 (195)
                      ++-|.-|.|-+..++.-
T Consensus        72 GS~F~~p~d~~aivQ~R   88 (175)
T 2gjv_A           72 GSVFAEPENTDATVQKQ   88 (175)
T ss_dssp             EEEECCCCSCSSCEEEE
T ss_pred             CCCCCCCCCCCCCCEEE
T ss_conf             87657855677414267


No 2  
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-2, Pro structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=22.43  E-value=39  Score=14.29  Aligned_cols=27  Identities=7%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CEEECCCEEEECCCCCEEEEEECCCCE
Q ss_conf             178457433335897506886113612
Q gi|254781137|r  107 WYWIDGRMIHLSINSPATFRYFSKNWI  133 (195)
Q Consensus       107 ~~~i~g~~~~~~~~~~~~feYiSknWv  133 (195)
                      |.+++++.+++....+.+..-+|.++.
T Consensus        54 Wvrv~~dyvLV~~~tG~I~~i~~G~i~   80 (83)
T 2l1s_A           54 WTYMGGNYVLITDTEGKILKVYDGEIF   80 (83)
T ss_dssp             EEECSSEEEEEETTTCBEEEEEEGGGG
T ss_pred             EEEECCEEEEEECCCCEEEEEEECEEE
T ss_conf             599899899998689959999804287


No 3  
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=22.10  E-value=15  Score=16.82  Aligned_cols=51  Identities=12%  Similarity=0.219  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHH------------HHCCC--CCCCCCCHHHHHHCC
Q ss_conf             899889999999999999999725-8046766------------54034--566778856653236
Q gi|254781137|r   25 NQDESTVLLVSFLQQAGEEICLKV-DWPQLLQ------------EIKID--HWPFHLPQDYYRPLL   75 (195)
Q Consensus        25 stDp~~~qllal~~~~g~el~~~~-dW~~l~~------------e~t~~--~~~~~lP~Dy~R~v~   75 (195)
                      |.++|..-|++|++++.-+|.|.| -|..-.|            +-+..  +..|+|+.+-+.++.
T Consensus        75 s~eEQlq~MRDL~n~~dT~IsR~Yg~ls~ntKL~fWY~Lae~M~~G~VipvP~~YqLS~~a~~vl~  140 (323)
T 3mg1_A           75 GPLQQTQAMCDLANRADTPLCRTYASWSPNIKLGFWYRLGELMEQGFVAPIPAGYQLSANANAVLA  140 (323)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHTBCHHHHHHHHHHHHHHHHHTSSCCSCTTCCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
T ss_conf             999999999999837897777787516886334899999988507937617988876878999999


No 4  
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=21.49  E-value=31  Score=14.91  Aligned_cols=17  Identities=24%  Similarity=0.669  Sum_probs=8.8

Q ss_pred             HHHHHHCCCC-HHHHHHH
Q ss_conf             9998716999-7999999
Q gi|254781137|r  164 WRWRRAQGLS-FDDCLRE  180 (195)
Q Consensus       164 WRwkraKGld-Y~e~l~~  180 (195)
                      -.|.|+-||+ |++-+.+
T Consensus        27 C~WLRaaGFpqYAqlyEd   44 (91)
T 2dky_A           27 CDWLRATGFPQYAQLYED   44 (91)
T ss_dssp             HHHHHHHTCTTHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHH
T ss_conf             999998288489998650


No 5  
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=18.41  E-value=44  Score=13.99  Aligned_cols=34  Identities=12%  Similarity=0.044  Sum_probs=26.0

Q ss_pred             CCCCEEECCC----CHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             8863111389----9889999999999999999725804
Q gi|254781137|r   17 SRFETVYQNQ----DESTVLLVSFLQQAGEEICLKVDWP   51 (195)
Q Consensus        17 ~~P~aV~~st----Dp~~~qllal~~~~g~el~~~~dW~   51 (195)
                      .+-.+||+++    ++...++..++.+.|+.|+++. |-
T Consensus        23 ~~~i~v~~~~~~~~~~~~~~~~~~a~elG~~La~~G-~~   60 (195)
T 1rcu_A           23 MKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKG-YL   60 (195)
T ss_dssp             CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTT-CE
T ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC-CE
T ss_conf             647989974489999955899999999999999879-99


