RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781138|ref|YP_003065551.1| hypothetical protein
CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 39/242 (16%), Positives = 66/242 (27%), Gaps = 92/242 (38%)

Query: 4   DFASL--LIDVSHYVEKGGFTYLFKNFLHRIEVKIN---RALRLREMERKIVLSLVEGSA 58
           D  S   L  +SH    G          H + V       A +L+E   +    L E + 
Sbjct: 2   DAYSTRPLT-LSH----GSLE-------HVLLVPTASFFIASQLQE---QFNKILPEPTE 46

Query: 59  PLPDDY-----IEI--RFL--------EDNKGNKLDHLPLSIS------LQKNKGYIITA 97
               D       E+  +FL            G     L L ++      L+ N  + + A
Sbjct: 47  GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106

Query: 98  --DSICVLPISSEDVVL--YYYACI---PPLTENNPVNWLLHRAPD----LY-------- 138
                    +     ++  Y  A I    P  + +  + L     +    L         
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-SALFRAVGEGNAQLVAIFGGQGN 165

Query: 139 ----------LY----GLVEEIALWEQKIDKATTASALFQE------SIKKL--QQNDIR 176
                     LY     LV ++      I     ++    E        +K+  Q  +I 
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDL------IK---FSAETLSELIRTTLDAEKVFTQGLNIL 216

Query: 177 SW 178
            W
Sbjct: 217 EW 218



 Score = 31.8 bits (72), Expect = 0.096
 Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 90/189 (47%)

Query: 29  LHRIEV-----KINRALRLREMERKIVLSLVEGSAPLPDDYIEI-----------RFLED 72
           L + +V     K N    L    +++ +SLV G      + + +             L  
Sbjct: 344 LTQEQVQDYVNKTNS--HLPA-GKQVEISLVNG----AKNLV-VSGPPQSLYGLNLTLRK 395

Query: 73  NK-GNKLD--HLPLSISLQKNKGYIITADSICVLPISS---------------EDVVLYY 114
            K  + LD   +P S    + K           LP++S               +D+V   
Sbjct: 396 AKAPSGLDQSRIPFS----ERKLKFSNR----FLPVASPFHSHLLVPASDLINKDLV-KN 446

Query: 115 YACIPP------------------LTENNPVNWLLHRAPDLYLYGLVEEIAL----WEQK 152
                                   L+ +     +  R        +V+ I      WE  
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGS-----ISER--------IVDCIIRLPVKWE-- 491

Query: 153 IDKATTASA 161
               T   A
Sbjct: 492 --TTTQFKA 498


>2zr1_A Agglutinin-1 chain A; ribosome-inactivating protein, immunotoxin,
           agglutinin abrin, glycoprotein, hydrolase, lectin, plant
           defense; HET: NAG; 2.60A {Abrus precatorius} PDB:
           2q3n_A*
          Length = 258

 Score = 27.6 bits (61), Expect = 1.6
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 12/124 (9%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64
             +L   +                L  I   +  A R R + + +V+SL   +A  PD  
Sbjct: 130 LEALRQGIKFLRSGASDDEEIARTLIVIIQMVAEAARFRYVSKLVVISLSNRAAFQPDPS 189

Query: 65  IEIRFLEDN--------KGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYA 116
             +  LE+         +    D  P +++L   +   +   S  +   S   + L  + 
Sbjct: 190 --MLSLENTWEPLSRAVQHTVQDTFPQNVTLINVRQERVVVSS--LSHPSVSALALMLFV 245

Query: 117 CIPP 120
           C P 
Sbjct: 246 CNPL 249


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.2 bits (59), Expect = 2.4
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 144 EEIALW--EQK--IDKATTASALFQESIKKLQQNDIRSW 178
           E I  W  EQ+  + +   AS + ++  ++  + D+  W
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123


>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
          nucleotide-binding, diacylglycerol binding,
          serine/threonine-protein kinase, transferase; 1.75A
          {Homo sapiens}
          Length = 157

 Score = 26.4 bits (57), Expect = 4.2
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 16 VEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRF 69
          V +G  +     F   + V+I  A+ L+     +  SL +    L D Y+ +  
Sbjct: 15 VPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV 68


>1abr_A Abrin-A; complex (glycosidase/carbohydrate); HET: NAG NGZ MAN BMA
           BGC; 2.14A {} SCOP: d.165.1.1
          Length = 251

 Score = 25.7 bits (56), Expect = 6.0
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64
             +L   +S +   G         L  I   +  A R R +  ++ +S+  G+A  PD  
Sbjct: 131 LQALTHGISFFRSGGNDNEEKARTLIVIIQMVAEAARFRYISNRVRVSIQTGTAFQPDAA 190

Query: 65  IEIRFLEDN--------KGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYA 116
             +  LE+N        + +  D  P  ++L   +   +  DS  +   +   + L  + 
Sbjct: 191 --MISLENNWDNLSRGVQESVQDTFPNQVTLTNIRNEPVIVDS--LSHPTVAVLALMLFV 246

Query: 117 CIPP 120
           C PP
Sbjct: 247 CNPP 250


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 6.2
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 164 QESIKKLQ 171
           ++++KKLQ
Sbjct: 19  KQALKKLQ 26


>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport
           protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A
           1sn0_A 1sn5_A*
          Length = 119

 Score = 25.1 bits (55), Expect = 8.3
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 63  DYIEIRFLEDNKGNKLDHLPLSIS 86
           +  E+ F    +G+    L L +S
Sbjct: 81  EVAEVVFDAHPEGHGHYTLALLLS 104


>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic
           polyneuropathy, transport protein; HET: CSU; 1.45A {Homo
           sapiens} SCOP: b.3.4.1 PDB: 1zcr_A 1zd6_A 2trh_A 1bz8_A
           2qpf_A 1tfp_A
          Length = 127

 Score = 25.2 bits (55), Expect = 8.6
 Identities = 4/24 (16%), Positives = 12/24 (50%)

Query: 63  DYIEIRFLEDNKGNKLDHLPLSIS 86
           ++ E+ F  ++ G +   +   +S
Sbjct: 89  EHAEVVFTANDSGPRRYTIAALLS 112


>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily;
           1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2
          Length = 258

 Score = 25.2 bits (54), Expect = 9.4
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 33  EVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDN 73
           E KIN  LR  +++    ++           +  +R  +D 
Sbjct: 217 ERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDT 257


>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein
           structure initiativ midwest center for structural
           genomics; 2.97A {Streptomyces avermitilis}
          Length = 250

 Score = 25.1 bits (54), Expect = 9.8
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 141 GLVEEIALWEQKIDKATTASALFQESIKKL-QQND 174
            L E+   W+  +D+     +   E ++ L +  D
Sbjct: 214 ELPEDARAWQVGVDQLAAEDSEVAEYVQSLEEARD 248


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,573,999
Number of extensions: 72605
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 20
Length of query: 178
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 92
Effective length of database: 3,608,246
Effective search space: 331958632
Effective search space used: 331958632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)