Query gi|254781137|ref|YP_003065550.1| hypothetical protein CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 195 No_of_seqs 27 out of 29 Neff 4.7 Searched_HMMs 23785 Date Wed Jun 1 01:08:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781137.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2gjv_A Putative cytoplasmic pr 24.7 32 0.0013 14.8 2.0 17 61-77 72-88 (175) 2 2l1s_A Uncharacterized protein 22.4 39 0.0016 14.3 3.9 27 107-133 54-80 (83) 3 3mg1_A OCP, orange carotenoid 22.1 15 0.00061 16.8 -0.1 51 25-75 75-140 (323) 4 2dky_A RHO-GTPase-activating p 21.5 31 0.0013 14.9 1.5 17 164-180 27-44 (91) 5 1rcu_A Conserved hypothetical 18.4 44 0.0019 14.0 1.7 34 17-51 23-60 (195) 6 2k53_A A3DK08 protein; NESG, C 17.6 50 0.0021 13.7 2.8 29 163-191 41-69 (76) 7 2al3_A TUG long isoform; TUG U 14.1 62 0.0026 13.1 2.4 16 1-16 30-45 (90) 8 1w8x_P Protein P16, protein S, 12.5 69 0.0029 12.9 1.9 11 173-183 102-112 (117) 9 2h80_A STAR-related lipid tran 12.4 30 0.0013 15.0 -0.4 14 164-177 25-39 (81) 10 3gpk_A PPIC-type peptidyl-prol 10.0 84 0.0035 12.4 2.7 52 23-74 15-77 (112) No 1 >2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2 Probab=24.70 E-value=32 Score=14.84 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=10.4 Q ss_pred CCCCCCCHHHHHHCCCC Q ss_conf 56677885665323664 Q gi|254781137|r 61 HWPFHLPQDYYRPLLGG 77 (195) Q Consensus 61 ~~~~~lP~Dy~R~v~~~ 77 (195) ++-|.-|.|-+..++.- T Consensus 72 GS~F~~p~d~~aivQ~R 88 (175) T 2gjv_A 72 GSVFAEPENTDATVQKQ 88 (175) T ss_dssp EEEECCCCSCSSCEEEE T ss_pred CCCCCCCCCCCCCCEEE T ss_conf 87657855677414267 No 2 >2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-2, Pro structure initiative; NMR {Klebsiella pneumoniae subsp} Probab=22.43 E-value=39 Score=14.29 Aligned_cols=27 Identities=7% Similarity=0.417 Sum_probs=24.3 Q ss_pred CEEECCCEEEECCCCCEEEEEECCCCE Q ss_conf 178457433335897506886113612 Q gi|254781137|r 107 WYWIDGRMIHLSINSPATFRYFSKNWI 133 (195) Q Consensus 107 ~~~i~g~~~~~~~~~~~~feYiSknWv 133 (195) |.+++++.+++....+.+..-+|.++. T Consensus 54 Wvrv~~dyvLV~~~tG~I~~i~~G~i~ 80 (83) T 2l1s_A 54 WTYMGGNYVLITDTEGKILKVYDGEIF 80 (83) T ss_dssp EEECSSEEEEEETTTCBEEEEEEGGGG T ss_pred EEEECCEEEEEECCCCEEEEEEECEEE T ss_conf 599899899998689959999804287 No 3 >3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A* Probab=22.10 E-value=15 Score=16.82 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=35.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHH------------HHCCC--CCCCCCCHHHHHHCC Q ss_conf 899889999999999999999725-8046766------------54034--566778856653236 Q gi|254781137|r 25 NQDESTVLLVSFLQQAGEEICLKV-DWPQLLQ------------EIKID--HWPFHLPQDYYRPLL 75 (195) Q Consensus 25 stDp~~~qllal~~~~g~el~~~~-dW~~l~~------------e~t~~--~~~~~lP~Dy~R~v~ 75 (195) |.++|..-|++|++++.-+|.|.| -|..-.| +-+.. +..|+|+.+-+.++. T Consensus 75 s~eEQlq~MRDL~n~~dT~IsR~Yg~ls~ntKL~fWY~Lae~M~~G~VipvP~~YqLS~~a~~vl~ 140 (323) T 3mg1_A 75 GPLQQTQAMCDLANRADTPLCRTYASWSPNIKLGFWYRLGELMEQGFVAPIPAGYQLSANANAVLA 140 (323) T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHTBCHHHHHHHHHHHHHHHHHTSSCCSCTTCCCCHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH T ss_conf 999999999999837897777787516886334899999988507937617988876878999999 No 4 >2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A Probab=21.49 E-value=31 Score=14.91 Aligned_cols=17 Identities=24% Similarity=0.669 Sum_probs=8.8 Q ss_pred HHHHHHCCCC-HHHHHHH Q ss_conf 9998716999-7999999 Q gi|254781137|r 164 WRWRRAQGLS-FDDCLRE 180 (195) Q Consensus 164 WRwkraKGld-Y~e~l~~ 180 (195) -.|.|+-||+ |++-+.