BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781139|ref|YP_003065552.1| hypothetical protein
CLIBASIA_05205 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781139|ref|YP_003065552.1| hypothetical protein CLIBASIA_05205 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040816|gb|ACT57612.1| hypothetical protein CLIBASIA_05205 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 65

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MEINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRT 60
          MEINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRT
Sbjct: 1  MEINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRT 60

Query: 61 SEGYV 65
          SEGYV
Sbjct: 61 SEGYV 65


>gi|150397026|ref|YP_001327493.1| hypothetical protein Smed_1823 [Sinorhizobium medicae WSM419]
 gi|150028541|gb|ABR60658.1| hypothetical protein Smed_1823 [Sinorhizobium medicae WSM419]
          Length = 107

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 10  ATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRTSEGYV 65
           A R    DW R+ASIP+++   + L+QAH+EGDD +V ++LNN DN +WRT EG++
Sbjct: 52  AERAWKGDWHRVASIPLNVAHGAGLVQAHSEGDDRFVKRFLNNSDNRAWRTKEGHL 107


>gi|315122532|ref|YP_004063021.1| hypothetical protein CKC_03920 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495934|gb|ADR52533.1| hypothetical protein CKC_03920 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 118

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 58/63 (92%)

Query: 1   MEINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRT 60
           +++NQACA+++ KK  DWQRIAS+P+S+++ SHLLQAH+EGDD WV+KWLNNRDNASWRT
Sbjct: 54  LDLNQACAVSSGKKREDWQRIASVPLSVVRSSHLLQAHSEGDDQWVSKWLNNRDNASWRT 113

Query: 61  SEG 63
           SEG
Sbjct: 114 SEG 116


>gi|227822440|ref|YP_002826412.1| hypothetical protein NGR_c18950 [Sinorhizobium fredii NGR234]
 gi|227341441|gb|ACP25659.1| hypothetical protein NGR_c18950 [Sinorhizobium fredii NGR234]
          Length = 107

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 39/50 (78%)

Query: 16  RDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRTSEGYV 65
            +W ++AS+P+++    +L++AH+EGDD +V +WLN+ DN +WR+ EG++
Sbjct: 58  GEWTKVASVPLNVAHSENLVRAHSEGDDRYVKRWLNDGDNRAWRSFEGHL 107


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.131    0.417 

Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 641,530,610
Number of Sequences: 14124377
Number of extensions: 19121828
Number of successful extensions: 46159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46150
Number of HSP's gapped (non-prelim): 9
length of query: 65
length of database: 4,842,793,630
effective HSP length: 37
effective length of query: 28
effective length of database: 4,320,191,681
effective search space: 120965367068
effective search space used: 120965367068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)