RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781139|ref|YP_003065552.1| hypothetical protein CLIBASIA_05205 [Candidatus Liberibacter asiaticus str. psy62] (65 letters) >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 25.3 bits (55), Expect = 3.4 Identities = 10/15 (66%), Positives = 11/15 (73%) Query: 32 SHLLQAHTEGDDVWV 46 SHLLQ+ EGD WV Sbjct: 325 SHLLQSMQEGDPAWV 339 >gnl|CDD|149069 pfam07799, DUF1643, Protein of unknown function (DUF1643). The members of this family are all sequences found within hypothetical proteins expressed by various bacterial species. The region concerned is approximately 150 residues long. Length = 135 Score = 24.9 bits (55), Expect = 4.4 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 20 RIASIPVSILKDSHLLQAHTEGDDVWV----NKWLNNRDNA 56 R A+ PV D+HLL+A DDV + + L +R Sbjct: 66 RRAADPVGPENDAHLLRAAKWADDVVLAWGNHGALLDRGQE 106 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.316 0.127 0.409 Gapped Lambda K H 0.267 0.0568 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,030,432 Number of extensions: 43421 Number of successful extensions: 82 Number of sequences better than 10.0: 1 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 4 Length of query: 65 Length of database: 5,994,473 Length adjustment: 36 Effective length of query: 29 Effective length of database: 5,216,585 Effective search space: 151280965 Effective search space used: 151280965 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.4 bits)