RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781139|ref|YP_003065552.1| hypothetical protein
CLIBASIA_05205 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)



>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
          Length = 1495

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 32  SHLLQAHTEGDDVWV 46
           SHLLQ+  EGD  WV
Sbjct: 325 SHLLQSMQEGDPAWV 339


>gnl|CDD|149069 pfam07799, DUF1643, Protein of unknown function (DUF1643).  The
           members of this family are all sequences found within
           hypothetical proteins expressed by various bacterial
           species. The region concerned is approximately 150
           residues long.
          Length = 135

 Score = 24.9 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 20  RIASIPVSILKDSHLLQAHTEGDDVWV----NKWLNNRDNA 56
           R A+ PV    D+HLL+A    DDV +    +  L +R   
Sbjct: 66  RRAADPVGPENDAHLLRAAKWADDVVLAWGNHGALLDRGQE 106


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.127    0.409 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,030,432
Number of extensions: 43421
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 4
Length of query: 65
Length of database: 5,994,473
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,216,585
Effective search space: 151280965
Effective search space used: 151280965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)