RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781137|ref|YP_003065550.1| hypothetical protein
CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)



>gnl|CDD|31954 COG1768, COG1768, Predicted phosphohydrolase [General function
           prediction only].
          Length = 230

 Score = 28.0 bits (62), Expect = 1.9
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 115 IHLSINSPATFRYFSKNWIIDSNKEAKH--HITADDDSTLLPTYLLIKDIIWRWRRAQG- 171
           +HL++  P     F + W     K  KH     + +D  LLP      DI W  R  +  
Sbjct: 9   LHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLP-----GDISWAMRLEEAE 63

Query: 172 --LSFDDCL 178
             L F   L
Sbjct: 64  EDLRFIGDL 72


>gnl|CDD|37653 KOG2442, KOG2442, KOG2442, Uncharacterized conserved protein,
           contains PA domain [General function prediction only].
          Length = 541

 Score = 26.9 bits (59), Expect = 4.0
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 59  IDHWPFHLPQDYYRPLLGGAMVMLDLSLARPVIN-AVDWGIVKRISHTPWYWI 110
           +   P+   +        G M    L L+   I  AV W +     +  W WI
Sbjct: 291 VHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVWAV---FRNEDWAWI 340


>gnl|CDD|38928 KOG3724, KOG3724, KOG3724, Negative regulator of COPII vesicle
           formation [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 973

 Score = 26.5 bits (58), Expect = 5.3
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 13  LVGLSRFETVYQNQDE--STVLLVSFLQQAGEEICLKVDWPQL--LQEIKIDHWPFHLPQ 68
           L  +    +   +     S + L         +I  KVD  ++     +K       + +
Sbjct: 515 LFFVLSNVSDVDDTTTLPSQLELFMAGGW--RQIFFKVDISKVSRFSFVKTSLLALRIDK 572

Query: 69  DYYRPLLGGA 78
            Y    LG +
Sbjct: 573 SYEGSYLGIS 582


>gnl|CDD|143910 pfam00139, Lectin_legB, Legume lectin domain. 
          Length = 232

 Score = 26.1 bits (58), Expect = 7.1
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 118 SINSPATFRYFSKNWIIDSNKEAKHHITADDDSTLLPTYL 157
           SI S A+         ++S K  +  I  D  S  L   L
Sbjct: 145 SIISVASESASFVPLDLNSGKPIQVWIDYDGSSKRLSVTL 184


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.141    0.462 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,581,943
Number of extensions: 134728
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 7
Length of query: 195
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,340,536
Effective search space: 460096816
Effective search space used: 460096816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)