+ T Consensus 27 C~WLRaaGFpqYAqlyEd 44 (91) T 2dky_A 27 CDWLRATGFPQYAQLYED 44 (91) T ss_dssp HHHHHHHTCTTHHHHHHT T ss_pred HHHHHHCCCHHHHHHHHH T ss_conf 999998288489998650 No 5 >1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Probab=18.41 E-value=44 Score=13.99 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=26.0 Q ss_pred CCCCEEECCC----CHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 8863111389----9889999999999999999725804 Q gi|254781137|r 17 SRFETVYQNQ----DESTVLLVSFLQQAGEEICLKVDWP 51 (195) Q Consensus 17 ~~P~aV~~st----Dp~~~qllal~~~~g~el~~~~dW~ 51 (195) .+-.+||+++ ++...++..++.+.|+.|+++. |- T Consensus 23 ~~~i~v~~~~~~~~~~~~~~~~~~a~elG~~La~~G-~~ 60 (195) T 1rcu_A 23 MKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKG-YL 60 (195) T ss_dssp CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTT-CE T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC-CE T ss_conf 647989974489999955899999999999999879-99 No 6 >2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405} Probab=17.59 E-value=50 Score=13.67 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=23.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99998716999799999999998552433 Q gi|254781137|r 163 IWRWRRAQGLSFDDCLREFDLALIAEKIL 191 (195) Q Consensus 163 iWRwkraKGldY~e~l~~Ye~al~qek~~ 191 (195) +-.=-+.||+|-++-+.+-+.+++++|++ T Consensus 41 L~eaa~~~gid~~~ll~eLn~~i~~~e~~ 69 (76) T 2k53_A 41 IEDACAVHGIDADKLVKELNEYFEKKEVL 69 (76) T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999994979999999999999977277 No 7 >2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Probab=14.10 E-value=62 Score=13.13 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=7.2 Q ss_pred CCHHHHHHHHHHHCCC Q ss_conf 9489999999998198 Q gi|254781137|r 1 MNVLAILNTVCDLVGL 16 (195) Q Consensus 1 MtlLsiiq~v~~~igl 16 (195) |+|+.+++++|...|+ T Consensus 30 ttL~~VL~eaC~k~~l 45 (90) T 2al3_A 30 TVLLQVLEDTCRRQDF 45 (90) T ss_dssp SBHHHHHHHHHHHTTC T ss_pred CCHHHHHHHHHHHHCC T ss_conf 6899999999998199 No 8 >1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1 Probab=12.49 E-value=69 Score=12.85 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=5.4 Q ss_pred CHHHHHHHHHH Q ss_conf 97999999999 Q gi|254781137|r 173 SFDDCLREFDL 183 (195) Q Consensus 173 dY~e~l~~Ye~ 183 (195) ||+..+.+|-. T Consensus 102 dyasslndyla 112 (117) T 1w8x_P 102 DYASSLNDYLA 112 (117) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 88988999988 No 9 >2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A Probab=12.43 E-value=30 Score=14.97 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=6.8 Q ss_pred HHHHHHCCCC-HHHH Q ss_conf 9998716999-7999 Q gi|254781137|r 164 WRWRRAQGLS-FDDC 177 (195) Q Consensus 164 WRwkraKGld-Y~e~ 177 (195) -.|.|+-||+ |++- T Consensus 25 C~WLRaaGFpqYAql 39 (81) T 2h80_A 25 CDWLRAAGFPQYAQL 39 (81) T ss_dssp HHHHHHTTCHHHHHT T ss_pred HHHHHHCCCHHHHHH T ss_conf 999998388489998 No 10 >3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444} Probab=10.05 E-value=84 Score=12.37 Aligned_cols=52 Identities=8% Similarity=0.033 Sum_probs=35.5 Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC-----------CCCCCHHHHHHC Q ss_conf 1389988999999999999999972580467665403456-----------677885665323 Q gi|254781137|r 23 YQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQEIKIDHW-----------PFHLPQDYYRPL 74 (195) Q Consensus 23 ~~stDp~~~qllal~~~~g~el~~~~dW~~l~~e~t~~~~-----------~~~lP~Dy~R~v 74 (195) ++.++.+..+....+++.-++|..-.++.++.+++.-++. ..++|++|...+ T Consensus 15 i~~~~~~~~~~~~~a~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lGw~~~~~l~~~f~~~~ 77 (112) T 3gpk_A 15 LAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTA 77 (112) T ss_dssp EECCGGGHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHH T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHCCHHHHHHH T ss_conf 828943579999999999999887999999999968001322188677435312698999999 Done!