Query gi|254781139|ref|YP_003065552.1| hypothetical protein CLIBASIA_05205 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 65
No_of_seqs 3 out of 5
Neff 1.5
Searched_HMMs 13730
Date Wed Jun 1 11:31:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781139.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pwba1 d.169.1.1 (A:235-355) 10.2 37 0.0027 14.9 0.6 31 29-59 29-59 (121)
2 d1ypqa1 d.169.1.1 (A:140-270) 9.9 60 0.0044 13.7 1.6 31 29-59 35-65 (131)
3 d2fsra1 d.108.1.1 (A:4-167) Pr 7.0 87 0.0064 12.9 1.7 35 23-59 1-36 (164)
4 d1g1sa1 d.169.1.1 (A:1-118) P- 5.9 1E+02 0.0074 12.6 1.5 30 29-58 21-50 (118)
5 d1cmca_ a.43.1.5 (A:) Met repr 5.3 68 0.0049 13.5 0.1 11 21-31 25-35 (104)
6 d1r13a1 d.169.1.1 (A:110-228) 4.4 1.3E+02 0.0093 12.0 1.0 30 29-58 28-57 (119)
7 d1g1ta1 d.169.1.1 (A:1-118) E- 4.2 1.3E+02 0.0098 11.9 1.5 30 29-58 21-50 (118)
8 d1b50a_ d.9.1.1 (A:) Macrophag 4.2 1.3E+02 0.0098 11.9 1.3 18 40-57 52-69 (69)
9 d1t0aa_ d.79.5.1 (A:) 2C-methy 3.9 1.2E+02 0.0084 12.3 0.4 14 32-45 29-42 (158)
10 d1w55a2 d.79.5.1 (A:208-370) I 3.7 1.2E+02 0.0086 12.2 0.4 12 34-45 32-43 (163)
No 1
>d1pwba1 d.169.1.1 (A:235-355) Surfactant protein, lectin domain {Human (Homo sapiens), SP-D [TaxId: 9606]}
Probab=10.20 E-value=37 Score=14.85 Aligned_cols=31 Identities=6% Similarity=0.220 Sum_probs=24.1
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCEEH
Q ss_conf 2056812011254078999970266641000
Q gi|254781139|r 29 LKDSHLLQAHTEGDDVWVNKWLNNRDNASWR 59 (65)
Q Consensus 29 ah~~~LvqAHsEGDD~~VkrwLNn~DNraWR 59 (65)
..+++|+..+++.+..|+...++......|-
T Consensus 29 ~~g~~La~i~s~~e~~~l~~~~~~~~~~~Wi 59 (121)
T d1pwba1 29 QAGGQLASPRSAAENAALQQLVVAKNEAAFL 59 (121)
T ss_dssp HTTSEECCCCSHHHHHHHHHHHHHHTCCEEC
T ss_pred HCCCEECCEEECHHHHHHHHCCCCCEEEEEE
T ss_conf 8699863600611113334200110000145
No 2
>d1ypqa1 d.169.1.1 (A:140-270) Oxidised low density lipoprotein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.86 E-value=60 Score=13.73 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=24.7
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCEEH
Q ss_conf 2056812011254078999970266641000
Q gi|254781139|r 29 LKDSHLLQAHTEGDDVWVNKWLNNRDNASWR 59 (65)
Q Consensus 29 ah~~~LvqAHsEGDD~~VkrwLNn~DNraWR 59 (65)
..+++|+.-+++.+..|+..++.......|-
T Consensus 35 ~~g~~La~i~s~~e~~~l~~~~~~~~~~~Wi 65 (131)
T d1ypqa1 35 SLDAKLLKINSTADLDFIQQAISYSSFPFWM 65 (131)
T ss_dssp HTTCEECCCCSHHHHHHHHHHHTTCCCCEEE
T ss_pred HCCCEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 7599501221345556666541024775079
No 3
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.02 E-value=87 Score=12.89 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=23.5
Q ss_pred HCCHHHHCCCC-EEEEECCCCHHHHHHHHCCCCCCEEH
Q ss_conf 00042220568-12011254078999970266641000
Q gi|254781139|r 23 SIPVSILKDSH-LLQAHTEGDDVWVNKWLNNRDNASWR 59 (65)
Q Consensus 23 SiPlnvah~~~-LvqAHsEGDD~~VkrwLNn~DNraWR 59 (65)
|||+ +-++. .++.-++.|-..+..|.|+.+...|-
T Consensus 1 ~~~~--l~t~RL~LRp~~~~D~~~l~~~~~~~~~~~~~ 36 (164)
T d2fsra1 1 SIPT--LRTERLTLRPLAMADFPAYRDFMASPRSTGVG 36 (164)
T ss_dssp CCCC--EECSSEEEECCCGGGHHHHHHHHHSGGGGGGT
T ss_pred CCCE--EECCCEEEECCCHHHHHHHHHHHCCHHHHHCC
T ss_conf 9998--97894899619999999999997595565137
No 4
>d1g1sa1 d.169.1.1 (A:1-118) P-selectin, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.89 E-value=1e+02 Score=12.55 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=22.3
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCEE
Q ss_conf 205681201125407899997026664100
Q gi|254781139|r 29 LKDSHLLQAHTEGDDVWVNKWLNNRDNASW 58 (65)
