RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62] (178 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.5 bits (105), Expect = 1e-05 Identities = 39/242 (16%), Positives = 66/242 (27%), Gaps = 92/242 (38%) Query: 4 DFASL--LIDVSHYVEKGGFTYLFKNFLHRIEVKIN---RALRLREMERKIVLSLVEGSA 58 D S L +SH G H + V A +L+E + L E + Sbjct: 2 DAYSTRPLT-LSH----GSLE-------HVLLVPTASFFIASQLQE---QFNKILPEPTE 46 Query: 59 PLPDDY-----IEI--RFL--------EDNKGNKLDHLPLSIS------LQKNKGYIITA 97 D E+ +FL G L L ++ L+ N + + A Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106 Query: 98 --DSICVLPISSEDVVL--YYYACI---PPLTENNPVNWLLHRAPD----LY-------- 138 + ++ Y A I P + + + L + L Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-SALFRAVGEGNAQLVAIFGGQGN 165 Query: 139 ----------LY----GLVEEIALWEQKIDKATTASALFQE------SIKKL--QQNDIR 176 LY LV ++ I ++ E +K+ Q +I Sbjct: 166 TDDYFEELRDLYQTYHVLVGDL------IK---FSAETLSELIRTTLDAEKVFTQGLNIL 216 Query: 177 SW 178 W Sbjct: 217 EW 218 Score = 31.8 bits (72), Expect = 0.096 Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 90/189 (47%) Query: 29 LHRIEV-----KINRALRLREMERKIVLSLVEGSAPLPDDYIEI-----------RFLED 72 L + +V K N L +++ +SLV G + + + L Sbjct: 344 LTQEQVQDYVNKTNS--HLPA-GKQVEISLVNG----AKNLV-VSGPPQSLYGLNLTLRK 395 Query: 73 NK-GNKLD--HLPLSISLQKNKGYIITADSICVLPISS---------------EDVVLYY 114 K + LD +P S + K LP++S +D+V Sbjct: 396 AKAPSGLDQSRIPFS----ERKLKFSNR----FLPVASPFHSHLLVPASDLINKDLV-KN 446 Query: 115 YACIPP------------------LTENNPVNWLLHRAPDLYLYGLVEEIAL----WEQK 152 L+ + + R +V+ I WE Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGS-----ISER--------IVDCIIRLPVKWE-- 491 Query: 153 IDKATTASA 161 T A Sbjct: 492 --TTTQFKA 498 >2zr1_A Agglutinin-1 chain A; ribosome-inactivating protein, immunotoxin, agglutinin abrin, glycoprotein, hydrolase, lectin, plant defense; HET: NAG; 2.60A {Abrus precatorius} PDB: 2q3n_A* Length = 258 Score = 27.6 bits (61), Expect = 1.6 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 12/124 (9%) Query: 5 FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64 +L + L I + A R R + + +V+SL +A PD Sbjct: 130 LEALRQGIKFLRSGASDDEEIARTLIVIIQMVAEAARFRYVSKLVVISLSNRAAFQPDPS 189 Query: 65 IEIRFLEDN--------KGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYA 116 + LE+ + D P +++L + + S + S + L + Sbjct: 190 --MLSLENTWEPLSRAVQHTVQDTFPQNVTLINVRQERVVVSS--LSHPSVSALALMLFV 245 Query: 117 CIPP 120 C P Sbjct: 246 CNPL 249 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 27.2 bits (59), Expect = 2.4 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%) Query: 144 EEIALW--EQK--IDKATTASALFQESIKKLQQNDIRSW 178 E I W EQ+ + + AS + ++ ++ + D+ W Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123 >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 Score = 26.4 bits (57), Expect = 4.2 Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 16 VEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRF 69 V +G + F + V+I A+ L+ + SL + L D Y+ + Sbjct: 15 VPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV 68 >1abr_A Abrin-A; complex (glycosidase/carbohydrate); HET: NAG NGZ MAN BMA BGC; 2.14A {} SCOP: d.165.1.1 Length = 251 Score = 25.7 bits (56), Expect = 6.0 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 12/124 (9%) Query: 5 FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64 +L +S + G L I + A R R + ++ +S+ G+A PD Sbjct: 131 LQALTHGISFFRSGGNDNEEKARTLIVIIQMVAEAARFRYISNRVRVSIQTGTAFQPDAA 190 Query: 65 IEIRFLEDN--------KGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYA 116 + LE+N + + D P ++L + + DS + + + L + Sbjct: 191 --MISLENNWDNLSRGVQESVQDTFPNQVTLTNIRNEPVIVDS--LSHPTVAVLALMLFV 246 Query: 117 CIPP 120 C PP Sbjct: 247 CNPP 250 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 25.7 bits (55), Expect = 6.2 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 164 QESIKKLQ 171 ++++KKLQ Sbjct: 19 KQALKKLQ 26 >1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A* Length = 119 Score = 25.1 bits (55), Expect = 8.3 Identities = 6/24 (25%), Positives = 11/24 (45%) Query: 63 DYIEIRFLEDNKGNKLDHLPLSIS 86 + E+ F +G+ L L +S Sbjct: 81 EVAEVVFDAHPEGHGHYTLALLLS 104 >2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyneuropathy, transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A Length = 127 Score = 25.2 bits (55), Expect = 8.6 Identities = 4/24 (16%), Positives = 12/24 (50%) Query: 63 DYIEIRFLEDNKGNKLDHLPLSIS 86 ++ E+ F ++ G + + +S Sbjct: 89 EHAEVVFTANDSGPRRYTIAALLS 112 >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2 Length = 258 Score = 25.2 bits (54), Expect = 9.4 Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 33 EVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDN 73 E KIN LR +++ ++ + +R +D Sbjct: 217 ERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDT 257 >3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis} Length = 250 Score = 25.1 bits (54), Expect = 9.8 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 141 GLVEEIALWEQKIDKATTASALFQESIKKL-QQND 174 L E+ W+ +D+ + E ++ L + D Sbjct: 214 ELPEDARAWQVGVDQLAAEDSEVAEYVQSLEEARD 248 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0669 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,573,999 Number of extensions: 72605 Number of successful extensions: 199 Number of sequences better than 10.0: 1 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 20 Length of query: 178 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 92 Effective length of database: 3,608,246 Effective search space: 331958632 Effective search space used: 331958632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.3 bits)