RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781137|ref|YP_003065550.1| hypothetical protein
CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62]
(195 letters)
>1nog_A Conserved hypothetical protein TA0546; structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics; 1.55A {Thermoplasma acidophilum}
(A:)
Length = 177
Score = 28.7 bits (64), Expect = 0.58
Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 1 MNVLAILNTVCDLVGLSRFETVYQNQDESTVLLVSFLQQAGEEIC-----LKVDWPQLLQ 55
+ V ++ + +G + + + + + + L GE++ V +
Sbjct: 26 VEVQGTIDELNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDY 85
Query: 56 -EIKIDHWPFHLPQDYYRPLLGGAMVMLDLSLARPVI 91
E ++ + + + GG++ L +AR V
Sbjct: 86 LEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVS 122
>1woz_A 177AA long conserved hypothetical protein (ST1454);
structural genomics, unknown function; 1.94A {Sulfolobus
tokodaii str} (A:)
Length = 177
Score = 28.3 bits (63), Expect = 0.66
Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 1 MNVLAILNTVCDLVGLSRFETVYQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQ----- 55
+N L L+ + +G + + +++ + + L + GE++ + ++ +
Sbjct: 25 VNFLGDLDELNSFIGFAISKIPWEDXKKDLERVQVELFEIGEDLSTQSSKKKIDEKYVKW 84
Query: 56 -EIKIDHWPFHLPQDYYRPLLGGAMVMLDLSLARPVI 91
E + + + GG+ L + R V
Sbjct: 85 LEERTVEYRKESGPVKLFVIPGGSEEASVLHVTRSVA 121
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} (A:)
Length = 111
Score = 28.2 bits (63), Expect = 0.73
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 119 INSPATFRYFSKNWIIDSNKEAKHHITADDDSTLLPTYLLIKD-IIWRWRRA--QGLSFD 175
+ P +N I + K+A + YL I++ I+ +W + L+
Sbjct: 13 LKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKT 72
Query: 176 DCLR----EFDLALIAEKILWL 193
D+ I +L
Sbjct: 73 SVRPGLKNCGDVNCIGRIHTYL 94
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition,
base flipping, bacterial virulence factor,
transferase/DNA complex; HET: DNA SAH; 1.89A
{Escherichia coli} PDB: 2ore_D* (A:1-56,A:157-278)
Length = 178
Score = 28.3 bits (63), Expect = 0.83
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 52 QLLQEIKIDHWPFHLPQDYYRPLLGGAMVMLDLSLARPVINAVD 95
LL +I H P + P +G V L+ +R ++ ++
Sbjct: 16 PLLDDI-KRHLPKG--ECLVEPFVGAGSVFLNTDFSRYILADIN 56
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii
1); DNA adenine methyltransferase, methylase; HET: SAM;
1.80A {Streptococcus pneumoniae} (A:1-64,A:169-284)
Length = 180
Score = 27.5 bits (61), Expect = 1.1
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 52 QLLQEIKIDHWPFHLPQDYYRPLLGGAMVMLDLSLARPVINAVDWGIVKRISHTPW 107
QLL I + P Y+ P +GG + DL+ VIN + + I +
Sbjct: 23 QLLPVI-RELIPKTY-NRYFEPFVGGGALFFDLAPKDAVINDFNNQLE--IKVGDF 74
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix
hairpin helix, NER, hydrolase; 1.50A {Thermotoga
maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A (A:1-156)
Length = 156
Score = 27.4 bits (61), Expect = 1.5
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 61 HWPFHLPQDYYRPLLGGAM-VMLDLSLARPVINAVDWGIVKRISHTPWYWIDGRMIHLSI 119
P L D + A+ + ++ PV+ G+ K+ + R IHL
Sbjct: 83 PLPNLLFVDGGIGQVNAAIEALKEIGKDCPVV-----GLAKKEET---VVFENREIHLPH 134
Query: 120 NSPA 123
+ P
Sbjct: 135 DHPV 138
>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2,
protein structure initiative, joint center for
structural genomics; HET: UNL; 1.05A {Anabaena
variabilis atcc 29413} PDB: 2evr_A 2fg0_A (A:86-235)
Length = 150
Score = 25.5 bits (55), Expect = 5.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 94 VDWGIVKRISHTPWYWIDGRMIH 116
V +G + +H Y DG IH
Sbjct: 82 VFFGTPVKATHVGLYLGDGCYIH 104
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
(A:1-141)
Length = 141
Score = 25.2 bits (55), Expect = 6.3
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 63 PFHLPQDYYRPLLGGAMVMLDLSLA-RPVINAVDWGIVKRISHTPW----YWIDGRMIHL 117
PF + L + L L L R + + K I L
Sbjct: 39 PFSITLQCSDSLPPKHHLELVLHLGKRDEVVI---KVQKEHGARDKWWFNQQGAQDEILL 95
Query: 118 SINSPAT 124
+++SPA
Sbjct: 96 TLHSPAN 102
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase;
HET: DPN ACL; 2.00A {Porphyromonas gingivalis}
(A:82-347)
Length = 266
Score = 25.1 bits (54), Expect = 6.9
Identities = 8/108 (7%), Positives = 20/108 (18%), Gaps = 11/108 (10%)
Query: 7 LNTVCDLVGLS-----RFETVYQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQEIKIDH 61
+ + F E+ + + G + Q
Sbjct: 151 NSNQLPFIFDVACVNGDFLFSMPCFAEALMRAQKDGKPTGTVAIIASTIDQY------WA 204
Query: 62 WPFHLPQDYYRPLLGGAMVMLDLSLARPVINAVDWGIVKRISHTPWYW 109
P + L + + +N + + K
Sbjct: 205 PPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGENML 252
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.325 0.141 0.462
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,661,694
Number of extensions: 74406
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 17
Length of query: 195
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 111
Effective length of database: 2,116,429
Effective search space: 234923619
Effective search space used: 234923619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)