Q Consensus 29 ah~~~LvqAHsEGDD~~VkrwLNn~DNraW 58 (65)
.++++|+-.+++-+..|+...++..+...|
T Consensus 21 ~~gg~La~i~s~~e~~fl~~~~~~~~~~~W 50 (118)
T d1g1sa1 21 NRYTDLVAIQNKNEIDYLNKVLPYYSSYYW 50 (118)
T ss_dssp HHSSEECCCCCHHHHHHHHHHSCCCTTCEE
T ss_pred HCCCEEEEEECHHHHHHHHHHHCCCCCCCH
T ss_conf 769989078378998999866333441204
No 5
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=5.30 E-value=68 Score=13.47 Aligned_cols=11 Identities=45% Similarity=0.658 Sum_probs=8.3
Q ss_pred EHHCCHHHHCC
Q ss_conf 01000422205
Q gi|254781139|r 21 IASIPVSILKD 31 (65)
Q Consensus 21 vASiPlnvah~ 31 (65)
..|||++|++-
T Consensus 25 TVsIP~kVLki 35 (104)
T d1cmca_ 25 TVSIPLKVLKI 35 (104)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEEEHHHHHH
T ss_conf 67610899999
No 6
>d1r13a1 d.169.1.1 (A:110-228) Surfactant protein, lectin domain {Rat (Rattus norvegicus), SP-A [TaxId: 10116]}
Probab=4.44 E-value=1.3e+02 Score=12.02 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=20.7
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCEE
Q ss_conf 205681201125407899997026664100
Q gi|254781139|r 29 LKDSHLLQAHTEGDDVWVNKWLNNRDNASW 58 (65)
Q Consensus 29 ah~~~LvqAHsEGDD~~VkrwLNn~DNraW 58 (65)
..+.+|+..+++.+..++.+.+....+..|
T Consensus 28 ~~gg~La~i~s~~e~~~l~~~~~~~~~~~W 57 (119)
T d1r13a1 28 RAGGNIAVPRTPEENEAIASIAKKYNNYVY 57 (119)
T ss_dssp HTTSEECCCCSHHHHHHHHHHHHHTTSCEE
T ss_pred HCCCEEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf 079899189416874133312134414799
No 7
>d1g1ta1 d.169.1.1 (A:1-118) E-selectin, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.21 E-value=1.3e+02 Score=11.92 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=21.3
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCEE
Q ss_conf 205681201125407899997026664100
Q gi|254781139|r 29 LKDSHLLQAHTEGDDVWVNKWLNNRDNASW 58 (65)
Q Consensus 29 ah~~~LvqAHsEGDD~~VkrwLNn~DNraW 58 (65)
..+++|+.-+++....++.+.|...+...|
T Consensus 21 ~~g~~La~i~s~~e~~~l~~~~~~~~~~~W 50 (118)
T d1g1ta1 21 QRYTHLVAIQNKEEIEYLNSILSYSPSYYW 50 (118)
T ss_dssp HHSSEECCCCSHHHHHHHHHHSCCCTTCEE
T ss_pred HCCCEEEEECCHHHHHHHHHCCCCCCCEEE
T ss_conf 779999187628995887741324221002
No 8
>d1b50a_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), 1-alpha [TaxId: 9606]}
Probab=4.20 E-value=1.3e+02 Score=11.92 Aligned_cols=18 Identities=17% Similarity=0.604 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHCCCCCCE
Q ss_conf 540789999702666410
Q gi|254781139|r 40 EGDDVWVNKWLNNRDNAS 57 (65)
Q Consensus 40 EGDD~~VkrwLNn~DNra 57 (65)
.-++.||++.++.-|.+|
T Consensus 52 dP~~~WVk~~i~~l~~~a 69 (69)
T d1b50a_ 52 DPSEEWVQKYVSDLELSA 69 (69)
T ss_dssp CTTCHHHHHHTTTTSSCC
T ss_pred CCCHHHHHHHHHHHHCCC
T ss_conf 988389999999974279
No 9
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Probab=3.89 E-value=1.2e+02 Score=12.25 Aligned_cols=14 Identities=43% Similarity=0.518 Sum_probs=9.2
Q ss_pred CCEEEEECCCCHHH
Q ss_conf 68120112540789
Q gi|254781139|r 32 SHLLQAHTEGDDVW 45 (65)
Q Consensus 32 ~~LvqAHsEGDD~~ 45 (65)
.-=+.+||.||-..
T Consensus 29 ~~gl~gHSDgDv~~ 42 (158)
T d1t0aa_ 29 ETGLVAHSDGDVVL 42 (158)
T ss_dssp SCEECCSSSCCHHH
T ss_pred CCCCEEECCCCHHH
T ss_conf 77725761750899
No 10
>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=3.73 E-value=1.2e+02 Score=12.20 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=8.3
Q ss_pred EEEEECCCCHHH
Q ss_conf 120112540789
Q gi|254781139|r 34 LLQAHTEGDDVW 45 (65)
Q Consensus 34 LvqAHsEGDD~~ 45 (65)
=+.+||.||-..
T Consensus 32 gl~gHSDgDv~~ 43 (163)
T d1w55a2 32 GLKAHSDGDVLA 43 (163)
T ss_dssp EECSSTTCCHHH
T ss_pred CCCEECCCCHHH
T ss_conf 761334763447
Done!