Query         gi|254781137|ref|YP_003065550.1| hypothetical protein CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 195
No_of_seqs    27 out of 29
Neff          4.7 
Searched_HMMs 13730
Date          Wed Jun  1 11:32:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781137.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1m98a1 a.175.1.1 (A:2-175) Or  24.2     8.1 0.00059   16.9   0.1   50   25-74     74-138 (174)
  2 d2dkya1 a.60.1.3 (A:8-85) Dele  21.2      18  0.0013   14.8   1.5   16  164-179    20-36  (78)
  3 d2al3a1 d.15.1.2 (A:10-85) Tet  14.8      34  0.0025   13.3   2.4   17    1-17     21-37  (76)
  4 d1lw7a2 c.37.1.1 (A:220-411) T  14.0      12 0.00088   15.9  -0.9   12  171-182   164-175 (192)
  5 d1ui5a1 a.4.1.9 (A:5-75) A-fac  11.1      44  0.0032   12.6   2.4   40    7-46     28-69  (71)
  6 d1fvka_ c.47.1.13 (A:) Disulfi   9.6      50  0.0037   12.3   1.9   25   96-120   141-165 (188)
  7 d1qzma_ c.37.1.20 (A:) ATPase    8.6      55   0.004   12.0   1.2   37   38-74      5-41  (94)
  8 d1mqea_ d.113.1.1 (A:) ADP-rib   8.1      58  0.0042   11.9   1.0   10  149-158   141-151 (202)
  9 d2gjva1 d.323.1.2 (A:1-134) Pu   7.7      61  0.0044   11.8   2.0   29    1-29      1-31  (134)
 10 d2nzug1 c.93.1.1 (G:58-332) Gl   7.6      61  0.0045   11.8   1.3   25   17-41    181-205 (275)

No 1  
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=24.19  E-value=8.1  Score=16.92  Aligned_cols=50  Identities=12%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHH------------HHCCC--CCCCCCCHHHHHHC
Q ss_conf             899889999999999999999725-8046766------------54034--56677885665323
Q gi|254781137|r   25 NQDESTVLLVSFLQQAGEEICLKV-DWPQLLQ------------EIKID--HWPFHLPQDYYRPL   74 (195)
Q Consensus        25 stDp~~~qllal~~~~g~el~~~~-dW~~l~~------------e~t~~--~~~~~lP~Dy~R~v   74 (195)
                      |.+++..-|++|+++..-+|.|.| -|..-.|            +-.+.  +..|+|+.+-+.++
T Consensus        74 s~~EQlq~MrDL~~~~dt~isR~Y~~ls~n~KL~fWY~Lae~M~~G~VipvP~~YqlS~~a~~vl  138 (174)
T d1m98a1          74 TPLQQTQAMCDLANRTDTPICRTYASWSPNIKLGFWYELGRFMDQGLVAPIPEGYKLSANANAIL  138 (174)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCCCCTTCCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHH
T ss_conf             99999999999983789788899860588506799999998860782762798887688899999


No 2  
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.17  E-value=18  Score=14.85  Aligned_cols=16  Identities=25%  Similarity=0.654  Sum_probs=8.1

Q ss_pred             HHHHHHCCCC-HHHHHH
Q ss_conf             9998716999-799999
Q gi|254781137|r  164 WRWRRAQGLS-FDDCLR  179 (195)
Q Consensus       164 WRwkraKGld-Y~e~l~  179 (195)
                      -.|.|+-||+ |++-+.
T Consensus        20 C~WLraaGFpqYAqlyE   36 (78)
T d2dkya1          20 CDWLRATGFPQYAQLYE   36 (78)
T ss_dssp             HHHHHHHTCTTHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHH
T ss_conf             99999838848999865


No 3  
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.83  E-value=34  Score=13.25  Aligned_cols=17  Identities=18%  Similarity=0.419  Sum_probs=11.3

Q ss_pred             CCHHHHHHHHHHHCCCC
Q ss_conf             94899999999981988
Q gi|254781137|r    1 MNVLAILNTVCDLVGLS   17 (195)
Q Consensus         1 MtlLsiiq~v~~~igl~   17 (195)
                      |+|+.++++||.-.|++
T Consensus        21 t~l~~VL~eaC~k~~~~   37 (76)
T d2al3a1          21 TVLLQVLEDTCRRQDFN   37 (76)
T ss_dssp             SBHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHCCC
T ss_conf             58999999999981998


No 4  
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=13.96  E-value=12  Score=15.89  Aligned_cols=12  Identities=17%  Similarity=0.182  Sum_probs=4.9

Q ss_pred             CCCHHHHHHHHH
Q ss_conf             999799999999
Q gi|254781137|r  171 GLSFDDCLREFD  182 (195)
Q Consensus       171 GldY~e~l~~Ye  182 (195)
                      |-++.|.+.+-.
T Consensus       164 ~~~~~e~~~~i~  175 (192)
T d1lw7a2         164 SPSYLDRYNQVK  175 (192)
T ss_dssp             CSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
T ss_conf             989999999999