No 6  
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=17.59  E-value=50  Score=13.67  Aligned_cols=29  Identities=17%  Similarity=0.247  Sum_probs=23.7

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99998716999799999999998552433
Q gi|254781137|r  163 IWRWRRAQGLSFDDCLREFDLALIAEKIL  191 (195)
Q Consensus       163 iWRwkraKGldY~e~l~~Ye~al~qek~~  191 (195)
                      +-.=-+.||+|-++-+.+-+.+++++|++
T Consensus        41 L~eaa~~~gid~~~ll~eLn~~i~~~e~~   69 (76)
T 2k53_A           41 IEDACAVHGIDADKLVKELNEYFEKKEVL   69 (76)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999994979999999999999977277


No 7  
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=14.10  E-value=62  Score=13.13  Aligned_cols=16  Identities=19%  Similarity=0.426  Sum_probs=7.2

Q ss_pred             CCHHHHHHHHHHHCCC
Q ss_conf             9489999999998198
Q gi|254781137|r    1 MNVLAILNTVCDLVGL   16 (195)
Q Consensus         1 MtlLsiiq~v~~~igl   16 (195)
                      |+|+.+++++|...|+
T Consensus        30 ttL~~VL~eaC~k~~l   45 (90)
T 2al3_A           30 TVLLQVLEDTCRRQDF   45 (90)
T ss_dssp             SBHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHCC
T ss_conf             6899999999998199


No 8  
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=12.49  E-value=69  Score=12.85  Aligned_cols=11  Identities=9%  Similarity=0.389  Sum_probs=5.4

Q ss_pred             CHHHHHHHHHH
Q ss_conf             97999999999
Q gi|254781137|r  173 SFDDCLREFDL  183 (195)
Q Consensus       173 dY~e~l~~Ye~  183 (195)
                      ||+..+.+|-.
T Consensus       102 dyasslndyla  112 (117)
T 1w8x_P          102 DYASSLNDYLA  112 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             88988999988


No 9  
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=12.43  E-value=30  Score=14.97  Aligned_cols=14  Identities=29%  Similarity=0.733  Sum_probs=6.8

Q ss_pred             HHHHHHCCCC-HHHH
Q ss_conf             9998716999-7999
Q gi|254781137|r  164 WRWRRAQGLS-FDDC  177 (195)
Q Consensus       164 WRwkraKGld-Y~e~  177 (195)
                      -.|.|+-||+ |++-
T Consensus        25 C~WLRaaGFpqYAql   39 (81)
T 2h80_A           25 CDWLRAAGFPQYAQL   39 (81)
T ss_dssp             HHHHHHTTCHHHHHT
T ss_pred             HHHHHHCCCHHHHHH
T ss_conf             999998388489998


No 10 
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444}
Probab=10.05  E-value=84  Score=12.37  Aligned_cols=52  Identities=8%  Similarity=0.033  Sum_probs=35.5

Q ss_pred             ECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC-----------CCCCCHHHHHHC
Q ss_conf             1389988999999999999999972580467665403456-----------677885665323
Q gi|254781137|r   23 YQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQEIKIDHW-----------PFHLPQDYYRPL   74 (195)
Q Consensus        23 ~~stDp~~~qllal~~~~g~el~~~~dW~~l~~e~t~~~~-----------~~~lP~Dy~R~v   74 (195)
                      ++.++.+..+....+++.-++|..-.++.++.+++.-++.           ..++|++|...+
T Consensus        15 i~~~~~~~~~~~~~a~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lGw~~~~~l~~~f~~~~   77 (112)
T 3gpk_A           15 LAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTA   77 (112)
T ss_dssp             EECCGGGHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHCCHHHHHHH
T ss_conf             828943579999999999999887999999999968001322188677435312698999999


Done!