RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781138|ref|YP_003065551.1| hypothetical protein
CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>gnl|CDD|131302 TIGR02248, mutH_TIGR, DNA mismatch repair endonuclease MutH.  This
           family consists exclusively of MutH, an endonuclease in
           some Proteobacteria that is activated by MutS1 and MutL
           for methylation-directed mismatch repair.
          Length = 217

 Score = 29.4 bits (66), Expect = 0.54
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 22/72 (30%)

Query: 80  HLPLSISLQKNKGYI---------ITADSIC------------VLPISSEDVVL-YYYAC 117
            +P+  +L+++KG++          TA S               +PI+SE   L   + C
Sbjct: 28  GIPVPNNLKRDKGWVGMLLERALGATAGSKPEQDFSHLGVELKTIPINSEGYPLETTFVC 87

Query: 118 IPPLTENNPVNW 129
           + PLT N+ V W
Sbjct: 88  VAPLTNNSGVTW 99


>gnl|CDD|185671 PTZ00494, PTZ00494, tuzin-like protein; Provisional.
          Length = 664

 Score = 27.4 bits (60), Expect = 2.3
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 103 LPISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEI------------ALWE 150
           L +SS  +  Y   CIPP +      +  H    L L   VE +            AL +
Sbjct: 516 LNVSSRRLDFY---CIPPFSRRQAFAYAEHTLDALDLVCFVEVVGTRSSDVDELCAALRQ 572

Query: 151 QKIDKATTASALFQESIKKLQ 171
           + +D  T  S +   ++++LQ
Sbjct: 573 RGVDPVTYTSLMLARAMRRLQ 593


>gnl|CDD|139038 PRK12526, PRK12526, RNA polymerase sigma factor; Provisional.
          Length = 206

 Score = 26.3 bits (58), Expect = 4.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 3  KDFASLLIDVSHYVEKGGFTYLFKNFLHRI 32
           + +  LI V+   +K  FT+LF+ F  +I
Sbjct: 22 TELSQWLILVAISRDKQAFTHLFQFFAPKI 51


>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
           Members of this family are adenylate kinase, EC 2.7.4.3.
           This clade is found only in eukaryotes and includes
           human adenylate kinase isozyme 1 (myokinase). Within the
           adenylate kinase superfamily, this set appears
           specifically closely related to a subfamily of
           eukaryotic UMP-CMP kinases (TIGR01359), rather than to
           the large clade of bacterial, archaeal, and eukaryotic
           adenylate kinase family members in TIGR01351.
          Length = 188

 Score = 25.9 bits (57), Expect = 5.7
 Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 32/128 (25%)

Query: 16  VEKGGFTYLFKNFLHRIEVK--INRALRLRE-MER------KIVLSLVEGSAPLPDDYIE 66
           VEK GFT+L    L R EV     R  +L+  ME         VL L++ +         
Sbjct: 24  VEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAM-------- 75

Query: 67  IRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPPLTENNP 126
           +  L  +KG  +D  P     +  +G            I    +VLY+       +E+  
Sbjct: 76  VAALGTSKGFLIDGYP----REVKQGEEFERR------IGPPTLVLYFDC-----SEDTM 120

Query: 127 VNWLLHRA 134
           V  LL RA
Sbjct: 121 VKRLLKRA 128


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,973,691
Number of extensions: 184991
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 11
Length of query: 178
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,114,577
Effective search space: 374426507
Effective search space used: 374426507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)