Query gi|254781137|ref|YP_003065550.1| hypothetical protein CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 195 No_of_seqs 27 out of 29 Neff 4.7 Searched_HMMs 13730 Date Wed Jun 1 11:32:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781137.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1m98a1 a.175.1.1 (A:2-175) Or 24.2 8.1 0.00059 16.9 0.1 50 25-74 74-138 (174) 2 d2dkya1 a.60.1.3 (A:8-85) Dele 21.2 18 0.0013 14.8 1.5 16 164-179 20-36 (78) 3 d2al3a1 d.15.1.2 (A:10-85) Tet 14.8 34 0.0025 13.3 2.4 17 1-17 21-37 (76) 4 d1lw7a2 c.37.1.1 (A:220-411) T 14.0 12 0.00088 15.9 -0.9 12 171-182 164-175 (192) 5 d1ui5a1 a.4.1.9 (A:5-75) A-fac 11.1 44 0.0032 12.6 2.4 40 7-46 28-69 (71) 6 d1fvka_ c.47.1.13 (A:) Disulfi 9.6 50 0.0037 12.3 1.9 25 96-120 141-165 (188) 7 d1qzma_ c.37.1.20 (A:) ATPase 8.6 55 0.004 12.0 1.2 37 38-74 5-41 (94) 8 d1mqea_ d.113.1.1 (A:) ADP-rib 8.1 58 0.0042 11.9 1.0 10 149-158 141-151 (202) 9 d2gjva1 d.323.1.2 (A:1-134) Pu 7.7 61 0.0044 11.8 2.0 29 1-29 1-31 (134) 10 d2nzug1 c.93.1.1 (G:58-332) Gl 7.6 61 0.0045 11.8 1.3 25 17-41 181-205 (275) No 1 >d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]} Probab=24.19 E-value=8.1 Score=16.92 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=34.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHH------------HHCCC--CCCCCCCHHHHHHC Q ss_conf 899889999999999999999725-8046766------------54034--56677885665323 Q gi|254781137|r 25 NQDESTVLLVSFLQQAGEEICLKV-DWPQLLQ------------EIKID--HWPFHLPQDYYRPL 74 (195) Q Consensus 25 stDp~~~qllal~~~~g~el~~~~-dW~~l~~------------e~t~~--~~~~~lP~Dy~R~v 74 (195) |.+++..-|++|+++..-+|.|.| -|..-.| +-.+. +..|+|+.+-+.++ T Consensus 74 s~~EQlq~MrDL~~~~dt~isR~Y~~ls~n~KL~fWY~Lae~M~~G~VipvP~~YqlS~~a~~vl 138 (174) T d1m98a1 74 TPLQQTQAMCDLANRTDTPICRTYASWSPNIKLGFWYELGRFMDQGLVAPIPEGYKLSANANAIL 138 (174) T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCCCCTTCCCCHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHH T ss_conf 99999999999983789788899860588506799999998860782762798887688899999 No 2 >d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=21.17 E-value=18 Score=14.85 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=8.1 Q ss_pred HHHHHHCCCC-HHHHHH Q ss_conf 9998716999-799999 Q gi|254781137|r 164 WRWRRAQGLS-FDDCLR 179 (195) Q Consensus 164 WRwkraKGld-Y~e~l~ 179 (195) -.|.|+-||+ |++-+. T Consensus 20 C~WLraaGFpqYAqlyE 36 (78) T d2dkya1 20 CDWLRATGFPQYAQLYE 36 (78) T ss_dssp HHHHHHHTCTTHHHHHH T ss_pred HHHHHHCCCHHHHHHHH T ss_conf 99999838848999865 No 3 >d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Probab=14.83 E-value=34 Score=13.25 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=11.3 Q ss_pred CCHHHHHHHHHHHCCCC Q ss_conf 94899999999981988 Q gi|254781137|r 1 MNVLAILNTVCDLVGLS 17 (195) Q Consensus 1 MtlLsiiq~v~~~igl~ 17 (195) |+|+.++++||.-.|++ T Consensus 21 t~l~~VL~eaC~k~~~~ 37 (76) T d2al3a1 21 TVLLQVLEDTCRRQDFN 37 (76) T ss_dssp SBHHHHHHHHHHHTTCC T ss_pred CCHHHHHHHHHHHHCCC T ss_conf 58999999999981998 No 4 >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Probab=13.96 E-value=12 Score=15.89 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=4.9 Q ss_pred CCCHHHHHHHHH Q ss_conf 999799999999 Q gi|254781137|r 171 GLSFDDCLREFD 182 (195) Q Consensus 171 GldY~e~l~~Ye 182 (195) |-++.|.+.