RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781137|ref|YP_003065550.1| hypothetical protein
CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)



>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae
           [TaxId: 1313]}
          Length = 275

 Score = 28.3 bits (62), Expect = 0.44
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 52  QLLQEIKIDHWPFHLPQDYYRPLLGGAMVMLDLSLARPVINAVDWGIV---KRISHTPWY 108
           QLL  I  +  P      Y+ P +GG  +  DL+    VIN  +  ++   ++I   P  
Sbjct: 14  QLLPVI-RELIPKT-YNRYFEPFVGGGALFFDLAPKDAVINDFNAELINCYQQIKDNPQE 71

Query: 109 WIDGRMIHLSINSPATFRYFSKNWIIDSNKEAKHHITA 146
            I+   +H   NS   +         +          A
Sbjct: 72  LIEILKVHQEYNSKEYYLDLRSADRDERIDMMSEVQRA 109


>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr
           C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
          Length = 148

 Score = 26.6 bits (58), Expect = 1.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 96  WGIVKRISHTPWYWIDGRMIHLS 118
           +G  ++ +H   Y  DG  IH S
Sbjct: 82  FGTSQKATHVGLYLADGYYIHSS 104


>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 168

 Score = 24.6 bits (53), Expect = 5.3
 Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 3/54 (5%)

Query: 142 HHITADDDSTLLPTYLLIKDIIWRWRRAQGLSFDDCLREFDLALIAEKILWLGG 195
             I         P ++L  D     +RA  L   D L       +   I     
Sbjct: 91  TKILTSPWH---PFFVLTPDFKIVEKRADELKEGDILIGGMGLEVVRHITTTNE 141


>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1,
           LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 24.7 bits (54), Expect = 5.7
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 9/48 (18%)

Query: 155 TYLLIKD-IIWRWRR--AQGLSFDDCLR------EFDLALIAEKILWL 193
            +L I++  +  W       L+F+  L+        D  L+     +L
Sbjct: 38  VFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 85


>d1yf3a1 c.66.1.28 (A:1-259) DNA methylase T4DAM {Bacteriophage T4
           [TaxId: 10665]}
          Length = 259

 Score = 24.5 bits (52), Expect = 6.5
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 52  QLLQEIKIDHWPFHLPQDYYRPLLGGAMVMLDLSLARPVINAVDWGIV---KRISHTPWY 108
            LL E+   H+P +    +     GG  V L+++    + N +   I+   KR+ +  W 
Sbjct: 13  SLLPEL-KSHFPKY--NRFVDLFCGGLSVSLNVN-GPVLANDIQEPIIEMYKRLINVSWD 68

Query: 109 WIDGRMIHLSINSPATFRYFSKNWIIDSNKEAKH 142
            +   +    ++  +   +       +  ++   
Sbjct: 69  DVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLL 102


>d1ei7a_ a.24.5.1 (A:) Tobacco mosaic virus coat protein {Tobacco
           mosaic virus, vulgare strain [TaxId: 12242]}
          Length = 158

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 118 SINSPATFRYFSKNWI 133
           SI +P+ F + S  W 
Sbjct: 3   SITTPSQFVFLSSAWA 18


>d1kg0c_ d.169.1.1 (C:) EBV gp42 {Epstein-Barr virus [TaxId: 10376]}
          Length = 136

 Score = 24.0 bits (51), Expect = 8.1
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 8/59 (13%)

Query: 96  WGIVKRISHTPWYWIDGRMIHLSINSPATFRYFSKNWIIDSNKEAKHHITADDDSTLLP 154
           W  V R+    W  +DG                  +     +K +   ++  + S L P
Sbjct: 78  WVGVYRVGEGNWTSLDG--------GTFKVYQIFGSHCTYVSKFSTVPVSHHECSFLKP 128


>d1rmva_ a.24.5.1 (A:) Ribgrass mosaic virus {Ribgrass mosaic virus
           [TaxId: 51680]}
          Length = 156

 Score = 24.0 bits (52), Expect = 8.7
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 118 SINSPATFRYFSKNWI 133
           +I +   ++YF+  W 
Sbjct: 3   NITNSNQYQYFAAVWA 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.462 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 813,011
Number of extensions: 37360
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 20
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)