No 5  
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.09  E-value=44  Score=12.58  Aligned_cols=40  Identities=5%  Similarity=0.223  Sum_probs=23.9

Q ss_pred             HHHHHHHCCCCCCCEE--ECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998198886311--138998899999999999999997
Q gi|254781137|r    7 LNTVCDLVGLSRFETV--YQNQDESTVLLVSFLQQAGEEICL   46 (195)
Q Consensus         7 iq~v~~~igl~~P~aV--~~stDp~~~qllal~~~~g~el~~   46 (195)
                      +.++|.+.|+++.+--  |+|-|.-+..++....+..+.+++
T Consensus        28 i~~Ia~~agvs~~~~y~~F~sK~~L~~~~~~~~~~~~~~~~~   69 (71)
T d1ui5a1          28 LSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAK   69 (71)
T ss_dssp             HHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999879487699989829999999999999999999984


No 6  
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=9.60  E-value=50  Score=12.27  Aligned_cols=25  Identities=8%  Similarity=0.110  Sum_probs=18.0

Q ss_pred             HHHHHHHCCCCCEEECCCEEEECCC
Q ss_conf             5555421148717845743333589
Q gi|254781137|r   96 WGIVKRISHTPWYWIDGRMIHLSIN  120 (195)
Q Consensus        96 W~~~~~~~~~p~~~i~g~~~~~~~~  120 (195)
                      .....+++.||.+.|+|+.++-+..
T Consensus       141 ~a~~~gI~gTPt~vInGky~i~~~~  165 (188)
T d1fvka_         141 AAADVQLRGVPAMFVNGKYQLNPQG  165 (188)
T ss_dssp             HHHHTTCCSSSEEEETTTEEECGGG
T ss_pred             HHHHCCCCCCCEEEECCEEEECCCC
T ss_conf             9997198406689998999856655


No 7  
>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]}
Probab=8.65  E-value=55  Score=12.04  Aligned_cols=37  Identities=5%  Similarity=0.063  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHC
Q ss_conf             9999999972580467665403456677885665323
Q gi|254781137|r   38 QQAGEEICLKVDWPQLLQEIKIDHWPFHLPQDYYRPL   74 (195)
Q Consensus        38 ~~~g~el~~~~dW~~l~~e~t~~~~~~~lP~Dy~R~v   74 (195)
                      .++=.+|+++|=+|..+++|++......++.+--+.+
T Consensus         5 ~~EK~~Iak~yLiPk~l~~~gl~~~~i~i~~~~l~~i   41 (94)
T d1qzma_           5 EDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI   41 (94)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             8999999999838899998666521135559999999


No 8  
>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.07  E-value=58  Score=11.89  Aligned_cols=10  Identities=10%  Similarity=-0.001  Sum_probs=3.9

Q ss_pred             CCEECH-HHHH
Q ss_conf             612222-8999
Q gi|254781137|r  149 DSTLLP-TYLL  158 (195)
Q Consensus       149 Dt~~l~-erLl  158 (195)
                      .+..+| +.++
T Consensus       141 ~v~w~~~~e~~  151 (202)
T d1mqea_         141 TMGWYPIAEAA  151 (202)
T ss_dssp             CEEEEEHHHHH
T ss_pred             EEEEEEHHHHH
T ss_conf             99998899999


No 9  
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215 {Salmonella typhimurium [TaxId: 90371]}
Probab=7.66  E-value=61  Score=11.78  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=17.0

Q ss_pred             CCHHHHHHHHHHHCC--CCCCCEEECCCCHH
Q ss_conf             948999999999819--88863111389988
Q gi|254781137|r    1 MNVLAILNTVCDLVG--LSRFETVYQNQDES   29 (195)
Q Consensus         1 MtlLsiiq~v~~~ig--l~~P~aV~~stDp~   29 (195)
                      |..+.||+.++..+.  ++.-..-+...||.
T Consensus         1 m~t~pii~aiv~RL~~~lP~~~ve~fp~~p~   31 (134)
T d2gjva1           1 METLSVIHTVANRLRELNPDMDIHISSTDAK   31 (134)
T ss_dssp             CCHHHHHHHHHHHHHHHCTTEEEECCSSCTT
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf             9616789999999986696765676789877


No 10 
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=7.58  E-value=61  Score=11.76  Aligned_cols=25  Identities=16%  Similarity=0.262  Sum_probs=0.0

Q ss_pred             CCCCEEECCCCHHHHHHHHHHHHHH
Q ss_conf             8863111389988999999999999
Q gi|254781137|r   17 SRFETVYQNQDESTVLLVSFLQQAG   41 (195)
Q Consensus        17 ~~P~aV~~stDp~~~qllal~~~~g   41 (195)
                      +.|++++.++|..++.+...+.+.|
T Consensus       181 ~~~~ai~~~~d~~A~g~~~~l~~~g  205 (275)
T d2nzug1         181 EKPTAIFVGTDEMALGVIHGAQDRG  205 (275)
T ss_dssp             SCCSEEEESSHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf             9971898467477777999876539


Done!