+-. T Consensus 164 ~~~~~e~~~~i~ 175 (192) T d1lw7a2 164 SPSYLDRYNQVK 175 (192) T ss_dssp CSSHHHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 989999999999 No 5 >d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]} Probab=11.09 E-value=44 Score=12.58 Aligned_cols=40 Identities=5% Similarity=0.223 Sum_probs=23.9 Q ss_pred HHHHHHHCCCCCCCEE--ECCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998198886311--138998899999999999999997 Q gi|254781137|r 7 LNTVCDLVGLSRFETV--YQNQDESTVLLVSFLQQAGEEICL 46 (195) Q Consensus 7 iq~v~~~igl~~P~aV--~~stDp~~~qllal~~~~g~el~~ 46 (195) +.++|.+.|+++.+-- |+|-|.-+..++....+..+.+++ T Consensus 28 i~~Ia~~agvs~~~~y~~F~sK~~L~~~~~~~~~~~~~~~~~ 69 (71) T d1ui5a1 28 LSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAK 69 (71) T ss_dssp HHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999879487699989829999999999999999999984 No 6 >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Probab=9.60 E-value=50 Score=12.27 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=18.0 Q ss_pred HHHHHHHCCCCCEEECCCEEEECCC Q ss_conf 5555421148717845743333589 Q gi|254781137|r 96 WGIVKRISHTPWYWIDGRMIHLSIN 120 (195) Q Consensus 96 W~~~~~~~~~p~~~i~g~~~~~~~~ 120 (195) .....+++.||.+.|+|+.++-+.. T Consensus 141 ~a~~~gI~gTPt~vInGky~i~~~~ 165 (188) T d1fvka_ 141 AAADVQLRGVPAMFVNGKYQLNPQG 165 (188) T ss_dssp HHHHTTCCSSSEEEETTTEEECGGG T ss_pred HHHHCCCCCCCEEEECCEEEECCCC T ss_conf 9997198406689998999856655 No 7 >d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]} Probab=8.65 E-value=55 Score=12.04 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=29.6 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHC Q ss_conf 9999999972580467665403456677885665323 Q gi|254781137|r 38 QQAGEEICLKVDWPQLLQEIKIDHWPFHLPQDYYRPL 74 (195) Q Consensus 38 ~~~g~el~~~~dW~~l~~e~t~~~~~~~lP~Dy~R~v 74 (195) .++=.+|+++|=+|..+++|++......++.+--+.+ T Consensus 5 ~~EK~~Iak~yLiPk~l~~~gl~~~~i~i~~~~l~~i 41 (94) T d1qzma_ 5 EDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI 41 (94) T ss_dssp HHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 8999999999838899998666521135559999999 No 8 >d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=8.07 E-value=58 Score=11.89 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=3.9 Q ss_pred CCEECH-HHHH Q ss_conf 612222-8999 Q gi|254781137|r 149 DSTLLP-TYLL 158 (195) Q Consensus 149 Dt~~l~-erLl 158 (195) .+..+| +.++ T Consensus 141 ~v~w~~~~e~~ 151 (202) T d1mqea_ 141 TMGWYPIAEAA 151 (202) T ss_dssp CEEEEEHHHHH T ss_pred EEEEEEHHHHH T ss_conf 99998899999 No 9 >d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215 {Salmonella typhimurium [TaxId: 90371]} Probab=7.66 E-value=61 Score=11.78 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=17.0 Q ss_pred CCHHHHHHHHHHHCC--CCCCCEEECCCCHH Q ss_conf 948999999999819--88863111389988 Q gi|254781137|r 1 MNVLAILNTVCDLVG--LSRFETVYQNQDES 29 (195) Q Consensus 1 MtlLsiiq~v~~~ig--l~~P~aV~~stDp~ 29 (195) |..+.||+.++..+. ++.-..-+...||. T Consensus 1 m~t~pii~aiv~RL~~~lP~~~ve~fp~~p~ 31 (134) T d2gjva1 1 METLSVIHTVANRLRELNPDMDIHISSTDAK 31 (134) T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEECCSSCTT T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCHH T ss_conf 9616789999999986696765676789877 No 10 >d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=7.58 E-value=61 Score=11.76 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=0.0 Q ss_pred CCCCEEECCCCHHHHHHHHHHHHHH Q ss_conf 8863111389988999999999999 Q gi|254781137|r 17 SRFETVYQNQDESTVLLVSFLQQAG 41 (195) Q Consensus 17 ~~P~aV~~stDp~~~qllal~~~~g 41 (195) +.|++++.++|..++.+...+.+.| T Consensus 181 ~~~~ai~~~~d~~A~g~~~~l~~~g 205 (275) T d2nzug1 181 EKPTAIFVGTDEMALGVIHGAQDRG 205 (275) T ss_dssp SCCSEEEESSHHHHHHHHHHHHTTT T ss_pred CCCEEEEECCHHHHHHHHHHHHHCC T ss_conf 9971898467477777999876539 Done!